View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7219_low_3 (Length: 539)

Name: NF7219_low_3
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7219_low_3
NF7219_low_3
[»] chr8 (6 HSPs)
chr8 (22-534)||(6414360-6414879)
chr8 (25-223)||(37786799-37786996)
chr8 (310-427)||(9487827-9487945)
chr8 (311-390)||(25479871-25479951)
chr8 (238-313)||(44912715-44912791)
chr8 (320-394)||(26794267-26794344)
[»] chr2 (6 HSPs)
chr2 (22-226)||(38099331-38099535)
chr2 (48-223)||(39190823-39190997)
chr2 (23-223)||(302097-302296)
chr2 (286-394)||(40497979-40498092)
chr2 (25-163)||(3461546-3461684)
chr2 (280-394)||(38099178-38099297)
[»] chr4 (9 HSPs)
chr4 (31-215)||(9238286-9238470)
chr4 (22-390)||(26905086-26905480)
chr4 (307-446)||(25170241-25170381)
chr4 (310-377)||(32347596-32347664)
chr4 (23-211)||(5706928-5707114)
chr4 (310-376)||(24520778-24520845)
chr4 (306-394)||(28964811-28964901)
chr4 (280-313)||(24412976-24413009)
chr4 (25-109)||(9881050-9881134)
[»] scaffold1064 (1 HSPs)
scaffold1064 (60-234)||(2242-2416)
[»] scaffold0038 (1 HSPs)
scaffold0038 (23-223)||(49081-49280)
[»] chr6 (3 HSPs)
chr6 (23-223)||(28248919-28249118)
chr6 (52-201)||(29010973-29011122)
chr6 (93-220)||(11186964-11187090)
[»] chr5 (5 HSPs)
chr5 (311-438)||(17156538-17156666)
chr5 (23-163)||(14233874-14234014)
chr5 (314-443)||(31000708-31000839)
chr5 (134-197)||(31000575-31000638)
chr5 (310-397)||(38550081-38550171)
[»] scaffold0019 (1 HSPs)
scaffold0019 (261-394)||(59489-59628)
[»] chr7 (3 HSPs)
chr7 (23-223)||(296832-297032)
chr7 (23-163)||(30380411-30380550)
chr7 (23-163)||(35898368-35898508)
[»] chr3 (2 HSPs)
chr3 (23-211)||(18641159-18641345)
chr3 (305-394)||(1663317-1663408)
[»] chr1 (2 HSPs)
chr1 (23-163)||(50778361-50778501)
chr1 (305-395)||(51119482-51119574)


Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 22 - 534
Target Start/End: Original strand, 6414360 - 6414879
Alignment:
Q  22 tagattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttg 121  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |||| ||||||    
T  6414360 tagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtcctacagaattgcagcttgcagatggttttacaaaggctttg 6414459  T
Q  122 aagcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaaggggg-agtattagaatgttaatacataact- 219  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||||||     
T  6414460 aagcttgatagatttaaacttttgaggaagaaacttgttgttgttaacattcagcagttattaattaaggggggagtattagaatgttaatacataactt 6414559  T
Q  220 ----gttgagatgtaatatattcgttggggaatatattatacccttgggggtataaaatttt-tgacaagttagttaggtaatcaagctaagtttgttag 314  Q
        ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| |||    
T  6414560 aactgtttagatataatatattcgttggggaatatattatacccttgggggtataaaagtttgtcacaagttagttaggtaatcaagctaagtttgatag 6414659  T
Q  315 ttagatagcttattctacaagcaagtgttattttgcctataaaggctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatcaatctc 414  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6414660 ttagatagcttgttctataagcaagtgttattgtgcctataaaggctttgtattgtgaaacttcaagtcttaatgagattacacagttcatatcaatctc 6414759  T
Q  415 tctattcttctctctttcatttttcagttctannnnnnnnatttctcatcttgctaaaaactgcttatttcaataagcacttctgcgcatatgaacacac 514  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6414760 tctattcttctctctttcatttttcagttctattttttttatttctcatcttgctaaaaactgcttatttcaataagcacttctgcgcatatgaacacac 6414859  T
Q  515 tcatatgaacacaggttctg 534  Q
     ||||||||||||| |||||    
T  6414860 gcatatgaacacagtttctg 6414879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 37786996 - 37786799
Alignment:
Q  25 attctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttgaag 124  Q
    |||| |||||||||| |||||||||||||||||| |||||||| |||| || || || ||| || | || ||||  ||||||||| |||||||  |||||    
T  37786996 attccatttcattagagagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaag 37786897  T
Q  125 cttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgttg 223  Q
    ||||| ||||||||| | |||||||| ||| | |||||| |||| || ||| ||||||| |||||||||||||||| |||| |||||  ||||||||||    
T  37786896 cttgacagatttgaattcttgaggaataaattaggtgtttttaatattcagcagttatg-attaagggggagtattggaatattaatcaataactgttg 37786799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 310 - 427
Target Start/End: Original strand, 9487827 - 9487945
Alignment:
Q  310 gttagttagatagcttattctacaagcaagtgttattttgcctataaa-ggctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatc 408  Q
    |||||||||||||||| ||||||||||||||  |||| || ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||      
T  9487827 gttagttagatagcttgttctacaagcaagtaatattgtgtctataaaaggctttgtattgtgaaacttcaagtcttaatgagagtacacaattcataga 9487926  T
Q  409 aatctctctattcttctct 427  Q
    ||||  | |||||||||||    
T  9487927 aatcattatattcttctct 9487945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 25479871 - 25479951
Alignment:
Q  311 ttagttagatagcttattctacaagcaagtgttattttgcctataaagg-ctttgtattgtgaaacttcaagtcttaatga 390  Q
    ||||||| ||||||| || |||||||||||| |||| ||| |||||| | |||||||||||| ||||||||||||||||||    
T  25479871 ttagttaaatagcttgttatacaagcaagtgctattgtgcttataaaagactttgtattgtgcaacttcaagtcttaatga 25479951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 313
Target Start/End: Complemental strand, 44912791 - 44912715
Alignment:
Q  238 cgttggggaatatattatacccttgggggtataaaatttt-tgacaagttagttaggtaatcaagctaagtttgtta 313  Q
    |||| ||| |||||||||||   | ||||||||||| ||| | ||||||||||||||||||| ||||||||||||||    
T  44912791 cgttcgggtatatattatacatattggggtataaaagtttgttacaagttagttaggtaatctagctaagtttgtta 44912715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 26794344 - 26794267
Alignment:
Q  320 tagcttattctacaagcaagtgtta-ttttgcc--tataaaggctttgtattgtgaaacttcaagtcttaatgagatt 394  Q
    |||||| |||||||||||||||||| |||||||  ||||||||||||||| |||| |  ||||  |||||||||||||    
T  26794344 tagcttgttctacaagcaagtgttagttttgcctatataaaggctttgtaatgtgtacattcacttcttaatgagatt 26794267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 38099535 - 38099331
Alignment:
Q  22 tagattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttg 121  Q
    ||||||| ||||||||||||||| ||||||||||||  |||||||  | || |||||||||||| ||||| |||| | | |||| ||| |||| ||||||    
T  38099535 tagattccatttcattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgtagctagcatatggctttacaaaggctttg 38099436  T
Q  122 aagcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgt 221  Q
    |||||||  | ||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||| |||||||||||||||    
T  38099435 aagcttggcatatttgaatttttgaggaagaaacttggtgttgttaacattcagcaattatgaattaagggggagtgttagaatattaatacataactgt 38099336  T
Q  222 tgaga 226  Q
    |||||    
T  38099335 tgaga 38099331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 39190997 - 39190823
Alignment:
Q  48 tgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttgaagcttgatagatttgaacttttgag 147  Q
    ||||||||||| |||||||| |||| || || || ||| || |||| ||||  |||||||||||||||||  |||||||||| ||||||||| | |||||    
T  39190997 tgactaatggaatgattgagctgcactactgccccacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattcttgag 39190898  T
Q  148 gaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgttg 223  Q
    ||||||| | |||||| |||| |||||| ||||||| ||||||||||||||||||||| |||||  ||||||||||    
T  39190897 gaagaaattaggtgtttttaatatgcagcagttatg-attaagggggagtattagaatattaatcaataactgttg 39190823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 302097 - 302296
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||| | ||||| |||||||||||| |||||||| |||| || || || ||| || | || ||||  ||||||||| |||||||  |||    
T  302097 agattcaatttcatttgagagcaggtgactaatggaatgattgagctgcactactgccccacaaaactacaacttgctgatggttttacaaaagcaatga 302196  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgtt 222  Q
    ||||||| ||||||||| | |||||||||||| | |||||| |||| || ||  ||||||| |||||||||||||||| |||| | |||  |||||||||    
T  302197 agcttgacagatttgaattcttgaggaagaaattaggtgtttttaatattcaacagttatg-attaagggggagtattggaatatgaatcaataactgtt 302295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 394
Target Start/End: Original strand, 40497979 - 40498092
Alignment:
Q  286 tagttaggtaatcaagctaagtttgttagtt----agatagcttattctacaagcaagtgttattttgcctataaa-ggctttgtattgtgaaacttcaa 380  Q
    |||||||| |||| |||||||||||||||||    |||| |||| ||||||  ||||||| |||| ||| |||||| |||||||||||||| ||||| ||    
T  40497979 tagttaggaaatctagctaagtttgttagtttgttagattgcttgttctaccggcaagtgctattgtgcatataaaaggctttgtattgtgcaactttaa 40498078  T
Q  381 gtcttaatgagatt 394  Q
     |||||||||||||    
T  40498079 ttcttaatgagatt 40498092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 3461546 - 3461684
Alignment:
Q  25 attctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttgaag 124  Q
    |||| |||| ||||| ||||| |||||||||||| |||||||| |||| ||||| || ||| || |||| ||||  ||||||||| |||| ||  | |||    
T  3461546 attccattttattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaag 3461645  T
Q  125 cttgatagatttgaacttttgaggaagaaacttggtgtt 163  Q
    ||||| | ||||||| | ||||| ||| |||||||||||    
T  3461646 cttgacatatttgaattcttgagaaaggaacttggtgtt 3461684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 38099297 - 38099178
Alignment:
Q  280 acaagttagttaggtaatcaagctaagtttg----ttagttagatagcttattctacaagcaagtgttattttgcctataaa-ggctttgtattgtgaaa 374  Q
    ||||||| |||||| ||||  ||||||||||    ||||||||||| ||| |||||||| |||||  |||| |||||||||| ||||||||||| || ||    
T  38099297 acaagtttgttaggaaatcttgctaagtttggtagttagttagataacttgttctacaaacaagttctattgtgcctataaacggctttgtattatgcaa 38099198  T
Q  375 cttcaagtcttaatgagatt 394  Q
    |||||||||| || ||||||    
T  38099197 cttcaagtctcaacgagatt 38099178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 9238470 - 9238286
Alignment:
Q  31 tttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttgaagcttgat 130  Q
    ||||||| || |||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||  |||||||||||||     
T  9238470 tttcatttggaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgac 9238371  T
Q  131 agatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacat 215  Q
    | ||||||| |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||| | |||||||    
T  9238370 atatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaaggggaagtattagaatatgaatacat 9238286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 390
Target Start/End: Original strand, 26905086 - 26905480
Alignment:
Q  22 tagattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttg 121  Q
    ||||||| | |||||| |||||||  ||| ||||| | |||||||| | ||||||||||||| | || ||||||||| |  ||| ||| |||| ||||||    
T  26905086 tagattccacttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaactgcagcttgcatgtggctttacaaaggctttg 26905185  T
Q  122 aagcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgt 221  Q
    |||||||| | |||| || |||| ||||||||||||||||||||||| ||  || ||||||||||||| |||||||||||| || |||||||||||||||    
T  26905186 aagcttgacaaatttaaatttttaaggaagaaacttggtgttgttaatatttagcagttatgaattaatggggagtattagtatattaatacataactgt 26905285  T
Q  222 tgagatgtaatatattcgttggggaatatattataccc-ttgg-------------------gggtataaaa-tttttgacaagttagttaggtaatcaa 300  Q
    |||||| |||||||   |  |||| || |||||||||| ||||                   |||||||||| ||| | |||||||||||||  |||| |    
T  26905286 tgagatataatatacctgcaggggtatgtattatacccattggagtatatattatacttggggggtataaaagtttgttacaagttagttagaaaatcta 26905385  T
Q  301 gctaagttt----gttagttagatagcttattctacaagcaagtgttattttgcctat-aaaggctttgtattgtgaaacttcaagtcttaatga 390  Q
    |||||||||    |||||||||||||||| ||||| ||||||||| |||| ||||||| ||||||||||||||||| ||||||||||| ||||||    
T  26905386 gctaagtttgttagttagttagatagcttgttctaaaagcaagtgctattatgcctataaaaggctttgtattgtgcaacttcaagtcgtaatga 26905480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 307 - 446
Target Start/End: Original strand, 25170241 - 25170381
Alignment:
Q  307 tttgttagttagatagcttattctacaagcaagtgttattttgcctataaa-ggctttgtattgtgaaacttcaagtcttaatgagattacacagttcct 405  Q
    |||||||||||||||| || ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |    
T  25170241 tttgttagttagatagattgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaaacttcaagtcttaatgagattacagaattcat 25170340  T
Q  406 atcaatctctctattcttctctctttcatttttcagttcta 446  Q
    | |||    |||||||||||||| | |||||||| ||||||    
T  25170341 agcaactattctattcttctctcgtccatttttctgttcta 25170381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 32347664 - 32347596
Alignment:
Q  310 gttagttagatagcttattctacaagcaagtgttattttgcctat-aaaggctttgtattgtgaaactt 377  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||    
T  32347664 gttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaaactt 32347596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 5706928 - 5707114
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||| || || || ||| || | || ||||  ||||| ||| |||| ||  |||    
T  5706928 agattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtga 5707027  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaat 211  Q
    ||||||| | ||||||| || ||||||||||| |  ||||  |||| || ||| ||||||| ||||| |||||||||| |||| |||||    
T  5707028 agcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagttatg-attaa-ggggagtattggaatattaat 5707114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 24520845 - 24520778
Alignment:
Q  310 gttagttagatagcttattctacaagcaagtgttattttgcctat-aaaggctttgtattgtgaaact 376  Q
    |||||||||| ||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||    
T  24520845 gttagttagacagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaaact 24520778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 394
Target Start/End: Complemental strand, 28964901 - 28964811
Alignment:
Q  306 gtttgttagttagatagcttattctacaagcaagtgttat-tttgcctat-aaaggctttgtattgtgaaacttcaagtcttaatgagatt 394  Q
    |||||||||||||||||||| | ||||||||||||||| | ||||| ||| |||||||||||| ||||    ||||| |||||||||||||    
T  28964901 gtttgttagttagatagcttgtactacaagcaagtgttgtatttgcttataaaaggctttgtaatgtgtgcattcaattcttaatgagatt 28964811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 313
Target Start/End: Complemental strand, 24413009 - 24412976
Alignment:
Q  280 acaagttagttaggtaatcaagctaagtttgtta 313  Q
    ||||||||||||||||||| ||||||||||||||    
T  24413009 acaagttagttaggtaatctagctaagtttgtta 24412976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 9881050 - 9881134
Alignment:
Q  25 attctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggtttt 109  Q
    |||| |||| |||||||||||  ||||||||||| ||| |||| |||| |||||||| ||  | ||||| |||| ||||||||||    
T  9881050 attccattttattagggagcagatgactaatggaatgaatgaggtgcaatattgtcccactgagttgcaacttgcagatggtttt 9881134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 2416 - 2242
Alignment:
Q  60 tgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttgaagcttgatagatttgaacttttgaggaagaaacttgg 159  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||  ||||||||||||| | |||| || |||||||||| ||||||||    
T  2416 tgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgaaatattttaatttttgaggaaaaaacttgg 2317  T
Q  160 tgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgttgagatgtaatat 234  Q
    |||||| |||||  || ||||||||||||||||||||||||||||| ||||||||||| || | |||| ||||||    
T  2316 tgttgtgaacattaagcagttatgaattaagggggagtattagaatattaatacataattggttagatataatat 2242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 49081 - 49280
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||||| ||||| |||||||||||| ||||||||||||| || || || ||| || | || ||||  ||||||||| |||||||  |||    
T  49081 agattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtga 49180  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgtt 222  Q
    ||||||| | ||||||| | |||||||||||| | |||||| |||| || ||||||||||| |||||||||||||||| || | |||||  |||||||||    
T  49181 agcttgacaaatttgaattcttgaggaagaaattaggtgttcttaatattcagtagttatg-attaagggggagtattggagtattaatcaataactgtt 49279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 28248919 - 28249118
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||||| ||||| |||||||||||| ||||||||||||| || || || ||| || | || ||||  ||||||||| |||||||  |||    
T  28248919 agattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtga 28249018  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgtt 222  Q
    ||||||| | ||||||| | |||||||||||| | |||||| |||| || ||||||||||| |||||||||||||||| || | |||||  |||||||||    
T  28249019 agcttgacaaatttgaattcttgaggaagaaattaggtgttcttaatattcagtagttatg-attaagggggagtattggagtattaatcaataactgtt 28249117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 29011122 - 29010973
Alignment:
Q  52 taatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttgaagcttgatagatttgaacttttgaggaag 151  Q
    ||||||| || ||||| |||| | |||||||||| || |||| |||| | |||||||| | ||||||||||| ||||| | |||| |  |||| ||||||    
T  29011122 taatggaatggttgagctgcagttttgtcctacagaactgcaacttgcatatggttttactaaagctttgaaacttgacaaatttaagttttttaggaag 29011023  T
Q  152 aaacttggtgttgttaacatgcagtagttatgaattaagggggagtatta 201  Q
    |||||||||||| | |  || ||  ||||||||||||||  |||||||||    
T  29011022 aaacttggtgttttcagtattcaacagttatgaattaagatggagtatta 29010973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 11187090 - 11186964
Alignment:
Q  93 agcttgtagatggttttgcaaaagctttgaagcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaaggg 192  Q
    |||||| |||||||||| |||||||  |||| ||| |   ||||||| |||||||||||||||| ||| || || |  | ||| |||||||| |||||||    
T  11187090 agcttgcagatggttttacaaaagcagtgaaacttcacgtatttgaatttttgaggaagaaactaggtatttttgatgttcagcagttatga-ttaaggg 11186992  T
Q  193 ggagtattagaatgttaatacataactg 220  Q
    ||||||||||||| |||||  |||||||    
T  11186991 ggagtattagaatcttaatcaataactg 11186964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 311 - 438
Target Start/End: Complemental strand, 17156666 - 17156538
Alignment:
Q  311 ttagttagatagcttattctacaagcaagtgttattttgcctataaa-ggctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatca 409  Q
    |||||||||||| || ||||||||||||||| |||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||| | ||| || ||    
T  17156666 ttagttagatagtttgttctacaagcaagtgctattgtgcctataaaaggctttgtattgtgaaatttcatgtcttaatgagattacataattcatagca 17156567  T
Q  410 atctctctattcttctctctttcattttt 438  Q
    ||| |||||||||||| |||| |||||||    
T  17156566 atcactctattcttctttcttccattttt 17156538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 14233874 - 14234014
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||||||||||| |||||||||||| |||||||| |||| |||||||| ||  |  |||| |||| |||||||||| | || ||  | |    
T  14233874 agattccatttcattagggagcaggtgactaatggaatgattgaggtgcaatattgtcccactgagctgcaacttgcagatggttttactaaggcagtaa 14233973  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgtt 163  Q
    | ||||| ||||||||| |||| ||||||||||||||||||    
T  14233974 aacttgacagatttgaattttttaggaagaaacttggtgtt 14234014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 31000708 - 31000839
Alignment:
Q  314 gttagatagcttattctacaagcaagtgttattt-tgcctataaag-gctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatcaat 411  Q
    ||||| |||||| ||||||||||||||| ||||  ||||||||||  ||||||||||||| ||||||||  |||||||||| | |||| ||| ||  |||    
T  31000708 gttagctagcttgttctacaagcaagtgctattgatgcctataaaaagctttgtattgtgtaacttcaaaccttaatgagagtccacaattcatagaaat 31000807  T
Q  412 ctctctattcttctctctttcatttttcagtt 443  Q
    |||||||||||||| ||||||| |||||||||    
T  31000808 ctctctattcttctgtctttcagttttcagtt 31000839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 31000575 - 31000638
Alignment:
Q  134 tttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagt 197  Q
    |||||| |||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||    
T  31000575 tttgaatttttgaggaagaaacttgatgtttttaacattcagcagttatgaattaagggggagt 31000638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 38550171 - 38550081
Alignment:
Q  310 gttagttagatagcttattctacaagcaagtgttattttg--cctataaa-ggctttgtattgtgaaacttcaagtcttaatgagattaca 397  Q
    ||||||| |||||||| |||||||| |||||| |||||||  |||||||| || |||||||||||||||| ||| |||||| |||||||||    
T  38550171 gttagttggatagcttgttctacaaccaagtgctattttgtccctataaaaggttttgtattgtgaaactccaaatcttaaggagattaca 38550081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 261 - 394
Target Start/End: Complemental strand, 59628 - 59489
Alignment:
Q  261 tgggggtataaaatttt-tgacaagttagttaggtaatcaagctaagtttgttagttag----atagcttattctacaagcaagtgttattttgcctata 355  Q
    ||||||||||||| ||| | |||||||||||||| ||||  ||||||||||||||||||    ||||||| |||||||||||||||  ||| ||||||||    
T  59628 tgggggtataaaaatttgttacaagttagttaggaaatcttgctaagtttgttagttagttaaatagcttgttctacaagcaagtgccattgtgcctata 59529  T
Q  356 aa-ggctttgtattgtgaaacttcaagtcttaatgagatt 394  Q
    || |||||||||||||| ||||||||||||||||||||||    
T  59528 aaaggctttgtattgtgcaacttcaagtcttaatgagatt 59489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 296832 - 297032
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||||||||||| |||||||||||| |||| |||||||| || || || ||| || | || ||||| ||||||||| |||||||   ||    
T  296832 agattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggttttacaaaagcagcga 296931  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtg-ttgttaacatgcagtagttatgaattaagggggagtattagaatgttaatacataactgt 221  Q
    ||||||| | ||||||| | |||||||||||| | |||| || |||| || ||| ||||||| ||||||||||||||||||||| |||||  ||||||||    
T  296932 agcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatg-attaagggggagtattagaatattaatcaataactgt 297030  T
Q  222 tg 223  Q
    ||    
T  297031 tg 297032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 30380411 - 30380550
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||||| ||||| |||||||||||| |||||||| | || || | | | ||| || |||| |||| | |||| ||| |||||||  |||    
T  30380411 agattccatttcattagagagcaggtgactaatggaatgattgagctacactactatacaacagaactgcaacttgcatatgg-tttacaaaagcagtga 30380509  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgtt 163  Q
    ||||||| | |||| || |||||||||| ||||||||||||    
T  30380510 agcttgacatattttaatttttgaggaaaaaacttggtgtt 30380550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 35898368 - 35898508
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||||| ||||| |||||||||||| |||||||| |||| |||||  | ||  || |||| ||||   |||| |||  ||| ||  |||    
T  35898368 agattccatttcattagagagcaggtgactaatggaatgattgagctgcactattgctccacggaactgcaacttgcttatggctttaaaaaggcagtga 35898467  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgtt 163  Q
    || |||| ||||||||| | ||||||||| |||||||||||    
T  35898468 agtttgacagatttgaattcttgaggaaggaacttggtgtt 35898508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 18641345 - 18641159
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||| || || || ||| || | || ||||  ||||| ||| |||| ||  |||    
T  18641345 agattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtga 18641246  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgttgttaacatgcagtagttatgaattaagggggagtattagaatgttaat 211  Q
    ||||||| | ||||||| || ||||||||||| |  ||||  |||| || ||| ||||||| ||||| |||||||||| |||| |||||    
T  18641245 agcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagttatg-attaa-ggggagtattggaatattaat 18641159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 394
Target Start/End: Original strand, 1663317 - 1663408
Alignment:
Q  305 agtttgttagttagatagcttattctacaagcaagtgttat-tttgcctat-aaaggctttgtattgtgaaacttcaagtcttaatgagatt 394  Q
    ||||||||||||||||||||| | |||||| |||||||||| ||||||||| |||| |||||||  ||| |  ||||| |||||||||||||    
T  1663317 agtttgttagttagatagcttgtgctacaaacaagtgttatatttgcctatgaaagtctttgtaaggtgtacattcaattcttaatgagatt 1663408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 50778501 - 50778361
Alignment:
Q  23 agattctatttcattagggagcaagtgactaatggagtgattgagttgcattattgtcctacataattgcagcttgtagatggttttgcaaaagctttga 122  Q
    |||||| |||||||||| ||||| ||||||||| || |||||||| |||| ||||| || ||| || |||| ||||  ||||| ||| |||| ||  | |    
T  50778501 agattccatttcattagagagcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatggctttacaaaggcagtaa 50778402  T
Q  123 agcttgatagatttgaacttttgaggaagaaacttggtgtt 163  Q
    ||||||| ||||||||| |||| |||||| |||||||||||    
T  50778401 agcttgacagatttgaattttttaggaaggaacttggtgtt 50778361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 395
Target Start/End: Original strand, 51119482 - 51119574
Alignment:
Q  305 agtttgttagttagatagcttattctacaagcaagtgttat-tttgcctat-aaaggctttgtattgtgaaacttcaagtcttaatgagatta 395  Q
    |||| |||||||||||||||| | ||||||| ||||||||| ||||| ||| |||||||||||| |||| |  || || ||||||||||||||    
T  51119482 agttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtgtacatttaattcttaatgagatta 51119574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University