View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7219_low_16 (Length: 214)

Name: NF7219_low_16
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7219_low_16
NF7219_low_16
[»] scaffold0055 (17 HSPs)
scaffold0055 (1-196)||(12300-12495)
scaffold0055 (1-198)||(34418-34614)
scaffold0055 (1-198)||(53590-53786)
scaffold0055 (1-198)||(74590-74791)
scaffold0055 (1-198)||(43204-43405)
scaffold0055 (1-198)||(19614-19815)
scaffold0055 (1-198)||(55918-56119)
scaffold0055 (1-198)||(35542-35731)
scaffold0055 (6-60)||(11363-11417)
scaffold0055 (5-60)||(11191-11246)
scaffold0055 (5-60)||(18699-18754)
scaffold0055 (5-60)||(30004-30059)
scaffold0055 (5-60)||(36591-36646)
scaffold0055 (5-60)||(44253-44308)
scaffold0055 (5-60)||(56978-57033)
scaffold0055 (5-60)||(75640-75695)
scaffold0055 (5-60)||(30178-30233)
[»] scaffold0052 (16 HSPs)
scaffold0052 (1-196)||(72040-72235)
scaffold0052 (1-198)||(61450-61646)
scaffold0052 (1-198)||(3496-3697)
scaffold0052 (1-198)||(53524-53725)
scaffold0052 (1-198)||(18021-18222)
scaffold0052 (1-198)||(41512-41713)
scaffold0052 (1-156)||(30315-30474)
scaffold0052 (6-60)||(73118-73172)
scaffold0052 (5-60)||(2581-2636)
scaffold0052 (5-60)||(17117-17172)
scaffold0052 (5-60)||(40598-40653)
scaffold0052 (5-60)||(54582-54637)
scaffold0052 (5-60)||(66006-66061)
scaffold0052 (5-60)||(73289-73344)
scaffold0052 (5-60)||(42543-42598)
scaffold0052 (5-60)||(65832-65887)
[»] scaffold0021 (10 HSPs)
scaffold0021 (1-198)||(95813-96010)
scaffold0021 (1-198)||(49196-49397)
scaffold0021 (1-198)||(39276-39472)
scaffold0021 (10-169)||(34511-34669)
scaffold0021 (1-198)||(50282-50478)
scaffold0021 (5-60)||(41085-41140)
scaffold0021 (6-60)||(51426-51480)
scaffold0021 (5-57)||(40919-40971)
scaffold0021 (5-60)||(51597-51652)
scaffold0021 (5-58)||(40745-40798)
[»] scaffold0152 (3 HSPs)
scaffold0152 (5-154)||(19161-19309)
scaffold0152 (5-154)||(33403-33551)
scaffold0152 (5-154)||(37987-38135)
[»] scaffold0515 (1 HSPs)
scaffold0515 (5-154)||(11591-11739)
[»] chr6 (1 HSPs)
chr6 (5-154)||(9477475-9477623)
[»] chr2 (1 HSPs)
chr2 (130-198)||(30422382-30422450)
[»] chr5 (1 HSPs)
chr5 (5-143)||(21098529-21098666)
[»] scaffold1084 (1 HSPs)
scaffold1084 (5-60)||(2879-2934)


Alignment Details
Target: scaffold0055 (Bit Score: 168; Significance: 3e-90; HSPs: 17)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 12495 - 12300
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12495 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattcgccgaagaaacgaaaaagcaaaccccccgtttgg 12396  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacct 196  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||    
T  12395 ctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaaggtctagtccaggccgcgaagaaaaatttcaaacgggtatcacct 12300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 34418 - 34614
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    |||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34418 ccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaacccc-cgtttgg 34516  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacctta 198  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||||||||    
T  34517 ctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacctta 34614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 53590 - 53786
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    |||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53590 ccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaacccc-cgtttgg 53688  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacctta 198  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||||||||    
T  53689 ctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacctta 53786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 74590 - 74791
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  74590 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccccgtttgg 74688  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||| | ||||| | |||||||||||||||    
T  74689 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 74788  T
Q  196 tta 198  Q
    |||    
T  74789 tta 74791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 43204 - 43405
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43204 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccccgtttgg 43302  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||| | ||||| | || ||||||||||||    
T  43303 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccagaccggtatgacc 43402  T
Q  196 tta 198  Q
    |||    
T  43403 tta 43405  T

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Target: scaffold0055; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19815 - 19614
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19815 ccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcgtcattagccgaagaaacgaaaaagcaaac-ccccgtttgg 19717  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||| | ||||| | |||||||||||||||    
T  19716 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 19617  T
Q  196 tta 198  Q
    |||    
T  19616 tta 19614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 55918 - 56119
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  55918 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-ccctcgtttgg 56016  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||| | |||||||||||| | ||||| | |||||||||||||||    
T  56017 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtgtagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 56116  T
Q  196 tta 198  Q
    |||    
T  56117 tta 56119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35542 - 35731
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    |||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35542 ccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccccgtttgg 35640  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacctta 198  Q
    |||| ||||||||||||||||||||||| |||||||||||       ||||||||| |||||||||||| | ||||| | ||||||||||||||||||    
T  35641 ctcccgaattgcaaaatgccaccttgccttggcttggcat-------ggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacctta 35731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 11417 - 11363
Alignment:
Q  6 gagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  11417 gagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 11363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 11246 - 11191
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  11246 cgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcg 11191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 18754 - 18699
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  18754 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 18699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 30059 - 30004
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  30059 cgagaaattttggcaattttgcacgcgggaatcgtaaactgcgaatattttaagcg 30004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 36591 - 36646
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  36591 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 36646  T

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Target: scaffold0055; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 44253 - 44308
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  44253 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 44308  T

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Target: scaffold0055; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 56978 - 57033
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  56978 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 57033  T

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Target: scaffold0055; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 75640 - 75695
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||    
T  75640 cgagaaattttggcaattttgcacgtgggaatcgttaactgcgaatatcttaagcg 75695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 30233 - 30178
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||  |||| |||||||||||||||||| ||||||||||||| ||||||    
T  30233 cgagaaatttgggcaattttgcacgcgggaatcgtcaactgcgaatattctaagcg 30178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 168; Significance: 3e-90; HSPs: 16)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 72040 - 72235
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  72040 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattcgccgaagaaacgaaaaagcaaaccccccgtttgg 72139  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacct 196  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||    
T  72140 ctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaaggtctagtccaggccgcgaagaaaaatttcaaacgggtatcacct 72235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 61646 - 61450
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    |||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  61646 ccagcgagaaattttagcaaattttcacgtgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccc-gtttgg 61548  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacctta 198  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||||||||    
T  61547 ctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacctta 61450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 3697 - 3496
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3697 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaac-ccccgtttgg 3599  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||| | ||||| | |||||||||||||||    
T  3598 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 3499  T
Q  196 tta 198  Q
    |||    
T  3498 tta 3496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 53524 - 53725
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  53524 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-ccctcgtttgg 53622  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||| | ||||| | |||||||||||||||    
T  53623 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 53722  T
Q  196 tta 198  Q
    |||    
T  53723 tta 53725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 18222 - 18021
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| | |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18222 ccagcgagaaattttggaaaatttgcacgcgggattcgttaattgccaatattttaagcgtcattagccgaagaaacgaaaaagcaaac-ccccgtttgg 18124  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||| | ||||| | |||||||||||||||    
T  18123 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 18024  T
Q  196 tta 198  Q
    |||    
T  18023 tta 18021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 41713 - 41512
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  41713 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-ccctcgtttgg 41615  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||| | |||||||||||| | ||||| | |||||||||||||||    
T  41614 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtgtagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 41515  T
Q  196 tta 198  Q
    |||    
T  41514 tta 41512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 30315 - 30474
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30315 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccccgtttgg 30413  T
Q  101 ctccggaattgcaaaatgccaccttgccctgg-----cttggcatgggcaggggaaggtct 156  Q
    |||| ||||||||||||||||||||||| |||     ||||||||||||||||||||||||    
T  30414 ctcccgaattgcaaaatgccaccttgccttggctaaacttggcatgggcaggggaaggtct 30474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 73118 - 73172
Alignment:
Q  6 gagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  73118 gagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 73172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 2636 - 2581
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  2636 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 2581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 17172 - 17117
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  17172 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 17117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 40653 - 40598
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  40653 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 40598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 54582 - 54637
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  54582 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatatcttaagcg 54637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 66006 - 66061
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  66006 cgagaaattttggcaattttgcacgcgggaatcgtaaactgcgaatattttaagcg 66061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 73289 - 73344
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  73289 cgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcg 73344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 42543 - 42598
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||    
T  42543 cgagaaattttggcaattttgcacgtgggaatcgttaactgcgaatatcttaagcg 42598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 65832 - 65887
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||  |||| |||||||||||||||||| ||||||||||||| ||||||    
T  65832 cgagaaatttgggcaattttgcacgcgggaatcgtcaactgcgaatattctaagcg 65887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 146; Significance: 4e-77; HSPs: 10)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 95813 - 96010
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95813 ccagcgagaaattttagcaaatttgcacgcgggattcgttacttgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 95912  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacctta 198  Q
    |||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||| | ||| |||||  | ||||||||||||||||||||||||||    
T  95913 ctcccgaattgcaaaatgtcaccttgccttggcttggcacgggcaggggaaggtctagcccaagccgcaaaaaaaaatttcaaaccggtatgacctta 96010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 49196 - 49397
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49196 ccagcgagaaattttggcaaatttgcacgcgggattcgttaattgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaa-cccccgtttgg 49294  T
Q  101 ctccggaattgcaaaatgccaccttgc-----cctggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacc 195  Q
    |||| ||||||||||||||||||||||     | ||||||||||||||||||||||||||| |||||||||||| | ||||| | |||||||||||||||    
T  49295 ctcccgaattgcaaaatgccaccttgccttggcttggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacc 49394  T
Q  196 tta 198  Q
    |||    
T  49395 tta 49397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39276 - 39472
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| ||||||    
T  39276 ccagcgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagctttattagccgaagaaacgaaaaagcaaa-cccctgtttgg 39374  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcg-gagaaaaatttcaaaccggtatgacctta 198  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||  | ||||||||| ||||||||||||||||    
T  39375 ctcccgaattgcaaaatgccaccttgccttggcttggcatgggcaggggaaggtctcgtccaggccacgaaacaaaaatttc-aaccggtatgacctta 39472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 34511 - 34669
Alignment:
Q  10 aattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctccggaat 109  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  34511 aattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcttcattagccgaagaaacgaaaaagcaaacccccc-tttggctcccgaat 34609  T
Q  110 tgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcg 169  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  34610 tgcaaaatgccaccttgccttggcttggcatgggcaggggaaggtctaggccaggccgcg 34669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 50282 - 50478
Alignment:
Q  1 ccagcgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttgg 100  Q
    |||| |||| ||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  50282 ccagagagagattttggcaattatgcacgcggaaatcgttaactgcgaatattttaagcgtcattagctgaagaaacgaaaaagcaaa-cccccgtttgg 50380  T
Q  101 ctccggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggtctggtccaggccgcg-gagaaaaatttcaaaccggtatgacctta 198  Q
    |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |  | ||||||||| ||||||||||||||||    
T  50381 ctcccgaattgcaacatgccaccttgccttggcttggcatgggcaggggaaggtctagtccaggctgagaaacaaaaatttc-aaccggtatgacctta 50478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 41085 - 41140
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  41085 cgagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 41140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 51426 - 51480
Alignment:
Q  6 gagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  51426 gagaaattttggcaattttgcacgcgggaatcgttaactgcgaatattttaagcg 51480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 40919 - 40971
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaa 57  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  40919 cgagaaattttggcaagtttgcacgcgggaatcgttaactgcgaatattttaa 40971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 51597 - 51652
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  51597 cgagaaattttggcaattttgcatgcgggaatcgttaactgcgaatattttaagcg 51652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 40745 - 40798
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaag 58  Q
    ||||||||||| || | |||||||| | ||||||||||||||||||||||||||    
T  40745 cgagaaattttggcgattttgcacgagagaatcgttaactgcgaatattttaag 40798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 19309 - 19161
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctcc 104  Q
    ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| |||||| |||| ||||  |||||||||    
T  19309 cgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaaacaaa-ccccaatttggctcc 19211  T
Q  105 ggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggt 154  Q
     ||||||||||||| | ||||||| ||||||||||||||||  |||||||    
T  19210 cgaattgcaaaatgtcgccttgccgtggcttggcatgggcaaaggaaggt 19161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 33403 - 33551
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctcc 104  Q
    ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| |||||| |||| ||||  |||||||||    
T  33403 cgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaaacaaa-ccccaatttggctcc 33501  T
Q  105 ggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggt 154  Q
     ||||||||||||| | ||||||| ||||||||||||||||  |||||||    
T  33502 cgaattgcaaaatgtcgccttgccgtggcttggcatgggcaaaggaaggt 33551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 38135 - 37987
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctcc 104  Q
    ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| |||||| |||| ||||  |||||||||    
T  38135 cgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaaacaaa-ccccaatttggctcc 38037  T
Q  105 ggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggt 154  Q
     ||||||||||||| | ||||||| ||||||||||||||||  |||||||    
T  38036 cgaattgcaaaatgtcgccttgccgtggcttggcatgggcaaaggaaggt 37987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 11739 - 11591
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctcc 104  Q
    ||||||||||| || |||||||||| |||| ||||| | |||||||||||||||||||| |||||||||||| |||||| |||| ||||  |||||||||    
T  11739 cgagaaattttggcgaatttgcacgtgggattcgtttattgcgaatattttaagcgtcaatagccgaagaaatgaaaaaacaaa-ccccaatttggctcc 11641  T
Q  105 ggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggt 154  Q
     ||||| ||||||| | ||||||| ||||||||||||||||  |||||||    
T  11640 cgaattccaaaatgtcgccttgccgtggcttggcatgggcaaaggaaggt 11591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 9477475 - 9477623
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctcc 104  Q
    ||||||| ||| |||  |||||||| ||||   ||||| | |||||||||||||||||| |||||||||||| |||||| |||| ||||  |||||||||    
T  9477475 cgagaaactttggcatttttgcacgagggatgagttaattacgaatattttaagcgtcaatagccgaagaaatgaaaaaacaaa-ccccaatttggctcc 9477573  T
Q  105 ggaattgcaaaatgccaccttgccctggcttggcatgggcaggggaaggt 154  Q
     ||||||||||||| | ||||||| ||||||||||||||||  |||||||    
T  9477574 cgaattgcaaaatgtcgccttgccgtggcttggcatgggcaaaggaaggt 9477623  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 30422382 - 30422450
Alignment:
Q  130 tggcttggcatgggcaggggaaggtctggtccaggccgcggagaaaaatttcaaaccggtatgacctta 198  Q
    ||||||||||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||||||||    
T  30422382 tggcttggcatgggcaggggaaggtctagtccaggccgcgaaaaaaaaatccaaaccggtatgacctta 30422450  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 21098529 - 21098666
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcgtcattagccgaagaaacgaaaaagcaaaccccccgtttggctcc 104  Q
    ||||||||||| |||| |||||| | | || || |||| | |||||||||||||||||| |||||||| | | |||||| |||| |||  ||||| ||||    
T  21098529 cgagaaattttggcaattttgcatgagagattcattaattacgaatattttaagcgtcaatagccgaatatatgaaaaaacaaa-ccctagtttgcctcc 21098627  T
Q  105 ggaattgcaaaatgccaccttgccctggcttggcatggg 143  Q
     ||||||||||||||| | | | | ||||||||||||||    
T  21098628 cgaattgcaaaatgccgcatcgtcgtggcttggcatggg 21098666  T

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Target: scaffold1084 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 2934 - 2879
Alignment:
Q  5 cgagaaattttagcaaatttgcacgcgggaatcgttaactgcgaatattttaagcg 60  Q
    ||||||||||| |||| |||||| |||| |||||| ||||| ||||||||||||||    
T  2934 cgagaaattttggcaattttgcaggcggaaatcgtcaactgtgaatattttaagcg 2879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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