View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7219_low_15 (Length: 229)

Name: NF7219_low_15
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7219_low_15
NF7219_low_15
[»] chr3 (5 HSPs)
chr3 (39-220)||(51362078-51362259)
chr3 (39-220)||(7044937-7045118)
chr3 (1-220)||(19384964-19385187)
chr3 (39-178)||(8718388-8718527)
chr3 (39-178)||(9070275-9070414)
[»] chr4 (15 HSPs)
chr4 (1-220)||(45256174-45256400)
chr4 (46-178)||(22180893-22181025)
chr4 (39-178)||(4168637-4168776)
chr4 (40-178)||(18923536-18923674)
chr4 (44-178)||(21097402-21097536)
chr4 (44-178)||(27764529-27764663)
chr4 (45-178)||(38485329-38485457)
chr4 (147-220)||(51836756-51836829)
chr4 (51-116)||(51836831-51836896)
chr4 (182-220)||(27764704-27764742)
chr4 (182-219)||(21097577-21097614)
chr4 (182-220)||(4168817-4168855)
chr4 (182-220)||(18923715-18923753)
chr4 (182-220)||(22180814-22180852)
chr4 (1-37)||(18923485-18923521)
[»] chr2 (3 HSPs)
chr2 (39-220)||(18297747-18297928)
chr2 (42-178)||(20710051-20710186)
chr2 (182-219)||(20710227-20710264)
[»] chr7 (5 HSPs)
chr7 (44-220)||(46573136-46573312)
chr7 (39-178)||(46024306-46024445)
chr7 (41-165)||(30429151-30429275)
chr7 (182-220)||(30430169-30430207)
chr7 (182-220)||(46024486-46024524)
[»] chr5 (7 HSPs)
chr5 (1-220)||(28069817-28070031)
chr5 (39-178)||(13363056-13363195)
chr5 (39-178)||(23335351-23335490)
chr5 (53-178)||(25016888-25017006)
chr5 (182-218)||(25016811-25016847)
chr5 (182-220)||(13363236-13363274)
chr5 (182-216)||(42512456-42512490)
[»] chr8 (5 HSPs)
chr8 (39-178)||(15260496-15260635)
chr8 (39-178)||(39022254-39022393)
chr8 (1-178)||(32987099-32987285)
chr8 (179-219)||(39022431-39022471)
chr8 (182-219)||(32987021-32987058)
[»] scaffold0194 (2 HSPs)
scaffold0194 (1-178)||(27835-28019)
scaffold0194 (182-220)||(28060-28098)
[»] scaffold0097 (2 HSPs)
scaffold0097 (42-178)||(13890-14025)
scaffold0097 (182-219)||(14066-14103)
[»] chr1 (5 HSPs)
chr1 (39-179)||(23319731-23319871)
chr1 (39-178)||(18057081-18057220)
chr1 (40-178)||(45889876-45890017)
chr1 (182-219)||(18057261-18057298)
chr1 (1-37)||(23319886-23319922)
[»] scaffold0238 (2 HSPs)
scaffold0238 (1-113)||(24981-25093)
scaffold0238 (164-220)||(24884-24940)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 51362259 - 51362078
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  51362259 ggcgccgccgtgccggagaaccaaactcaccctttttaaaaattaaagccatttttcaacatccattttcgttttcaagccaaatccgaactcggatcgc 51362160  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaatcagttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  51362159 gcaaaaacacaacgagaaggagtagatctaaagattaaaatcggttcgctcctcttcttccctcgcgttttcttcttcttct 51362078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 7045118 - 7044937
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |    
T  7045118 ggcggcgctgtgccggagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccattttcgttttaaagccaaatctgaactcggatcac 7045019  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaatcagttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||    
T  7045018 gcaaaaacacaacgagaaggagtagatctaaagattaaaactggttcgctcctcttcttccctcgcgttttcttcttcttct 7044937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19385187 - 19384964
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgctgg----cggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttca 96  Q
    ||||||||||| ||||||||||||| |  ||| |||| ||    | ||||||| | |||||||||||||||||||||||||||| |||||||||||||||    
T  19385187 ttccggccacagatgatgattccggcgtggtgatcgccgggcggcagcgccgtgctggagaaccaaactcaccctttttaaaaaataaagtcatttttca 19385088  T
Q  97 acatccattttcgttttaaagccaaatccgatctcggatcgcgcaaaaatacaacgagaaggagtagatctaaagattaaaatcagttcgctcctcttct 196  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||   ||||||||| |||||    
T  19385087 acatccattttctttttaaagccaaatccgaactcggatcgcgcaaaaacacaacgagaatgagtagatctaaatattaaaactggttcgctccgcttct 19384988  T
Q  197 tccctcacgttttcttcttcttct 220  Q
    ||||||  ||||||||||||||||    
T  19384987 tccctcgtgttttcttcttcttct 19384964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 8718388 - 8718527
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||    
T  8718388 ggcggcaccgtgccggagaaccaaactcaccctttttaaaaactaaagccatttttcaacattcattttcgttttaaagccaaattcgaactcggatcgc 8718487  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  8718488 gcaaaaacacaacgagaaggagtagatctaaagattaaaa 8718527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 9070275 - 9070414
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||    
T  9070275 ggcggcaccgtgccggagaaccaaactcaccctttttaaaaactaaagccatttttcaacattcattttcgttttaaagccaaattcgaactcggatcgc 9070374  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  9070375 gcaaaaacacaacgagaaggagtagatctaaagattaaaa 9070414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 45256174 - 45256400
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgctggc-------ggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttt 93  Q
    ||||||||||||| ||||||||||| || |||||||| |||       |||||||| ||||||||||||| ||| |||||||||||||||||| ||||||    
T  45256174 ttccggccacacaggatgattccggcgcggtggtcgccggccagaggcggcgccgtgccggagaaccaaattcatcctttttaaaaactaaagccatttt 45256273  T
Q  94 tcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaaaatacaacgagaaggagtagatctaaagattaaaatcagttcgctcctct 193  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||||    
T  45256274 tcaacatccattttcgttttaaagccaaatccgaactcggatcgcgcaaaaactcaacgagaaggagtagatctaaagattaaaaccggttcgctcctct 45256373  T
Q  194 tcttccctcacgttttcttcttcttct 220  Q
    ||||||||| | |||||||||||||||    
T  45256374 tcttccctcgcattttcttcttcttct 45256400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 22181025 - 22180893
Alignment:
Q  46 ccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaaaa 145  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22181025 ccgtactggagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccattttcgttttaaagccaaatccgaactcggatcgcgcaaaaa 22180926  T
Q  146 tacaacgagaaggagtagatctaaagattaaaa 178  Q
     ||||||||||||||||||||||||||||||||    
T  22180925 cacaacgagaaggagtagatctaaagattaaaa 22180893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 4168637 - 4168776
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  4168637 ggcggcgccgtgctggagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccattttcgttttaaagccaaatccgaactcggatcac 4168736  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  4168737 gcaaaaacacaatgagaaggagtagatctaaagattaaaa 4168776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 18923536 - 18923674
Alignment:
Q  40 gcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcg 139  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  18923536 gcggcgccgtgccggagaaccaaactcaccctttaaaaaaactaaagccatttttcaacatccattttcgttttaaatccaaatccgaagtcggatcgcg 18923635  T
Q  140 caaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  18923636 caaaaacacaacgagaaggagtagatctaaatattaaaa 18923674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 21097402 - 21097536
Alignment:
Q  44 cgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaa 143  Q
    |||||| | ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | |||| |||||    
T  21097402 cgccgtgctggagagccaaactcaccctttttaaaaactaaagccatttttcaacatccattttcgttttaaagccaaatccgaacttgaatcgagcaaa 21097501  T
Q  144 aatacaacgagaaggagtagatctaaagattaaaa 178  Q
    || ||||| |||||||||| |||||||||||||||    
T  21097502 aacacaacaagaaggagtatatctaaagattaaaa 21097536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 178
Target Start/End: Original strand, 27764529 - 27764663
Alignment:
Q  44 cgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaa 143  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||  || || ||||||||||||    
T  27764529 cgccgtgctggagaaccaaactcaccctttttaaaaactaaagccatttttcaacatcaatttttgttttaaagccaaatttgaactgggatcgcgcaaa 27764628  T
Q  144 aatacaacgagaaggagtagatctaaagattaaaa 178  Q
    || |||| |||||  |||||| |||||||||||||    
T  27764629 aacacaatgagaaatagtagacctaaagattaaaa 27764663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 38485457 - 38485329
Alignment:
Q  45 gccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaaa 144  Q
    ||||||||| | |||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  38485457 gccgtaccgaaaaaccaaactcaccctttttaaaaacc-----catttttcaacatccattttcgttttaaagccaaattcgaactcggatcacgcaaaa 38485363  T
Q  145 atacaacgagaaggagtagatctaaagattaaaa 178  Q
    | |||| ||||| |||||||| ||||||||||||    
T  38485362 acacaatgagaatgagtagatttaaagattaaaa 38485329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 51836829 - 51836756
Alignment:
Q  147 acaacgagaaggagtagatctaaagattaaaatcagttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  51836829 acaacgagaaggagtagatctaaagattaaaatcggttcgctcctcttcttccctcgcattttcttcttcttct 51836756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 51836896 - 51836831
Alignment:
Q  51 ccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaa 116  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  51836896 ccggagaaccaaactcaccctttttaaaaattaaagccatttttccacatccattttcgttttaaa 51836831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 27764704 - 27764742
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  27764704 gttcgctcctcttcttccctcgcgttttcttcttcttct 27764742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 21097577 - 21097614
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttc 219  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  21097577 gttcgctcctcttcttccctcgcgttttcttcttcttc 21097614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 4168817 - 4168855
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  4168817 gttcgctcctcttcttccctcgcattttcttcttcttct 4168855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 18923715 - 18923753
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  18923715 gttcgctcctcttcttccctcgtgttttcttcttcttct 18923753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 22180852 - 22180814
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  22180852 gttcgctcctcttcttccctcgtgttttcttcttcttct 22180814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18923485 - 18923521
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgc 37  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  18923485 ttccgaccacacatgatgattccggcgcagtggtcgc 18923521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 18297928 - 18297747
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    ||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  18297928 ggcggcgccgtgctggagaaccaaactcaccctttttaaaaaataaagccatttttcaacatccattttcgttttaaagccaaatccaaactcgggtcgc 18297829  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaatcagttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||    
T  18297828 gcaaaaacacaacgagaaggagtagatctaaagattaaaaccggttcgctcctcttcttccctcgcgttttcttcttcttct 18297747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 20710051 - 20710186
Alignment:
Q  42 ggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgca 141  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  20710051 ggcgtcgtgccggagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccattttccttttaaagccaaattcgaactcggatcgcgca 20710150  T
Q  142 aaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    |||| |||||||||| |||||||||||||||||||||    
T  20710151 aaaacacaacgagaa-gagtagatctaaagattaaaa 20710186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 20710227 - 20710264
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttc 219  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  20710227 gttcgctcctcttcttccctcgcgttttcttcttcttc 20710264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 46573312 - 46573136
Alignment:
Q  44 cgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaa 143  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  46573312 cgccgtgccagagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccattttcgttttaaagccaaatccggactcggatcgcgcaaa 46573213  T
Q  144 aatacaacgagaaggagtagatctaaagattaaaatcagttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    |  |||||||||||||||||||||||||||||||| |  ||| |||||||||||||||| |||||||||||||||||    
T  46573212 agcacaacgagaaggagtagatctaaagattaaaaccgattcactcctcttcttccctcgcgttttcttcttcttct 46573136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 46024306 - 46024445
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||||||||||  ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  46024306 ggcggcgccgtgacggagaatcagactcaccctttttaaaaactaaagccatttttcaacatccattttcgttttaaagccaaatccgaattcggatcgc 46024405  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  46024406 gcaaaaacacaacgagaaggagtagatctaaagattaaaa 46024445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 30429151 - 30429275
Alignment:
Q  41 cggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgc 140  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||    
T  30429151 cggcgccgtgccggagaaccaaactcaccttttttaaaaactaaagccatttttcaacatccattttctttttaaagccaaattcgaactcggatcgcgc 30429250  T
Q  141 aaaaatacaacgagaaggagtagat 165  Q
    ||||| |||||||||||||||||||    
T  30429251 aaaaacacaacgagaaggagtagat 30429275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 30430169 - 30430207
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  30430169 gttcgctcctcttcttccctcgcgttttcttcttcttct 30430207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 46024486 - 46024524
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  46024486 gttcgctcctcttcttccctcgcgttttcttcttcttct 46024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 28070031 - 28069817
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgctggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacat 100  Q
    ||||||||||||||||||||||||  || |||||||  |||  |   || ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28070031 ttccggccacacatgatgattccgacgcggtggtcgtcggc--cagagtgccggagaaccaaagtcaccctttttaaaaactaaagtcatatttcaacat 28069934  T
Q  101 ccattttcgttttaaagccaaatccgatctcggatcgcgcaaaaatacaacgagaaggagtagatctaaagattaaaatcagttcgctcctcttcttccc 200  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |||||   ||||||||||||||||||||||||   |||||||||||||||||||    
T  28069933 ccattttcgttttaaagccaaatccgaactcggatcccgcaaaaacacaac---aaggagtagatctaaagattaaaactggttcgctcctcttcttccc 28069837  T
Q  201 tcacgttttcttcttcttct 220  Q
    || |||||||||||||||||    
T  28069836 tcgcgttttcttcttcttct 28069817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 13363056 - 13363195
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || ||||||||||    
T  13363056 ggcggcgccgtacctgagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccattttcgttttaaagtcaaatctgaactcggatcgc 13363155  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  13363156 gcaaaaacacaacgagaaggagtagatctaaagattaaaa 13363195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 23335490 - 23335351
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  23335490 ggcggcgccgtgccggagaatcaaactcacccttttaaaaaactaaagccatttttcaacattcattttcgttttaaagcctaatccgaactcggatcgc 23335391  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| ||||| |||| |||||||| ||||||||||||    
T  23335390 gcaaaaacacaactagaatgagtagatttaaagattaaaa 23335351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 25017006 - 25016888
Alignment:
Q  53 ggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaaaatacaacg 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||       ||||||| ||||||||||||||||| ||||||    
T  25017006 ggagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccatttttgtttt-------aatccgaactcggatcgcgcaaaaacacaacg 25016914  T
Q  153 agaaggagtagatctaaagattaaaa 178  Q
    || |||||||||||||||||||||||    
T  25016913 aggaggagtagatctaaagattaaaa 25016888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 25016847 - 25016811
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttctt 218  Q
    |||||||||||||||||||||||||||||||||||||    
T  25016847 gttcgctcctcttcttccctcacgttttcttcttctt 25016811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 13363236 - 13363274
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  13363236 gttcgctcctcttcttccctcgcgttttcttcttcttct 13363274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 42512456 - 42512490
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttc 216  Q
    ||||||||||||||||||||| |||||||||||||    
T  42512456 gttcgctcctcttcttccctcgcgttttcttcttc 42512490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 15260635 - 15260496
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||     
T  15260635 ggcggcgccgtgccggagaaccaaactcaccctttttaaaaactaaagccattttccaacatccattttcgttttaaagccaaatccgaactcggatcgt 15260536  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15260535 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 15260496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 39022254 - 39022393
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  39022254 ggcgacgccgtgccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgaactcggatcac 39022353  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  39022354 gcaaaaacacaacgagaaagagtagatctaaagattaaaa 39022393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 32987285 - 32987099
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgctggc----------ggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcat 90  Q
    ||||||||||||||||||||||||| ||||||||||| | |          | |||||| |||||||||||||||||||||||||||||| |||||||||    
T  32987285 ttccggccacacatgatgattccggcgcagtggtcgccgcccagagacggggacgccgtgccggagaaccaaactcaccctttttaaaaattaaagtcat 32987186  T
Q  91 ttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||||||||||||||||||||||| ||||||||| |  |||||||||||||| |||||||||||||||| |||||||||||||||    
T  32987185 ttttcaacatccattttcgttttaaagtcaaatccgaac-aggatcgcgcaaaaacacaacgagaaggagtatatctaaagattaaaa 32987099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 39022431 - 39022471
Alignment:
Q  179 tcagttcgctcctcttcttccctcacgttttcttcttcttc 219  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  39022431 tcagttcgctcctcttcttccctcgcgttttcttcttcttc 39022471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 32987058 - 32987021
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttc 219  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  32987058 gttcgctcctcttcttccctcgcgttttcttcttcttc 32987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 27835 - 28019
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgct-------ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttt 93  Q
    ||||||||||||||||||||||||| || ||||||||        ||| |||  || |||||||||||||||||||||||||||||||||||| ||||||    
T  27835 ttccggccacacatgatgattccggcgcggtggtcgccagccagaggcagcggtgtgccggagaaccaaactcaccctttttaaaaactaaagccatttt 27934  T
Q  94 tcaacatccattttcgttttaaagccaaatccgatctcggatcgcgcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    |||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  27935 tcaacatccattttcgttttaaagccaaatccaaactcggatcacgcaaaaacacaacgagaaggagtagatctaaagattaaaa 28019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 28060 - 28098
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  28060 gttcgctcctcttcttccctcgcgttttcttcttcttct 28098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 13890 - 14025
Alignment:
Q  42 ggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgcgca 141  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||    
T  13890 ggcgtcgtgccggagaaccaaactcaccctttttaaaaactaaagccatttttcaacatccattttccttttaaagccaaattcgaactcggatcgcgca 13989  T
Q  142 aaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    |||| |||||||||| |||||||||||||||||||||    
T  13990 aaaacacaacgagaa-gagtagatctaaagattaaaa 14025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 14066 - 14103
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttc 219  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  14066 gttcgctcctcttcttccctcgcgttttcttcttcttc 14103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 23319871 - 23319731
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    |||| |||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |    
T  23319871 ggcgacgccgtgctggagaaccaaactcaccatttttaaaaactaaagccatttttcaacatccattttcgttttaaagccaaatccaaactcggatcac 23319772  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaat 179  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  23319771 gcaaaaacacaacgagaatgagtagatctaaagattaaaat 23319731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 18057081 - 18057220
Alignment:
Q  39 ggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatcgc 138  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||| |     
T  18057081 ggcggcgccgtgccggaaaaccaaactcacccttcttaaaaactaaattcatttttcaacatccattttcgttttaaagtcaaattcgaactcggattgt 18057180  T
Q  139 gcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  18057181 gcaaaaacacaacgagaatgagtagatctaaagattaaaa 18057220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 178
Target Start/End: Original strand, 45889876 - 45890017
Alignment:
Q  40 gcggcgccgtaccggagaaccaaactcacccttt---ttaaaaactaaagtcatttttcaacatccattttcgttttaaagccaaatccgatctcggatc 136  Q
    ||||||||||  ||||||||||||||| ||||||   ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  45889876 gcggcgccgtctcggagaaccaaactcgccctttattttaaaaagtaaagccatttttcaacatccgttttcgttttaaagccaaatccgaactcagatc 45889975  T
Q  137 gcgcaaaaatacaacgagaaggagtagatctaaagattaaaa 178  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  45889976 gcgcaaaaacacaacgagaatgagtagatctaaagattaaaa 45890017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 18057261 - 18057298
Alignment:
Q  182 gttcgctcctcttcttccctcacgttttcttcttcttc 219  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  18057261 gttcgctcctcttcttccctcgcattttcttcttcttc 18057298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23319922 - 23319886
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgc 37  Q
    ||||||||||||||||||||||||| || ||||||||    
T  23319922 ttccggccacacatgatgattccggcgcggtggtcgc 23319886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 25093 - 24981
Alignment:
Q  1 ttccggccacacatgatgattccggtgcagtggtcgctggcggcgccgtaccggagaaccaaactcaccctttttaaaaactaaagtcatttttcaacat 100  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  25093 ttccggccacacatgatgattccggcgcagtggtcgccggcggcgccgtgccggagaaataaactcaccctttttaaaaactaaagccatttttcaacat 24994  T
Q  101 ccattttcgtttt 113  Q
     ||||||||||||    
T  24993 tcattttcgtttt 24981  T

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Target: scaffold0238; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 24940 - 24884
Alignment:
Q  164 atctaaagattaaaatcagttcgctcctcttcttccctcacgttttcttcttcttct 220  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  24940 atctaaagattaaaatcggttcgctcctcttcttccctcgcgttttcttcttcttct 24884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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