View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7219_low_2 (Length: 565)

Name: NF7219_low_2
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7219_low_2
NF7219_low_2
[»] chr6 (33 HSPs)
chr6 (23-561)||(4490357-4490896)
chr6 (44-234)||(4484247-4484437)
chr6 (323-561)||(4504399-4504639)
chr6 (39-242)||(4504693-4504898)
chr6 (346-561)||(3171654-3171871)
chr6 (440-561)||(4480702-4480823)
chr6 (447-552)||(4617038-4617143)
chr6 (440-552)||(4625960-4626072)
chr6 (450-561)||(4592250-4592361)
chr6 (450-552)||(4516340-4516442)
chr6 (450-552)||(4585655-4585757)
chr6 (456-561)||(4613720-4613825)
chr6 (450-550)||(4601808-4601908)
chr6 (450-552)||(4560525-4560627)
chr6 (440-561)||(4492964-4493085)
chr6 (450-551)||(4579451-4579552)
chr6 (440-527)||(4267202-4267289)
chr6 (450-552)||(4570991-4571093)
chr6 (440-552)||(4622151-4622263)
chr6 (450-561)||(4563730-4563841)
chr6 (446-552)||(4568068-4568177)
chr6 (440-552)||(4256623-4256735)
chr6 (441-552)||(4260165-4260276)
chr6 (450-552)||(4598190-4598292)
chr6 (440-537)||(4392052-4392149)
chr6 (440-552)||(4461132-4461244)
chr6 (450-522)||(4557144-4557216)
chr6 (450-561)||(4505876-4505987)
chr6 (450-552)||(4574327-4574429)
chr6 (440-552)||(4469812-4469924)
chr6 (440-483)||(4457644-4457687)
chr6 (450-561)||(4515123-4515234)
chr6 (450-515)||(4299788-4299853)
[»] chr8 (3 HSPs)
chr8 (450-552)||(1674245-1674347)
chr8 (450-545)||(20863861-20863956)
chr8 (454-490)||(16686340-16686376)
[»] chr5 (2 HSPs)
chr5 (450-552)||(28000110-28000212)
chr5 (440-552)||(24103008-24103120)
[»] scaffold0477 (1 HSPs)
scaffold0477 (440-548)||(4701-4809)
[»] scaffold0288 (1 HSPs)
scaffold0288 (450-561)||(3721-3832)
[»] chr7 (1 HSPs)
chr7 (440-552)||(3086429-3086541)
[»] chr3 (1 HSPs)
chr3 (450-552)||(1281133-1281235)


Alignment Details
Target: chr6 (Bit Score: 466; Significance: 0; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 23 - 561
Target Start/End: Complemental strand, 4490896 - 4490357
Alignment:
Q  23 tgcagcggttcaagtcaaatctaacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcattt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4490896 tgcagcggttcaagtcaaatctaacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcattt 4490797  T
Q  123 attcttgctaaaacagaatattcacaccaatttgtccaattcatattggcgaagctcttggttttctttcagcgctcaagtggatttatgagctaaattt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4490796 attcttgctaaaacagaatattcacaccaatttgtccaattcatattggcgaagctcttggttttctttcggcgctcaagtggatttatgagctaaattt 4490697  T
Q  223 ggaacctgtggatttataaagcttcccatgatgttattacataaaacaaaagagcttcacttagtgttgaacccttttgaaacaatgcattgtnnnnnnn 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||           
T  4490696 ggaacctgtggatttataaagcttcccatgatgttattacataaaacaaaagatcttcacttagcgttgaacccttttgaaacaatgcattgtaaaaaaa 4490597  T
Q  323 tacaaggtatgtgattgcttacaatttagatataattagaaatctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatcat 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4490596 tacaaggtatgtgattgcttacaatttagatataattagaaatctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatcat 4490497  T
Q  423 ataaatctaa-nnnnnnnaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttc 521  Q
    ||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4490496 ataaatctaatagtttttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttc 4490397  T
Q  522 aactccgtcgccttttgcctcatcttctttcttctctctc 561  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  4490396 aactccgtcgccttttgcctcatcttctttcctttctctc 4490357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 4484247 - 4484437
Alignment:
Q  44 taacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcatttattcttgctaaaacagaata- 142  Q
    ||||||| | ||||||||||| |||||||| | | || ||| ||||||||||| ||||||||||||||||| ||  ||||||||| ||||||||||||      
T  4484247 taacattgatgcttccttttcgtctcataacaactag-ttgaatttggaatttatattagagataaatatgtcgattttattcttcctaaaacagaatgg 4484345  T
Q  143 ttcacaccaatttgtccaattcatattggcgaagctcttggttttctttcagcgctcaagtggatttatgagctaaatttggaacctgtgga 234  Q
    ||||||||||||||| || |||| |||||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||    
T  4484346 ttcacaccaatttgtgcagttcacattggcaaagctcttggttttgtttcagtgctcaagtggattaatgagctaaatttggaaccggtgga 4484437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 323 - 561
Target Start/End: Complemental strand, 4504639 - 4504399
Alignment:
Q  323 tacaaggtatgtgattgcttacaatttagatataattagaaat-ctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatca 421  Q
    ||||| || ||||||||||||||||||||| |||||||| | | |||| | ||||||   ||||||| |||||||||| ||  |||| || |||||||||    
T  4504639 tacaatgtctgtgattgcttacaatttagagataattagcacttctaagttatgcatcaattgtgcttgcaaaagaaacaagttcaataataaaagatca 4504540  T
Q  422 tataaatctaannnnnnn-aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttctt 520  Q
     || |||||||        ||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||| |||||||||||||    
T  4504539 cattaatctaatattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttctt 4504440  T
Q  521 caactccgtcgccttttgcctcatcttctttcttctctctc 561  Q
    ||||||| | |||||||||||||||||||||| | ||||||    
T  4504439 caactccatggccttttgcctcatcttctttcctttctctc 4504399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 39 - 242
Target Start/End: Complemental strand, 4504898 - 4504693
Alignment:
Q  39 aaatctaacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcatttattcttgctaaaacag 138  Q
    |||| ||||||| |||||||||||||| ||||||| | ||| |||||||||  |||||||| |||||||||||||||||| || ||| || |||||||||    
T  4504898 aaatgtaacattgacgcttccttttctgctcataacaacaaagttgtatttcaaatttgtagtagagataaatatggcgctttaattttttctaaaacag 4504799  T
Q  139 aat-attcacaccaatttgtccaattcatattggcgaagctcttggttttctttcagcgctc-aagtggatttatgagctaaatttggaacctgtggatt 236  Q
    |||  || |||||||||||| ||||||  ||||| |||||||||||||||||||| |||| | ||||||| || ||| ||||||||||||||  ||||||    
T  4504798 aatggttgacaccaatttgtgcaattcgcattggtgaagctcttggttttctttcggcgcacaaagtggacttgtgaactaaatttggaaccgatggatt 4504699  T
Q  237 tataaa 242  Q
    ||||||    
T  4504698 tataaa 4504693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 346 - 561
Target Start/End: Original strand, 3171654 - 3171871
Alignment:
Q  346 atttagatataattagaaat-ctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatcatataaatctaannnnnnn-aagc 443  Q
    |||||||||||||||||| | |||||| ||||||| |||||||| ||||||||||||||  ||| |||||||||||| || |||||||        ||||    
T  3171654 atttagatataattagaacttctaaattatgcattatttgtgcttgcaaaagaaataaatccaataagaaaagatcacattaatctaatattgtttaagc 3171753  T
Q  444 atgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctca 543  Q
    | ||| |||||||||||||| ||||||||||||||||||| |||||| | ||| || | |||| |||||||||||||||||||| | ||| |||||||||    
T  3171754 aagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccctttgcctca 3171853  T
Q  544 tcttctttcttctctctc 561  Q
    ||||||||| | ||||||    
T  3171854 tcttctttcctttctctc 3171871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 440 - 561
Target Start/End: Original strand, 4480702 - 4480823
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||  |||| |||| |||| ||||| |||||||||||||| | |||||||||    
T  4480702 aagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggccttttgc 4480801  T
Q  540 ctcatcttctttcttctctctc 561  Q
     |||||||||||| | ||||||    
T  4480802 ttcatcttctttcctttctctc 4480823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 447 - 552
Target Start/End: Original strand, 4617038 - 4617143
Alignment:
Q  447 acatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatct 546  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||  |||| ||||||||| |||||||||||||||||||| | ||||||||| |||| |    
T  4617038 acatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttgcttcattt 4617137  T
Q  547 tctttc 552  Q
    ||||||    
T  4617138 tctttc 4617143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 440 - 552
Target Start/End: Original strand, 4625960 - 4626072
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||| |||||| ||||||| ||| ||||  ||||||||||||| ||||||| | ||  |||||||| |||||||||||||||||||| | |||||||||    
T  4625960 aagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttttgc 4626059  T
Q  540 ctcatcttctttc 552  Q
    |||||||||||||    
T  4626060 ctcatcttctttc 4626072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 4592250 - 4592361
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    ||||| |||| ||||||||||||||| ||||||| ||| ||  |||||||||||||| |||||||||||||||||||  | ||||||| |||||||||||    
T  4592250 tccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttct 4592349  T
Q  550 ttcttctctctc 561  Q
    ||| | ||||||    
T  4592350 ttcctttctctc 4592361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 4516340 - 4516442
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||| ||||||||||  ||||||| ||||||  |||| |||| |||| |||||||||||||||| ||| | |||||||||||||||||||    
T  4516340 tccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggccttttgcctcatcttct 4516439  T
Q  550 ttc 552  Q
    |||    
T  4516440 ttc 4516442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 4585655 - 4585757
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||| |||||||| |||||||||| ||| ||  ||||||||| |||| | |||||||||||||||||  | |||||||||||||||||||    
T  4585655 tccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttttgcctcatcttct 4585754  T
Q  550 ttc 552  Q
    |||    
T  4585755 ttc 4585757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 456 - 561
Target Start/End: Complemental strand, 4613825 - 4613720
Alignment:
Q  456 atcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttcttc 555  Q
    |||||||||||||||||||| ||||||| ||| ||  ||||||||| |||| |||||||||||||||||||  | |||||||||||||| ||||||| |     
T  4613825 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgccttttgcctcattttctttcctt 4613726  T
Q  556 tctctc 561  Q
    ||||||    
T  4613725 tctctc 4613720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 550
Target Start/End: Original strand, 4601808 - 4601908
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||| |||||||||| |||| ||||||||| |||||| ||||| ||| |||||  |||| |||||||||||||| | |||||||||||||||||||    
T  4601808 tccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggccttttgcctcatcttct 4601907  T
Q  550 t 550  Q
    |    
T  4601908 t 4601908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 4560525 - 4560627
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||| ||||||||||||||||||| ||| ||  ||||||||| | || | ||||| ||||||| |||| | |||||||||||||||||||    
T  4560525 tccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcctcatcttct 4560624  T
Q  550 ttc 552  Q
    |||    
T  4560625 ttc 4560627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 440 - 561
Target Start/End: Original strand, 4492964 - 4493085
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||| ||||||||| |||||||||||||||||||||||||||| ||||||  ||   |||| |||| |||||||||| ||||||||||| || |||  |    
T  4492964 aagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtggcttttctc 4493063  T
Q  540 ctcatcttctttcttctctctc 561  Q
    |||||||| |||| | ||||||    
T  4493064 ctcatcttgtttcctttctctc 4493085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 551
Target Start/End: Original strand, 4579451 - 4579552
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||| |||||||||||||||||||  || ||  ||||||||| |||| |  ||||||||||||||||  | |||||||||||||||||||    
T  4579451 tccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttct 4579550  T
Q  550 tt 551  Q
    ||    
T  4579551 tt 4579552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 440 - 527
Target Start/End: Complemental strand, 4267289 - 4267202
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactcc 527  Q
    ||||||||| |||||||| ||||||||||||||||||||||||  ||||||  |||| ||||||||  |||||||| |||||||||||    
T  4267289 aagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactcc 4267202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 4570991 - 4571093
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||| ||||||||||||||||||| ||||||  ||||||||| |||| | ||||||||||||| |||| |    |||| |||||||||||    
T  4570991 tccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatatttttcctcatcttct 4571090  T
Q  550 ttc 552  Q
    |||    
T  4571091 ttc 4571093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 552
Target Start/End: Original strand, 4622151 - 4622263
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||||||| |||||||| ||||||||||||||  ||||||||| ||||||  | || ||  ||||  ||||||||| |||||||||| | ||||||||     
T  4622151 aagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgt 4622250  T
Q  540 ctcatcttctttc 552  Q
    |||||||||||||    
T  4622251 ctcatcttctttc 4622263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 4563730 - 4563841
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    ||||| |||||||||||||||||||||||||||| ||| ||   ||||||||| ||| |  | ||||||||||||||  | |||||||||| ||||||||    
T  4563730 tccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttgccgcatcttct 4563829  T
Q  550 ttcttctctctc 561  Q
    ||| | ||||||    
T  4563830 ttcctttctctc 4563841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 446 - 552
Target Start/End: Original strand, 4568068 - 4568177
Alignment:
Q  446 gacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgc---cttcttcttcaactccgtcgccttttgcctc 542  Q
    |||||||||||||||||||||||||||||||||||||  | ||||  |||| |||| || | ||||   ||||||||||||||||   ||||||||||||    
T  4568068 gacatccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctc 4568167  T
Q  543 atcttctttc 552  Q
    ||||| ||||    
T  4568168 atcttttttc 4568177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 552
Target Start/End: Complemental strand, 4256735 - 4256623
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||||||| |||||||| |||||||||||||||||  |||||  |||| |  | || ||||||| | ||| |||||||||||| ||| |  ||||||||    
T  4256735 aagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatgaccttttgc 4256636  T
Q  540 ctcatcttctttc 552  Q
    |||||||||||||    
T  4256635 ctcatcttctttc 4256623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 552
Target Start/End: Complemental strand, 4260276 - 4260165
Alignment:
Q  441 agcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcc 540  Q
    |||||||| | |||||| |||||||||||||||||  |||||  ||||    | || ||||||||| |||||||| ||||||||||| |  |||||||||    
T  4260276 agcatgacctgcttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttttgcc 4260177  T
Q  541 tcatcttctttc 552  Q
    ||||||||||||    
T  4260176 tcatcttctttc 4260165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 4598190 - 4598292
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||| || |||||||||||||||| ||| || |||||||| | |||| | |||||| ||||||| ||  | | |||||||||||| ||||    
T  4598190 tccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattttct 4598289  T
Q  550 ttc 552  Q
    |||    
T  4598290 ttc 4598292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 537
Target Start/End: Complemental strand, 4392149 - 4392052
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgcctttt 537  Q
    ||||| ||| |||||||||| |||||||||||||||| |||||  ||||||  |||  |||| ||||  ||||||||||||||||||  |||||||||    
T  4392149 aagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcctttt 4392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 552
Target Start/End: Original strand, 4461132 - 4461244
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||  ||| ||  |||| || | |||| |  |||||||||| || ||| |  ||||||||    
T  4461132 aagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatgaccttttgc 4461231  T
Q  540 ctcatcttctttc 552  Q
    |||||||||||||    
T  4461232 ctcatcttctttc 4461244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 522
Target Start/End: Original strand, 4557144 - 4557216
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttca 522  Q
    |||||||||||||| ||||| ||||||||||||| ||||||  ||||||||| |||| | |||||| ||||||    
T  4557144 tccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 4557216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 561
Target Start/End: Original strand, 4505876 - 4505987
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||| |||||||||||||||||| |||||| ||||||  |||| || | ||||  |||| |||| ||||||||| |  |||||| ||||||||| |    
T  4505876 tccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatgacctttttcctcatcttgt 4505975  T
Q  550 ttcttctctctc 561  Q
    ||| | ||||||    
T  4505976 ttcctttctctc 4505987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 4574327 - 4574429
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||| ||||||||  ||||||||| ||| ||  ||||||||| | || |  |||||||||||| |||  | || ||||||||||||||||    
T  4574327 tccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggctttttgcctcatcttct 4574426  T
Q  550 ttc 552  Q
    |||    
T  4574427 ttc 4574429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 552
Target Start/End: Original strand, 4469812 - 4469924
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||  ||| ||  |||| || | |||| |  |||||||||| |||||| |   ||||| |    
T  4469812 aagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttttcc 4469911  T
Q  540 ctcatcttctttc 552  Q
    |||||||||||||    
T  4469912 ctcatcttctttc 4469924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Original strand, 4457644 - 4457687
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaac 483  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||    
T  4457644 aagcatgacttccttagtcactttgtccaagttcaagtatgaac 4457687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 4515234 - 4515123
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    ||||| ||||||||||||||||||| |||||||   || || ||||| |||| |||  |||||||||| ||||||||| |  |||||| |||||| || |    
T  4515234 tccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccataacctttttcctcattttat 4515135  T
Q  550 ttcttctctctc 561  Q
    ||| | ||||||    
T  4515134 ttcctttctctc 4515123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 515
Target Start/End: Complemental strand, 4299853 - 4299788
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttc 515  Q
    |||||||| |||||||||||||||||||| |||| ||||||  |  | ||||||||| ||||||||    
T  4299853 tccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 1674245 - 1674347
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||| |||||||||||||||| ||| | ||||||||||||||||| |    
T  1674245 tccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggccttttgcctcatctttt 1674344  T
Q  550 ttc 552  Q
    |||    
T  1674345 ttc 1674347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 545
Target Start/End: Complemental strand, 20863956 - 20863861
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatc 545  Q
    |||||||||||||||||||||||||| ||||||| |||  |  |||| |||| |||| |||||||||||||||||||  | | |||||||||||||    
T  20863956 tccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactcatttgtcttttgcctcatc 20863861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 490
Target Start/End: Complemental strand, 16686376 - 16686340
Alignment:
Q  454 taatcactttgtccaagttcatgtatgaactaccacc 490  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  16686376 taatcactttttccaagttcatgtatgaacaaccacc 16686340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 450 - 552
Target Start/End: Complemental strand, 28000212 - 28000110
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||| ||||||| |||||||||||| | ||||||||||||||||| |    
T  28000212 tccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatctttt 28000113  T
Q  550 ttc 552  Q
    |||    
T  28000112 ttc 28000110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 440 - 552
Target Start/End: Original strand, 24103008 - 24103120
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||||||| |||||||| ||||||||||||||||||||||||  ||||||   ||| ||||||||  ||||||||||||| ||||||    ||||||||    
T  24103008 aagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagaccttttgc 24103107  T
Q  540 ctcatcttctttc 552  Q
     ||||| ||||||    
T  24103108 ttcatcgtctttc 24103120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 440 - 548
Target Start/End: Complemental strand, 4809 - 4701
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  |||||    || ||||||||| |||||||||||||||||||| | |||||||||    
T  4809 aagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttttgc 4710  T
Q  540 ctcatcttc 548  Q
    |||||||||    
T  4709 ctcatcttc 4701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 450 - 561
Target Start/End: Complemental strand, 3832 - 3721
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    |||||||| |||||||||| |||||||||||||| ||||||  |||| ||||||||| ||||||||||||| ||||||   |||||||||||||||||||    
T  3832 tccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggccttttgcctcatcttct 3733  T
Q  550 ttcttctctctc 561  Q
    ||| | ||||||    
T  3732 ttcctttctctc 3721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 440 - 552
Target Start/End: Original strand, 3086429 - 3086541
Alignment:
Q  440 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 539  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||  || ||||||||  |||| |||||||| ||||| |   | ||||||    
T  3086429 aagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattttgc 3086528  T
Q  540 ctcatcttctttc 552  Q
    |||||||||||||    
T  3086529 ctcatcttctttc 3086541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 450 - 552
Target Start/End: Original strand, 1281133 - 1281235
Alignment:
Q  450 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 549  Q
    ||||||||||||||||| |||||||||||||||| ||||||  |||| ||||||||| | |||  ||||||||| ||| | |||||||  ||||| ||||    
T  1281133 tccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttctctcatattct 1281232  T
Q  550 ttc 552  Q
    |||    
T  1281233 ttc 1281235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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