View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7219_low_14 (Length: 238)
Name: NF7219_low_14
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7219_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 33681343 - 33681114
Alignment:
| Q |
17 |
aataaccaatgcaccagaaggtggaactgaaagcaacaacctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggtgactttaag |
116 |
Q |
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| T |
33681343 |
aataaccaatgcaccagaaggtggaactgagagcaacagcctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggtgactttagg |
33681244 |
T |
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| Q |
117 |
caaaaatcaagaagctgcaaaaagcaaa-------ttgccagaaaatgaaggacttgcatatgtgaatatttttcgtaac--ttttactctaatactctg |
207 |
Q |
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| T |
33681243 |
caaaaatcaagaagctgcaaaaagcaaattgcatattgccagaaaatgaaggacttgcatatgtgaatatttttcgtaacttttttactctaatactctg |
33681144 |
T |
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| Q |
208 |
tcatttgaatat-ttttcatc-tcactcga |
235 |
Q |
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| T |
33681143 |
tcatttgaatatcttttcatcatcactcga |
33681114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 33666741 - 33666514
Alignment:
| Q |
17 |
aataaccaatgcaccagaaggtggaactgaaagcaacaacctactcaatttctttgcaaatgaggcagcaaggtaagctgggagaaggggtgactttaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |
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| T |
33666741 |
aataaccaatgcaccagaaggtggaactgaaagcaacagcctactcaatttctttgcaaatgaggcagccaggtaagctggaagaaggggtgactttagg |
33666642 |
T |
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| Q |
117 |
caaaaatcaagaagctgcaaaaagcaaattgc-------cagaaaatgaaggacttgcatatgtgaatatttttcgtaacttttactctaatactctgtc |
209 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || || |||| | |||||| || |
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| T |
33666641 |
caagaatcaagaagctgcaaaaagcaaattgcatattgtcagaaaatgaaagacttgcatatgtgaatatttttcgtgacattcactccagtactctttc |
33666542 |
T |
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| Q |
210 |
atttgaatat-ttttcatc-tcactcga |
235 |
Q |
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| T |
33666541 |
atttgaatatcttttcatcatcactcga |
33666514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 33666407 - 33666353
Alignment:
| Q |
174 |
gaatatttttcgtaacttttactctaatactctgtcatttgaatat-ttttcatc |
227 |
Q |
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|||||||||||||||| || |||||| |||||| |||||||||||| |||||||| |
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| T |
33666407 |
gaatatttttcgtaacattcactctagtactctatcatttgaatatcttttcatc |
33666353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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