View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7219_low_18 (Length: 203)
Name: NF7219_low_18
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7219_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 38867190 - 38867357
Alignment:
| Q |
20 |
catatagtgaatatgagaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggtacttttagtaacactcattcaatctcttttcatt |
119 |
Q |
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| T |
38867190 |
catatagtgaatatgtgaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggtacttttagtaacactaattcaatctcttttcatt |
38867289 |
T |
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| Q |
120 |
tgacaattgaataatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttcat |
187 |
Q |
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| T |
38867290 |
tgacaattgaataatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttcat |
38867357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 38805855 - 38805692
Alignment:
| Q |
24 |
tagtgaatatgagaagttcctgcttcaatgaatgaaacagaccaaaacattatcaaatcggtacttttagtaacactcattcaatctcttttcatttgac |
123 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
38805855 |
tagtgagtatgtgaagttcctgcttcaatgaatgaaacagaccaaagcataatcaaatgggtacttttagtaacactccttcaatcccttttcatttgac |
38805756 |
T |
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| Q |
124 |
aattgaat-aatatgtcaaatgacaattggcaaaaaagaatgcattattgagtcactcagttca |
186 |
Q |
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| T |
38805755 |
aattgaataaatatgtcaaatgacaattggcaaaaaagaatgcactattgagtcactcagttca |
38805692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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