View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7219_low_4 (Length: 492)

Name: NF7219_low_4
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7219_low_4
NF7219_low_4
[»] scaffold0001 (2 HSPs)
scaffold0001 (1-492)||(92975-93466)
scaffold0001 (3-492)||(124562-125053)
[»] scaffold0656 (1 HSPs)
scaffold0656 (1-492)||(6955-7457)
[»] chr2 (7 HSPs)
chr2 (3-492)||(24915597-24916097)
chr2 (45-492)||(23198674-23199132)
chr2 (45-492)||(22640220-22640678)
chr2 (68-492)||(23624102-23624537)
chr2 (41-485)||(23811816-23812273)
chr2 (185-388)||(25114117-25114320)
chr2 (424-485)||(25114356-25114417)
[»] scaffold0107 (1 HSPs)
scaffold0107 (7-492)||(6049-6545)
[»] chr1 (4 HSPs)
chr1 (5-492)||(21295864-21296362)
chr1 (3-492)||(22802570-22803070)
chr1 (1-492)||(22692010-22692501)
chr1 (54-492)||(41378228-41378677)
[»] scaffold0026 (1 HSPs)
scaffold0026 (3-492)||(136833-137333)
[»] chr6 (8 HSPs)
chr6 (3-492)||(16212153-16212653)
chr6 (45-492)||(19033000-19033458)
chr6 (259-366)||(13779244-13779351)
chr6 (286-380)||(20191036-20191130)
chr6 (286-380)||(22144861-22144955)
chr6 (421-492)||(16164100-16164171)
chr6 (301-366)||(17806786-17806851)
chr6 (424-485)||(17806909-17806970)
[»] chr8 (4 HSPs)
chr8 (62-492)||(22069665-22070107)
chr8 (3-492)||(22341361-22341861)
chr8 (3-492)||(22346544-22347044)
chr8 (6-66)||(22172837-22172897)
[»] chr5 (3 HSPs)
chr5 (3-492)||(21512905-21513405)
chr5 (259-387)||(26864544-26864672)
chr5 (185-388)||(22850199-22850402)
[»] scaffold0241 (1 HSPs)
scaffold0241 (3-492)||(13369-13869)
[»] scaffold0046 (2 HSPs)
scaffold0046 (5-442)||(55920-56360)
scaffold0046 (438-492)||(35407-35461)
[»] scaffold0053 (2 HSPs)
scaffold0053 (80-492)||(40123-40546)
scaffold0053 (5-58)||(40068-40121)
[»] chr3 (7 HSPs)
chr3 (45-492)||(13304733-13305191)
chr3 (54-492)||(10784072-10784521)
chr3 (45-492)||(10154898-10155356)
chr3 (54-492)||(14691272-14691721)
chr3 (54-492)||(7363275-7363723)
chr3 (301-366)||(14140603-14140668)
chr3 (286-366)||(268472-268552)
[»] chr4 (5 HSPs)
chr4 (4-397)||(14744757-14745161)
chr4 (45-492)||(15151727-15152185)
chr4 (45-492)||(13287197-13287646)
chr4 (41-482)||(18560379-18560830)
chr4 (393-492)||(14748104-14748203)
[»] scaffold0051 (1 HSPs)
scaffold0051 (45-492)||(71341-71799)
[»] scaffold0304 (1 HSPs)
scaffold0304 (45-492)||(20856-21314)
[»] scaffold0022 (1 HSPs)
scaffold0022 (68-492)||(12930-13365)
[»] chr7 (6 HSPs)
chr7 (54-492)||(14340486-14340935)
chr7 (45-492)||(18169453-18169911)
chr7 (334-492)||(13276022-13276180)
chr7 (428-486)||(16033523-16033581)
chr7 (309-363)||(18457830-18457884)
chr7 (122-181)||(18458024-18458083)
[»] scaffold0040 (1 HSPs)
scaffold0040 (68-485)||(32888-33316)
[»] scaffold0064 (1 HSPs)
scaffold0064 (55-492)||(35487-35936)
[»] scaffold0100 (1 HSPs)
scaffold0100 (54-485)||(902-1344)
[»] scaffold0013 (4 HSPs)
scaffold0013 (5-315)||(150940-151261)
scaffold0013 (271-485)||(85096-85310)
scaffold0013 (335-485)||(77289-77439)
scaffold0013 (385-485)||(150828-150928)
[»] scaffold0023 (4 HSPs)
scaffold0023 (185-318)||(66293-66426)
scaffold0023 (185-318)||(75471-75604)
scaffold0023 (5-156)||(66422-66573)
scaffold0023 (5-156)||(75600-75751)
[»] scaffold0757 (2 HSPs)
scaffold0757 (283-380)||(2879-2976)
scaffold0757 (122-181)||(3088-3147)
[»] scaffold0401 (1 HSPs)
scaffold0401 (260-363)||(5810-5913)
[»] scaffold0016 (1 HSPs)
scaffold0016 (370-485)||(177471-177586)


Alignment Details
Target: scaffold0001 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 93466 - 92975
Alignment:
Q  1 atgctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtg 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93466 atgctgctatgtacaatttcattcttttgtccttcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtg 93367  T
Q  101 ctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatatgaaagttgatttttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93366 ctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatatgaaagttgatttttcc 93267  T
Q  201 taacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  93266 taacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctgtttgatttcgattccctttttatgcaccacg 93167  T
Q  301 aaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtt 400  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  93166 aaacctaaaaaatcacctgcacaaaccccgaatgcacattttaatggattcattttcaatccatattgcttcatcctttcaaaagatcggcgtaaatgtt 93067  T
Q  401 tcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
     ||||||| |||||||  |||||||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||||||||||||||    
T  93066 ccaaatgtttttcctctaaagaagattttaccacaatatcatcaatataaatttgcataaaatcttatatgaaatcatgaaacattaaattc 92975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 492
Target Start/End: Original strand, 124562 - 125053
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| ||||||||||||||  | ||  |||| || || |||||||  |||||||||| |||||||||||||||||||||||| || ||||||||||    
T  124562 gctgctatatacaatttcattctcctatctttcaacaaaggggaaagaaccggaggatttaccagatatgacttgatttcatcgaaagctttttggtgct 124661  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatatgaa-----------agtt 191  Q
    | |  |||||||| |||||||| |||||||| | ||| |||| ||| |||||||||||||| || ||||| ||||||||||||||           ||||    
T  124662 caggttcccatttgaaaatatcgtctttcttcagtcgaagtaatggtgagaaagcttgtgtcttcccactcagatttgatatgaacctccggagaaagtt 124761  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    ||||||||| |  ||||| ||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||     
T  124762 gatttttcccagtaatgactgcaactctttcttcatagaaggagctttggtctcaattattgccttggttttgttctggttgatttcgattccttttttg 124861  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    ||||| ||||||||||  |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |    
T  124862 tgcactacgaaacctaagaaatcaccggcacaaactccaaatgcacattttaaaggattcattttcaatccatatcgcctcatcctttcaaatgattgac 124961  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    || |||||| |||||||||||| ||||||||||||||||||         |||||||||| || ||||||||  |||||||| ||||| |||||||||||    
T  124962 gtgaatgttccaaatgtctttcttccgaagaagattttacc---------tcaatgtaaactttcataaaatcttctatgaagtcatggaacattaaatt 125052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0656 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: scaffold0656
Description:

Target: scaffold0656; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 7457 - 6955
Alignment:
Q  1 atgctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtg 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7457 atgctgctatgtacaatttcattcttttgtccttcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggctttttggtg 7358  T
Q  101 ctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaag 189  Q
     |||| ||||||||| |||| ||| |||||||||| | |||||| |||||||||||||||||| ||||||||||||||||||||           |||||    
T  7357 ttccggctcccatttgaaaacatcctctttctttagttggagtaatggcgagaaagcttgtgtcttgccacttagatttgatataaacctcctgagaaag 7258  T
Q  190 ttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttt 289  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7257 ttgatttttcctaatagtgactgcaactctttcttcgtagaaggagctttggtctcgattattgccttggttttgttctggttgatttcgattccctttt 7158  T
Q  290 tatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcg 389  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7157 tatgcaccacgaaacctagaaaatcacctgcacaaaccccgaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaaagatcg 7058  T
Q  390 gcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaa 489  Q
     |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7057 acgtaaatgttccaaatgtctttcttctgaagaagattttaccacaatatcatcaatgtaaatttgcataaaatcctctatgaaatcatgaaacattaaa 6958  T
Q  490 ttc 492  Q
    |||    
T  6957 ttc 6955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 3 - 492
Target Start/End: Complemental strand, 24916097 - 24915597
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |    
T  24916097 gctgctatgtacaatttcattcttctgtccttcaataaaggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaagctttttggtgtt 24915998  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
     || ||||||||| |||| ||| |||||||||| ||| |||| ||||||||||| |||||| ||| ||||||||||||||||           |||||||    
T  24915997 tcgactcccatttgaaaacatcatctttctttagtcgaagtaatggcgagaaagtttgtgtcttgacacttagatttgatataaacctcctgagaaagtt 24915898  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24915897 gatttttcctaatagtgactgcaactctttcttcgtagaaggagctttggtctcgattattgccttggttttgttctggttgatttcgattcccttttta 24915798  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24915797 tgcactacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaatgatcggc 24915698  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24915697 gtaaatgttccaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaatcctctatgaaatcatgaaacattaaatt 24915598  T
Q  492 c 492  Q
    |    
T  24915597 c 24915597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 45 - 492
Target Start/End: Original strand, 23198674 - 23199132
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  ||||| |||| || ||||||||||||||||||||| || ||||||||||| |  |||||||| |||| ||| |||||||||| ||||||||    
T  23198674 gaaagaaccggagggtttaccaaatatgacttgatttcatcgaaagctttttggtgctctggttcccatttgaaaacatcatctttctttagtcggagta 23198773  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||||||||||| |||| |||||| ||||||||           |||||||||| |||||||  |  || || ||||||||||| ||||||||    
T  23198774 gtggtgagaaagcttgtgtcttgctacttaggtttgatataaaccttcggagaaagttgatctttcctagtagagactgtaactctttctttgtagaagg 23198873  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    ||| |  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  23198874 agccttggtctcaattattgccttggttttgttctggttgatctcgattccctttttatgcacgacgaaccctaagaaatcacctgcacaaaccccaaat 23198973  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||| ||| ||||| || |||||||||||||| || |    
T  23198974 gcacactttaaaggattcattttcaatccatattgcctcatcctttcgaatgatcggcgtaaatgttccaagtgtctctcttccgaagaagatttcacta 23199073  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||| ||||| |||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  23199074 caatgtcatctatgtaaacctgcataaaattctctatgaagtcatggaacattaaattc 23199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 45 - 492
Target Start/End: Complemental strand, 22640678 - 22640220
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  ||||| |||| || ||||||||||||||||||||| || ||||||||||| |  |||||||| |||| ||| |||||||||| ||||||||    
T  22640678 gaaagaaccggagggtttaccaaatatgacttgatttcatcgaaagctttttggtgctctggttcccatttgaaaacatcatctttctttagtcggagta 22640579  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||||||||||| ||||||||||| ||||||||           |||||||||| |||||||  |  || || ||||||||||| ||||||||    
T  22640578 gtggtgagaaagcttgtgtcttgccacttaggtttgatataaaccttcggagaaagttgatctttcctagtagagactgtaactctttctttgtagaagg 22640479  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    ||| |  ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||  ||||||||||||||||||| ||||    
T  22640478 agccttggtctcaatttttgccttggttttgttctggttgatctcgattccctttttatgcacgacgaaccctaagaaatcacctgcacaaaccctaaat 22640379  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||| ||| ||||| || | |||||||||||| || |    
T  22640378 gcacactttaaaggattcattttcaatccatattgcctcatcctttcgaatgatcggcgtaaatgttccaagtgtctctctttcgaagaagatttcacta 22640279  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||| ||||| |||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  22640278 caatgtcatctatgtaaacctgcataaaattctctatgaagtcatggaacattaaattc 22640220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 68 - 492
Target Start/End: Original strand, 23624102 - 23624537
Alignment:
Q  68 atatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttg 167  Q
    ||||||||||||||||||||| || ||||||||||| |  |||||||| |||| ||| |||||||||| |||||||||||| |||||||||||||| |||    
T  23624102 atatgacttgatttcatcgaaagctttttggtgctctggttcccatttgaaaacatcatctttctttagtcggagtagtggtgagaaagcttgtgtcttg 23624201  T
Q  168 ccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgcct 256  Q
    |||||||| ||||||||           |||||||||| |||||||  |  || || ||||||||||| ||||||||||| |  ||||||||||||||||    
T  23624202 ccacttaggtttgatataaaccttcggagaaagttgatctttcctagtagagactgtaactctttctttgtagaaggagccttggtctcaattattgcct 23624301  T
Q  257 tggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcatttt 356  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||| | ||||  ||||||||||||||||||||||||||||||||| | |||||||||||    
T  23624302 tggttttgttctgcttgatctcgattccctttttatgcacgacggaccctaagaaatcacctgcacaaaccccaaatgcacatttttaaggattcatttt 23624401  T
Q  357 caatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgc 456  Q
    |||||||||| | ||||||||||| || |||||||||||||||| ||| ||||| || || ||||||||||| || ||||| ||||| |||||||  |||    
T  23624402 caatccatattgtctcatcctttcgaatgatcggcgtaaatgttccaagtgtctctcttctgaagaagatttcactacaatgtcatctatgtaaacctgc 23624501  T
Q  457 ataaaattctctatgaaatcatgaaacattaaattc 492  Q
    ||||||||||||||||| ||||| ||||||||||||    
T  23624502 ataaaattctctatgaattcatgtaacattaaattc 23624537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 41 - 485
Target Start/End: Original strand, 23811816 - 23812273
Alignment:
Q  41 tggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcgg 140  Q
    ||||||||| || ||| |||| |||| |||||| |||||||| || || ||||||||||| || |  |||  ||| || | |||||||||||| |  ||     
T  23811816 tggtgaaagtataggatgattaatcaaatatgatttgatttcttcaaaagccttttggtgttctggttccagtttgaacacatcttctttcttcagacga 23811915  T
Q  141 agtagtggcgagaaagcttgtgttttgccacttagatttgatat-------------gaaagttgatttttcctaacaatgattgcaactctttcttcgt 227  Q
    |||| |||||| ||||||||||||||||||||||| || |||||             |||||||||||||||||||||| || |||||||||||||| ||    
T  23811916 agtaatggcgataaagcttgtgttttgccacttaggttcgatataaacaccttctgagaaagttgatttttcctaacaaagactgcaactctttctttgt 23812015  T
Q  228 agaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaacc 327  Q
     ||||| ||||||||||| |||||||||||||||||||| || || || || ||||| || || || || || ||||||| ||||||||||||| ||||     
T  23812016 cgaaggggcttgagtctccattattgccttggttttgttttgattaatctcaattcctttcttgtggacgacaaaacctaaaaaatcacctgcagaaaca 23812115  T
Q  328 ccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagatt 427  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||| ||||| || |  || ||| | || || ||||| ||||    
T  23812116 ccaattgcacattttaatggattcatttttaatccatattgcctcatcctttcgaatgatcgtcgtaagtgatctaagtgtttatcttctgaagatgatt 23812215  T
Q  428 ttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacat 485  Q
    ||||||| |||||||| ||||| | |||||| |||| ||||||||| |||||||||||    
T  23812216 ttaccacgatatcatcgatgtagacttgcatgaaatcctctatgaagtcatgaaacat 23812273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 388
Target Start/End: Original strand, 25114117 - 25114320
Alignment:
Q  185 gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcc 284  Q
    |||||||||||||||| ||||| ||||| | |||||| || || |||||   ||  ||||| |  |||||||| |||||||| || || ||||| ||       
T  25114117 gaaagttgatttttcccaacaaagattgaagctctttttttgtcgaaggcagttttgtctccaaaattgcctttgttttgttttgattaatttcaatgtt 25114216  T
Q  285 ctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaac 384  Q
     ||||||||||| || |||||||  || ||  ||||||  || ||||| |||||||||| |||||||||||||||||| |||   ||||| ||||| |||    
T  25114217 gtttttatgcacaacaaaacctaagaagtcgtctgcacgcacaccaaaagcacattttactggattcattttcaatccttattttctcattctttcgaac 25114316  T
Q  385 gatc 388  Q
    ||||    
T  25114317 gatc 25114320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 25114356 - 25114417
Alignment:
Q  424 gattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacat 485  Q
    ||||| || ||||| ||||| ||||||||||||||||| ||| |||| ||||||||||||||    
T  25114356 gatttaacaacaatgtcatctatgtaaatttgcataaatttccctataaaatcatgaaacat 25114417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 6545 - 6049
Alignment:
Q  7 ctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgt 106  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||      
T  6545 ctatgtacaatttcattcttttgtccttcaataatggtgagagaattggaggatttatcagatatgacttgatttcctcgaatgccttttggtgttcctg 6446  T
Q  107 ctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatt 195  Q
    ||||||||| |||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||           |||||||||||    
T  6445 ctcccatttgaaaacatcctctttctttaatcggagtaatggcgagaaagcttgtgtcttgccacttagatttgatataaacctcctgagaaagttgatt 6346  T
Q  196 tttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgca 295  Q
    |||||||| | ||| ||||||||||||||||||||||||||||  ||||   |||||||||||||||||||||||||||| ||||||||||||||||| |    
T  6345 tttcctaatagtgactgcaactctttcttcgtagaaggagctttggtcttggttattgccttggttttgttctggttgatctcgattccctttttatgaa 6246  T
Q  296 ccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaa 395  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  6245 ctacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatattgcctcatcctttcaaaagatcggcgtaa 6146  T
Q  396 atgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    ||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  6145 atgttccaaatgtctttcttctgaagaagattttaccacaatatcatcaatgtaaatttgcataaagtcctctatgaaatcatgaaacattaaattc 6049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 492
Target Start/End: Complemental strand, 21296362 - 21295864
Alignment:
Q  5 tgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctcc 104  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||     
T  21296362 tgctatgtacaatttcatccttttgcccttcaacaatggtgaaagtattggcggatttatcaaatatgactagatttcatcgaaggccttttggtgctct 21296263  T
Q  105 gtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttga 193  Q
    | ||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||           ||||||| |    
T  21296262 ggctcccatttaaaaatatcttctttcttcaatcggagtaatggcgagaatgcttgtgtcttgccacttagattcgatataaacctcctgagaaagttta 21296163  T
Q  194 tttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatg 293  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  21296162 tttttcctaataatgactgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttattctggttgatttcgattccttttttatg 21296063  T
Q  294 caccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgt 393  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  21296062 aaccacgaaacctaaaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcagtccatattgcctcatcctttcaaaagatcggcgt 21295963  T
Q  394 aaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    ||||||  ||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||   |||| |||||||||||||||| |||||    
T  21295962 aaatgtcccaagtgtttttcctctgaagaagattttaccacaatatcatcaatataaatttgcataaaagcttctacgaaatcatgaaacattgaattc 21295864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 3 - 492
Target Start/End: Original strand, 22802570 - 22803070
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| ||||||||||||||  | ||  ||||||| || |||||||  |||||||| | |||||||||||||||||||||||| || ||||||||||    
T  22802570 gctgctatatacaatttcattctcatatctttcaataaaggagaaagaaccggaggattcaccagatatgacttgatttcatcgaaagctttttggtgct 22802669  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
    | | ||||||||| |||| ||| |||||||||| |||||||| ||| |||||||||||||| || ||||||| |||||||||           |||||||    
T  22802670 ctggctcccatttgaaaacatcatctttctttagtcggagtaatggtgagaaagcttgtgtcttaccacttaaatttgatataaacctccggagaaagtt 22802769  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    ||||||||| || ||||| |||||||||||||| |||||||||||||  ||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  22802770 gatttttcccaataatgactgcaactctttctttgtagaaggagctttggtctcgattattgccttggttttgttctagttgattttgattcccttttta 22802869  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  22802870 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacactttaatggattcattttcaacccatatcgcctcatcctttcaaatgatcggc 22802969  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  22802970 gtaaatgatccaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaacttgcataaaatcctctatgaaatcatggaacattaaatt 22803069  T
Q  492 c 492  Q
    |    
T  22803070 c 22803070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 22692010 - 22692501
Alignment:
Q  1 atgctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtg 100  Q
    |||| |||||||||||||||||||||||| || ||||||| ||||| || |||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  22692010 atgccgctatgtacaatttcattcttttgcccttcaataacggtgagagtattggaggatttatcaaatatgacttgacttcatcaaaggccttttggtg 22692109  T
Q  101 ctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgat--atgaaagttgattttt 198  Q
     || | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||  |  |||  | |||||  ||| ||     
T  22692110 ttctggctcccatttaaaaatatcttctttctttaatcggagtaatggcgagaaagcttgtgttctgcca-ttac-tccgattaaagaaagaagatattc 22692207  T
Q  199 cctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcacca 298  Q
    ||||| || || |||||||||||||||||||||||||| |||||||  ||||| || ||||||||||||| ||||||||||||||| |||||||| ||||    
T  22692208 cctaataacgactgcaactctttcttcgtagaaggagcctgagtcttgattatggctttggttttgttctagttgatttcgattccttttttatgaacca 22692307  T
Q  299 cgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatg 398  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  || ||| ||||||    
T  22692308 cgaaacctaaaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcagtccatattgcctcatcctttcaaaaaataggcataaatg 22692407  T
Q  399 tttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |  ||||||| | | ||| ||||||||||| ||||||||||||||||| |||||||||||||||   |||| ||||||||||||||||||||||    
T  22692408 tcccaaatgtttatactctgaagaagatttaaccacaatatcatcaatataaatttgcataaaaacttctaagaaatcatgaaacattaaattc 22692501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 54 - 492
Target Start/End: Original strand, 41378228 - 41378677
Alignment:
Q  54 ggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgaga 153  Q
    |||||||||| || ||| ||||||||||| |||||||| ||||||||||| |  |||||||| |||| ||| |||||||| ||||| |||||||| ||||    
T  41378228 ggaggatttaccaaataagacttgatttcgtcgaaggctttttggtgctcaggttcccatttgaaaacatcatctttcttcaatcgaagtagtggtgaga 41378327  T
Q  154 aagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagt 242  Q
    ||||||||||  |||||||||||||||||||           ||||||||||||||||||| |  || || || |||||||| ||||| ||||||| |||    
T  41378328 aagcttgtgtcctgccacttagatttgatataaatcttcggagaaagttgatttttcctaatagagactgtaattctttctttgtagagggagctttagt 41378427  T
Q  243 ctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacatttt 342  Q
    ||| |||||||| |||||||||||||||||||| | |||||| ||||| ||||| ||||| ||||  |||||||||||||||||||||||||||||||||    
T  41378428 ctcgattattgctttggttttgttctggttgatcttgattccttttttgtgcacaacgaaccctaagaaatcacctgcacaaaccccaaatgcacatttt 41378527  T
Q  343 aatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcat 442  Q
    |||||||||||||||||||||||| ||||||||||||| || ||| |||||||||| | ||| |||||||| |||||||||||||| || ||||| ||||    
T  41378528 aatggattcattttcaatccatattgcctcatcctttcgaatgattggcgtaaatgctccaagtgtctttcttccgaagaagatttcactacaatgtcat 41378627  T
Q  443 caatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    | ||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  41378628 ctatgtaaacttgcataaaattctctatgaagtcatgtaacattaaattc 41378677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 3 - 492
Target Start/End: Original strand, 136833 - 137333
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| |||||||||||||| |||||  ||||||| || |||||||| |||||||||| |||||||||||||||||||||||| ||  |||||||||    
T  136833 gctgctatatacaatttcattctcttgtctttcaataaaggagaaagaatcggaggatttaccagatatgacttgatttcatcgaaagctgtttggtgct 136932  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
    | | ||||||||| |||| ||| |||||||||| ||||||||  ||||||||||||||||| |||||||||| |||||||||           |||||||    
T  136933 ctggctcccatttgaaaacatcatctttctttagtcggagtaaaggcgagaaagcttgtgtcttgccacttaaatttgatataaaccttctgagaaagtt 137032  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    ||| |||||||| | ||| ||||||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  137033 gatctttcctaatagtgactgcaactctttcttcgtagaaggagctttggtctcgattattgccttggttttattctggttgatttcgattcccttttta 137132  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  137133 tgcaccacaaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcctcctttcaaacgatcggc 137232  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||||||||||||||    
T  137233 gtaaatgttccaaatgtctatcctccgaagaagattttaccacaatatcatcaatgtaaacctgcataaaatcttctatgaaatcatgaaacattaaatt 137332  T
Q  492 c 492  Q
    |    
T  137333 c 137333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 3 - 492
Target Start/End: Complemental strand, 16212653 - 16212153
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| ||||||||||||||  | ||  ||||||| || ||||| |  |||||||||| || ||||||||||||||||||||  || ||||||||||    
T  16212653 gctgctatatacaatttcattctcctatctttcaataaaggagaaaggaccggaggatttaccaaatatgacttgatttcatcgagagctttttggtgct 16212554  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
    | |  ||||| || |||| ||| |||||||||| |||||||| |||||||||||||||||| || |||||||| ||||||||           |||||||    
T  16212553 ctggttcccacttgaaaacatcatctttctttagtcggagtaatggcgagaaagcttgtgtcttaccacttaggtttgatataaatctccggagaaagtt 16212454  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    ||||||||| || ||||| ||||| ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16212453 gatttttcccaataatgactgcaattctttcttcgtagaaggagctttggtctcaattattgctttggttttgttctggttgatttcgattcccttttta 16212354  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16212353 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaatgatcggc 16212254  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  16212253 gtaaatgttccaaatgtctttcctccaaagaagattttaccacaatgtcatcaatgtaaatttgcataaaatcctctatgaaatcatggaacattaaatt 16212154  T
Q  492 c 492  Q
    |    
T  16212153 c 16212153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 45 - 492
Target Start/End: Original strand, 19033000 - 19033458
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  ||||| |||| || |||||||||||||||||| || || |||||||| || |    |||||| |||| ||| |||||||||| ||||||||    
T  19033000 gaaagaaccggagggtttaccaaatatgacttgatttcatcaaaagctttttggtgatctgataaccatttgaaaacatcatctttctttagtcggagta 19033099  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
     ||| |||||||||||||| || |||||||| ||||||||           |||||||||||||||| |  |  || ||||||||| |||| ||||||||    
T  19033100 atggtgagaaagcttgtgtcttaccacttaggtttgatataaacctccggagaaagttgatttttcccagtagagactgcaactctctctttgtagaagg 19033199  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  19033200 agctttggtctcgattattgccttggttttgttctggttgatttcgattccctttttatgcacgacgaaacctaagaaatcacctgcacaaaccccaaat 19033299  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||| || ||| |||||||||||| |||||||||||| |||||||||||||| || |    
T  19033300 gcacattttaaaggattcattttcaatccattttgcctcatcctttcgaatgattggcgtaaatgttccaaatgtctttcttccgaagaagatttcacta 19033399  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||| |||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||    
T  19033400 caatgtcatcaatgtaaacctgcataaaattttctatgaagtcatggaacattaaattc 19033458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 366
Target Start/End: Complemental strand, 13779351 - 13779244
Alignment:
Q  259 gttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttca 358  Q
    |||||||| || || ||||| || || ||||| ||||| ||||||||||  ||||||||||||| ||| ||||| |||||||| |||||||||||||| |    
T  13779351 gttttgttttgatttatttcaatgccttttttgtgcacaacgaaacctaagaaatcacctgcaccaacaccaaaggcacatttcaatggattcattttaa 13779252  T
Q  359 atccatat 366  Q
    ||||||||    
T  13779251 atccatat 13779244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 20191036 - 20191130
Alignment:
Q  286 tttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttc 380  Q
    ||||| ||||| || |||||||  ||||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||||   |||||||||||    
T  20191036 tttttgtgcacaacaaaacctaagaaatcacctgcacgaacaccaaaggaacatttcaatggattcattttcaatccatattttctcatcctttc 20191130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 22144955 - 22144861
Alignment:
Q  286 tttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttc 380  Q
    ||||| ||||| || |||||||  ||||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||||   |||||||||||    
T  22144955 tttttgtgcacaacaaaacctaagaaatcacctgcacgaacaccaaaggaacatttcaatggattcattttcaatccatattttctcatcctttc 22144861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 492
Target Start/End: Original strand, 16164100 - 16164171
Alignment:
Q  421 gaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    ||||||||||||| ||||||||| || |||||||||||||| || || || ||||| ||||||||| |||||    
T  16164100 gaagattttaccataatatcatccatctaaatttgcataaatttatcaataaaatcgtgaaacattgaattc 16164171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 17806786 - 17806851
Alignment:
Q  301 aaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatat 366  Q
    |||||||  |||||||||||||  || | ||| |||| ||| ||||||||||||||||||||||||    
T  17806786 aaacctaagaaatcacctgcacgcacacaaaaggcacgtttcaatggattcattttcaatccatat 17806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 17806909 - 17806970
Alignment:
Q  424 gattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacat 485  Q
    ||||| || ||||| ||||| ||||||||||||||||  ||| |||| ||||||||||||||    
T  17806909 gatttgacaacaatgtcatctatgtaaatttgcataactttccctataaaatcatgaaacat 17806970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 62 - 492
Target Start/End: Complemental strand, 22070107 - 22069665
Alignment:
Q  62 tatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgt 161  Q
    ||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  22070107 tatcaaatatgacttgatttcatcaaaggccttttggtgctctggctcccatttaaaagtatcttctttcttcaatcggagtactggcgagaaagcttgt 22070008  T
Q  162 gttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaatta 250  Q
    || |||||||||||||| |||||           ||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||    
T  22070007 gtcttgccacttagattcgatataaatctcctaagaaagttgatttttcctaataacgactgtaactctttcttcgtagaaggagcttgagtctcaatta 22069908  T
Q  251 ttgccttggttttgttctggttgatttcgattcccttttt-atgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggat 349  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  22069907 ttgccttggttttgttctggttgatttcgattcctttttttatgaaccacgaaacctaaaaaatcacctgtacaaaccccaaatgcacattttaatggat 22069808  T
Q  350 tcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgta 449  Q
    ||||||||| || |||| ||||||||||| |||| |||||||||||||||  ||| ||| | ||||| ||||||||||||||||||||||||||||| ||    
T  22069807 tcattttcagtctatattgcctcatccttccaaaagatcggcgtaaatgtcccaagtgtttctcctctgaagaagattttaccacaatatcatcaatata 22069708  T
Q  450 aatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  22069707 aatttgcataaaatcttctatgaaatcatgaaacattaaattc 22069665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 492
Target Start/End: Original strand, 22341361 - 22341861
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| ||||||||||||||  | ||  |||||||  | ||||||| |||||| |||| ||||||||||||||||||||| || || ||||||||||    
T  22341361 gctgctatatacaatttcattctcctatctttcaataaatgggaaagaactggagggtttaccagatatgacttgatttcatcaaaagctttttggtgct 22341460  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
    | |  ||||| || |||| ||| |||||||||| |||||||| ||| |||||||||||||| || ||||| |||||||||||           |||||||    
T  22341461 ctggttcccacttgaaaacatcatctttctttagtcggagtaatggtgagaaagcttgtgtcttaccactcagatttgatataaacctccggagaaagtt 22341560  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    ||||||| | |  ||||| || |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22341561 gattttttccagtaatgactgtaactctttcttcgtagaaggagctttggtcttaattattgccttggttttgttctggttgatttcgattcccttttta 22341660  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||    
T  22341661 tgcactacgaaacctaaaaaatcacctgcacaaaccccaaatgcacattttaaaggattcattttcaatccatatcgcctcatcctttcaaatgattggc 22341760  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||| |||||| ||||    
T  22341761 gtaaatgttccaaatgtctttcctccgaagaagattttaccacaatgtcatcaatgtaaatttgcataaaaacctctatgaagtcatggaacattgaatt 22341860  T
Q  492 c 492  Q
    |    
T  22341861 c 22341861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 492
Target Start/End: Original strand, 22346544 - 22347044
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| ||||||||||||||  | ||  |||||||  | ||||||| |||||| |||| ||||||||||||||||||||| || || ||||||||||    
T  22346544 gctgctatatacaatttcattctcctatctttcaataaatgggaaagaactggagggtttaccagatatgacttgatttcatcaaaagctttttggtgct 22346643  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
    | |  ||||| || |||| ||| |||||||||| |||||||| ||| |||||||||||||| || ||||| |||||||||||           |||||||    
T  22346644 ctggttcccacttgaaaacatcatctttctttagtcggagtaatggtgagaaagcttgtgtcttaccactcagatttgatataaacctccggagaaagtt 22346743  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    ||||||| | |  ||||| || |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22346744 gattttttccagtaatgactgtaactctttcttcgtagaaggagctttggtcttaattattgccttggttttgttctggttgatttcgattcccttttta 22346843  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||    
T  22346844 tgcactacgaaacctaaaaaatcacctgcacaaaccccaaatgcacattttaaaggattcattttcaatccatatcgcctcatcctttcaaatgattggc 22346943  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| ||||| |||||| ||||    
T  22346944 gtaaatgttccaaatgtctttcctccgaagaagattttaccacaatgtcatcaatgtaaatttgcataaaaacctctatgaagtcatggaacattgaatt 22347043  T
Q  492 c 492  Q
    |    
T  22347044 c 22347044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 22172897 - 22172837
Alignment:
Q  6 gctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatca 66  Q
    |||||||||||||||||||||||| || |||| ||||||||||| |||||||| |||||||    
T  22172897 gctatgtacaatttcattcttttgcccttcaacaatggtgaaagtattggagggtttatca 22172837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 492
Target Start/End: Complemental strand, 21513405 - 21512905
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| | ||||||||||||  | ||  |||| || || |||||||  |||||||||| |||||||||||||||||||||||| || ||||| || |    
T  21513405 gctgctatatgcaatttcattctcctatctttcaacaaaggggaaagaaccggaggatttaccagatatgacttgatttcatcgaaagctttttgttgtt 21513306  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
    | || |||||||| |||| ||| |||||||||| |||||||| ||| |||||||||||||| || |||||||||||||||||           |||||||    
T  21513305 ctgtttcccatttgaaaacatcatctttctttagtcggagtaatggtgagaaagcttgtgtcttaccacttagatttgatataaacctccggagaaagtt 21513206  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
     |||||||| |  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21513205 aatttttcccagtaatgattgcaactctttcttcgtagaaggagctttggtctcaattattgccttggttttgttctcgttgatttcgattcccttttta 21513106  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    ||||| ||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||    
T  21513105 tgcactacgaaacctaagaaatcacctacacaaaccccaaatgcacattttaaaggattcattttcaatccatatcgcctcatcctttcaaaggattggc 21513006  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||| |||||||||||    
T  21513005 gtaaatgttccaaatgtctttcttccgaagaagattttaccacaatgtcatcaatgtaaacttgcataaaattttctatgaagtcatggaacattaaatt 21512906  T
Q  492 c 492  Q
    |    
T  21512905 c 21512905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 387
Target Start/End: Original strand, 26864544 - 26864672
Alignment:
Q  259 gttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttca 358  Q
    ||||||||||| || || || || || |||||||| || |  |||||||  |||||||||||||  || ||||||||| |||||||||||||||||||||    
T  26864544 gttttgttctgattaatctcaatgccttttttatgaacaataaaacctaagaaatcacctgcacgtacaccaaatgcaaattttaatggattcattttca 26864643  T
Q  359 atccatatcgcctcatcctttcaaacgat 387  Q
    ||||||||   || || ||||||||||||    
T  26864644 atccatattttctaattctttcaaacgat 26864672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 388
Target Start/End: Original strand, 22850199 - 22850402
Alignment:
Q  185 gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcc 284  Q
    ||||||| |||||||| ||||| ||||| | |||||| || || ||||| | ||  ||||| |  ||| |||| |||||||| || || ||||| || ||    
T  22850199 gaaagttaatttttcccaacaaagattgaagctctttatttgtcgaaggcggttttgtctccaaaatttcctttgttttgttttgattaatttcaatgcc 22850298  T
Q  285 ctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaac 384  Q
     ||||| ||||| || |||||||  || || | |||||  || ||||| |||||||| ||||||||||||||||||||||||   ||||| ||||| |||    
T  22850299 ttttttgtgcacaacaaaacctaagaagtcgcatgcacgcacaccaaaagcacatttcaatggattcattttcaatccatattttctcattctttcgaac 22850398  T
Q  385 gatc 388  Q
    ||||    
T  22850399 gatc 22850402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 492
Target Start/End: Complemental strand, 13869 - 13369
Alignment:
Q  3 gctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgct 102  Q
    |||||||| |||||| |||||||  | ||  ||||||| || ||||||| |||||| |||| ||||||||||||||||||||| || || ||||||||||    
T  13869 gctgctatatacaatctcattctcctatctttcaataaaggggaaagaactggagggtttaccagatatgacttgatttcatcaaaagctttttggtgct 13770  T
Q  103 ccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagtt 191  Q
    | |  |||||||| |||| ||| |||||||||  |||||||| ||| |||||||||||||| || ||||| | |||||||||           |||||||    
T  13769 ctggttcccatttgaaaacatcatctttctttggtcggagtaatggtgagaaagcttgtgtctttccactcaaatttgatataaacctccgtagaaagtt 13670  T
Q  192 gatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcccttttta 291  Q
    ||||||||| |  ||||| ||||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13669 gatttttcccagtaatgactgcaattctttcttcgtagaaggaactttggtctcaattattgccttggttttgttctggttgatttcgattcccttttta 13570  T
Q  292 tgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggc 391  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |    
T  13569 tgcactacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaaaggattcattttcaatccatatcgcctcatcctttcaaatgatcgac 13470  T
Q  392 gtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaatt 491  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| ||||| || |||| ||||||||||| ||||||||| ||||| |||||| ||||    
T  13469 gtaaatgttccaaatgtttttcctccgaagaagattttaccacaatgtcatcgatataaacttgcataaaatcctctatgaagtcatggaacattgaatt 13370  T
Q  492 c 492  Q
    |    
T  13369 c 13369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 442
Target Start/End: Complemental strand, 56360 - 55920
Alignment:
Q  5 tgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctcc 104  Q
    |||||| ||||||||||||||| || || |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  56360 tgctatatacaatttcattcttctgcccttcaataatggtgaaagtattggaggatttatcaaatataacttgatttcatcgaaggccttttggtgctcc 56261  T
Q  105 gtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttga 193  Q
    | |         || |||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||| |||||           |||||||||    
T  56260 ggcc--------aatatatcttctttctttaatcgtagtaatggcgagaaagcttgtgtcatgccacttagattcgatataaacctcctgagaaagttga 56169  T
Q  194 tttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatg 293  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  56168 tttttcctaacaatgactgcaactctttcttcgtagaaggagcttgagtgtcaattattgccttggttttgttctggttgatttcgattccttttttatg 56069  T
Q  294 caccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgt 393  Q
    |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||    
T  56068 caccacgaaacctaaaatatcacctgcacaaaccccgaatgcacattttaatggattcattttcaatccatattgtctcatcctttcaaaagattggcgt 55969  T
Q  394 aaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcat 442  Q
    |||| |  ||| ||| ||||||  |||||||||||||||||||||||||    
T  55968 aaatatcccaagtgtttttcctttgaagaagattttaccacaatatcat 55920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 438 - 492
Target Start/End: Complemental strand, 35461 - 35407
Alignment:
Q  438 atcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||||||||||||||    
T  35461 atcatcaatataaattttcataaaatcttctatgaaatcatgaaacattaaattc 35407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 80 - 492
Target Start/End: Original strand, 40123 - 40546
Alignment:
Q  80 ttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagattt 179  Q
    |||||| |||||||||||||| || | |||||||||||||| |||||||||||| || |||| || |||||||||||||||||| ||||||||||||||     
T  40123 ttcatcaaaggccttttggtgttctggctcccatttaaaaacatcttctttcttcaagcggactaatggcgagaaagcttgtgtcttgccacttagattc 40222  T
Q  180 gatatgaa-----------agttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttct 268  Q
    ||||||||           |||||||||||||||  || || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40223 gatatgaatctcctaagaaagttgatttttcctagtaacgactgcaactctttctttgtagaaggagcttgagtctcaattattgccttggttttgttct 40322  T
Q  269 ggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcg 368  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||  ||||||||| |||||||||||||||||||||||||| |||||||||||| |    
T  40323 ggttgatttcgattccctttttatggaccacgaaacctaaaaaatcatatgcacaaacaccaaatgcacattttaatggattcatcttcaatccatattg 40422  T
Q  369 cctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctct 468  Q
    ||||||||||||||| |||||||||||||| |  |||| | | ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||  |||    
T  40423 cctcatcctttcaaaagatcggcgtaaatgctctaaatttttctcctctgaagaggattttaccacaatatcatcaatataaatttgcataaaatcttct 40522  T
Q  469 atgaaatcatgaaacattaaattc 492  Q
    ||||||||||||||||||| ||||    
T  40523 atgaaatcatgaaacattagattc 40546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 40068 - 40121
Alignment:
Q  5 tgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggagg 58  Q
    ||||||||||||||||||||||||  || |||| ||||||||||| ||||||||    
T  40068 tgctatgtacaatttcattcttttccccttcaacaatggtgaaagtattggagg 40121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 45 - 492
Target Start/End: Original strand, 13304733 - 13305191
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  |||||||||| || ||||||||||||||||||||| || ||||||||||| |  |||||||| || | ||| |||||||||||||||||||    
T  13304733 gaaagaaccggaggatttaccaaatatgacttgatttcatcgaaagctttttggtgctcggattcccatttgaagacatcatctttctttaatcggagta 13304832  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||||||||||| ||||||||||| ||||||||           ||||||||||||||||||| |  || || || |||||||| ||||||||    
T  13304833 gtggtgagaaagcttgtgtcttgccacttaggtttgatataaaccttcggagaaagttgatttttcctaatagagactgtaattctttctttgtagaagg 13304932  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    ||| |  ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||  ||||||||||||||||||||||||    
T  13304933 agccttggtctcaattattgccttggttttgttctggttgatctcgattccttttttgtgcacaacgaaccctaagaaatcacctgcacaaaccccaaat 13305032  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||| ||| ||||| || |||||||||||||| || |    
T  13305033 gcacattttaaaggattcattttcaatccatattgcctcatcctttcgaatgatcggcgtaaatgttccaagtgtctctcttccgaagaagatttcacta 13305132  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||| ||||| |||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  13305133 caatgtcatctatgtaaacctgcataaaattctctatgaagtcatggaacattaaattc 13305191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 54 - 492
Target Start/End: Complemental strand, 10784521 - 10784072
Alignment:
Q  54 ggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgaga 153  Q
    |||||||| | || ||| |||||||||||||||||||| ||||||||||| |  |||||||| |||| ||| |||||||| ||||| |||||||| ||||    
T  10784521 ggaggattcaccaaataagacttgatttcatcgaaggctttttggtgctcaggttcccatttgaaaacatcatctttcttcaatcgaagtagtggtgaga 10784422  T
Q  154 aagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagt 242  Q
    ||||||||||  |||||||||||||||||||           |||||||||||||||| || |  || || || |||||||||||||| ||||||| |||    
T  10784421 aagcttgtgtcctgccacttagatttgatataaatcttcggagaaagttgatttttcccaatagagactgtaattctttcttcgtagagggagctttagt 10784322  T
Q  243 ctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacatttt 342  Q
    ||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||| ||||||||||||||||||||||||||| ||||||    
T  10784321 ctcgattattgctttggttttgttctggttgatctcgattccttttttgtgcacaacgaaccctaaaaaatcacctgcacaaaccccaaatgcgcatttt 10784222  T
Q  343 aatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcat 442  Q
    |||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||| ||| |||||||| |||||||||||||| || ||||| ||||    
T  10784221 aatggattcattttcaatccatattgcctcatcctttcgaatgattggcgtaaatgttccaagtgtctttcttccgaagaagatttcactacaatgtcat 10784122  T
Q  443 caatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    | ||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  10784121 ctatgtagacttgcataaaattctctatgaaatcatggaacattaaattc 10784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 45 - 492
Target Start/End: Complemental strand, 10155356 - 10154898
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  ||||| |||| || ||||||||||||||||||||| || ||||||||||| |  |||||||| |||| ||| |||||||||| ||||||||    
T  10155356 gaaagaaccggagggtttaccaaatatgacttgatttcatcgaaagctttttggtgctctggttcccatttgaaaacatcatctttctttagtcggagta 10155257  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
     ||| |||||||||||||| || |||||||| ||||||||           |||||||||| || ||||  |  || |||||||||||||| ||||||||    
T  10155256 atggtgagaaagcttgtgtcttaccacttaggtttgatataaacctccggagaaagttgatcttccctagtagagactgcaactctttcttggtagaagg 10155157  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    ||| |  ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||| ||||  ||||||||||||||||||||||||    
T  10155156 agccttggtctcgattaatgctttggttttgttctggttgatttcgattccctttttatgcaagacgaaccctaagaaatcacctgcacaaaccccaaat 10155057  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||| || ||| |||||||||||| |||||||||||| |||||||||||||| || |    
T  10155056 gcacattttaaaggattcattttcaatccatattgcctcattctttcgaatgattggcgtaaatgttccaaatgtctttcttccgaagaagatttcacta 10154957  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||| ||||| |||||||  ||||||||||| |||||||||||||| ||||||||||||    
T  10154956 caatgtcatcgatgtaaacctgcataaaattttctatgaaatcatggaacattaaattc 10154898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 54 - 492
Target Start/End: Original strand, 14691272 - 14691721
Alignment:
Q  54 ggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgaga 153  Q
    |||||||||| || ||| ||||||||||||||||| || ||||||||||| |  |||||||| |||||||| |||||||| || || || ||||| ||||    
T  14691272 ggaggatttaccaaataagacttgatttcatcgaaagctttttggtgctcaggttcccatttgaaaatatcatctttcttcaaccgaagcagtggtgaga 14691371  T
Q  154 aagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagt 242  Q
    |||||||||| ||||||||||||||||||||           ||||||||||||||||||| |  || || || |||||||| ||||||||||| |  ||    
T  14691372 aagcttgtgtcttgccacttagatttgatataaatcttcggagaaagttgatttttcctaatagagactgtaattctttctttgtagaaggagccttggt 14691471  T
Q  243 ctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacatttt 342  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  14691472 ctcaattattgctttggttttgttctggttgatctcgattccttttttgtgcacaacgaaacctaagaaatcacctgcacaaaccccaaatgcacatttt 14691571  T
Q  343 aatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcat 442  Q
    |||||||||||||||||||||||| ||||||||||||| |  ||| | |||||||||| ||| ||||| || |||||||||||||| || ||||| ||||    
T  14691572 aatggattcattttcaatccatattgcctcatcctttcgattgattgtcgtaaatgttccaagtgtctctcttccgaagaagatttcactacaatgtcat 14691671  T
Q  443 caatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    | || ||||  ||||||||||| |||||||| ||||| ||||||||||||    
T  14691672 ctatataaacctgcataaaattttctatgaagtcatggaacattaaattc 14691721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 54 - 492
Target Start/End: Original strand, 7363275 - 7363723
Alignment:
Q  54 ggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgaga 153  Q
    |||||||||| || ||| ||||||||||||||||| || ||||||||||| |  |||||||| |||||||| |||||||| || || || ||||| ||||    
T  7363275 ggaggatttaccaaataagacttgatttcatcgaaagctttttggtgctcaggttcccatttgaaaatatcatctttcttcaaccgaagcagtggtgaga 7363374  T
Q  154 aagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagt 242  Q
    |||| ||||| ||||||||||||||||||||           ||||||||||||| ||||| |  || || || |||||||| ||||||||||| |  ||    
T  7363375 aagcctgtgtcttgccacttagatttgatataaatcttcggagaaagttgattttccctaatagagactgtaattctttctttgtagaaggagccttggt 7363474  T
Q  243 ctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacatttt 342  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  7363475 ctcaattattgctttggttttgttctggttgatctcgattccttttttgtgcacaacgaaacctaagaaatcacctgcacaaaccccaaatgcacatttt 7363574  T
Q  343 aatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcat 442  Q
    |||||||||||||||||||||||| ||||||| ||||| || ||| |||||||||||| ||| |||||||| ||||||||||| || || ||||| ||||    
T  7363575 aatggattcattttcaatccatattgcctcat-ctttcgaatgattggcgtaaatgttccaagtgtctttcttccgaagaagacttcactacaatgtcat 7363673  T
Q  443 caatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    | || ||||  |||||||||||||||||||| ||||| ||||| ||||||    
T  7363674 ctatataaacctgcataaaattctctatgaagtcatgtaacatcaaattc 7363723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 14140668 - 14140603
Alignment:
Q  301 aaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatat 366  Q
    ||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  14140668 aaacctaaaaaatcacctgcacgaacaccaaaggcacattttaatggattcattttcaatccatat 14140603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 268472 - 268552
Alignment:
Q  286 tttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatat 366  Q
    ||||| ||||| || |||||||  || |||| |||||| || |||||||||||||||||||||||||||||||||||||||    
T  268472 tttttgtgcacaacaaaacctaagaagtcacttgcacatacgccaaatgcacattttaatggattcattttcaatccatat 268552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 4 - 397
Target Start/End: Original strand, 14744757 - 14745161
Alignment:
Q  4 ctgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctc 103  Q
    ||||||| ||||||||||||||  | ||  ||||||| || |||||||  |||||||| | ||||||||| |||||||||||||| || |||||||||||    
T  14744757 ctgctatatacaatttcattctcctatctttcaataaaggagaaagaaccggaggattcaccagatatgatttgatttcatcgaaagctttttggtgctc 14744856  T
Q  104 cgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttg 192  Q
     | ||||||||| |||| ||| |||||||||| |||||||| ||| |||||||||||||| || ||||||| |||||||||           ||||||||    
T  14744857 tggctcccatttgaaaacatcatctttctttagtcggagtaatggtgagaaagcttgtgtcttaccacttaaatttgatataaacctctagagaaagttg 14744956  T
Q  193 atttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttat 292  Q
    |||||||| || ||||| |||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14744957 atttttcccaataatgactgcaactctttctttgtagaaggagctttggtctcgattattgccttggttttgttctggttgatttcgattccctttttat 14745056  T
Q  293 gcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcg 392  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  14745057 gcaccacgaaacctagaaaatcacctgcacaaacctcaaatgcacattttaatggattcattttcaatccatatcgcctcatccattcaaatgatcggcg 14745156  T
Q  393 taaat 397  Q
    |||||    
T  14745157 taaat 14745161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 45 - 492
Target Start/End: Original strand, 15151727 - 15152185
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  |||||||||| || |||||||||||||||||||||  | ||||||||||| |  |||||||| |||| ||| |||||||||| ||||||||    
T  15151727 gaaagaaccggaggatttaccaaatatgacttgatttcatcgaaaactttttggtgctctggttcccatttgaaaacatcatctttctttagtcggagta 15151826  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||||||||||| ||||||||||| ||||||||           |||||||||  |||||||  |  || ||||||||||||||||| |||||    
T  15151827 gtggtgagaaagcttgtgtcttgccacttaggtttgatataaacctccggagaaagttgacctttcctagtagagactgcaactctttcttcgtggaagg 15151926  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    |||||  ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  15151927 agctttggtctcgattattgccttggttttgttttggttaatctcgattccctttttatgcacgacgaaacctaagaaatcacctgcacaaaccccaaat 15152026  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||| || ||  |||||||||||| |||||||||||| || |||||||||||||| |    
T  15152027 gcacattttaaaggattcattttcagtccatattgcctcatcctttcgaatgactggcgtaaatgttccaaatgtctttcttctgaagaagattttacta 15152126  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||||||||| || ||||  ||||||||||| ||||| |||||||| ||||||||||||    
T  15152127 caatatcatcgatataaacctgcataaaattttctataaaatcatggaacattaaattc 15152185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 45 - 492
Target Start/End: Original strand, 13287197 - 13287646
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  ||||| |||| || ||||||||||||||||||||| || ||||||||||| |  |||||||| |||| ||| |||||||||| ||||||||    
T  13287197 gaaagaaccggagggtttaccaaatatgacttgatttcatcgaaagctttttggtgctctggttcccatttgaaaacatcatctttctttagtcggagta 13287296  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||||||||| | ||||||||||| ||||||||           |||||||||| |||||||  |  || |||||||||||||| ||||||||    
T  13287297 gtggtgagaaagcttgtttcttgccacttaggtttgatataaacctccggagaaagttgatctttcctagtagagactgcaactctttctttgtagaagg 13287396  T
Q  234 ag-cttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaa 332  Q
    || ||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  13287397 agtcttga-tctcgattattgccttggttttgttctggttgatctcgatcccctttttatgcacgacgaaccctaagaaatcacctgcacaaaccccaaa 13287495  T
Q  333 tgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacc 432  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||| || |||||||||         |||||||| || |||||||||||||| ||     
T  13287496 tgcacattttaaaggattcattttcaatccatattgcctcatcctttcgaatgatcggcgt---------aaatgtctctcttccgaagaagatttcact 13287586  T
Q  433 acaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    ||||| ||||| || ||||  ||||||||||| |||||||||||||| ||||||||||||    
T  13287587 acaatgtcatcgatataaacctgcataaaattttctatgaaatcatggaacattaaattc 13287646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 41 - 482
Target Start/End: Original strand, 18560379 - 18560830
Alignment:
Q  41 tggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcgg 140  Q
    ||||||||| || |||||||| |||| |||||| |||||||| || || ||||||||||| || |  |||||||| || | |||||||| |||||  ||     
T  18560379 tggtgaaagtataggaggattaatcaaatatgatttgatttcttcaaaagccttttggtgttctggttcccatttgaacacatcttctt-ctttagacga 18560477  T
Q  141 agtagtggcgagaaagcttgtgttttgccacttagatttgatatgaa-----------agttgatttttcctaacaatgattgcaactctttcttcgtag 229  Q
    |||| ||||||||||| || ||||||||| ||||| || ||||||||           ||||||||||||||| ||| || |||||||||||||| || |    
T  18560478 agtaatggcgagaaagtttttgttttgccgcttaggttcgatatgaaccttttgagaaagttgatttttcctagcaaagactgcaactctttctttgtcg 18560577  T
Q  230 aaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaacccc 329  Q
    |||| ||||||||||| |||||||| ||||||||||| |  || || | |||||| ||||| || || || ||||||| |||||||||||||||||| ||    
T  18560578 aaggggcttgagtctccattattgctttggttttgtttttattaatcttgattccttttttgtggacaacaaaacctaaaaaatcacctgcacaaacacc 18560677  T
Q  330 aaatgcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagatttt 429  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||| || ||||||||||| || |  || ||| | || || ||||| | || |    
T  18560678 aaatgcacattttaatggattaatttttaatccatattgcctcatcctttcgaatgatcggcgtaagtgatctaagtgtttatcttctgaagatggttat 18560777  T
Q  430 accacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaa 482  Q
    || || |||||||| ||||||| |||||| |||| ||||||||| ||||||||    
T  18560778 actacgatatcatcgatgtaaacttgcatgaaatcctctatgaagtcatgaaa 18560830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 393 - 492
Target Start/End: Original strand, 14748104 - 14748203
Alignment:
Q  393 taaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  14748104 taaatgttccaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaacttgcataaaatcctctatgaaatcatggaacattaaattc 14748203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 45 - 492
Target Start/End: Complemental strand, 71799 - 71341
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  |||||||||| || |||||||||||||||| |||| |||||||||||||| |  |||||||| |||| ||| |||||| ||||||||||||    
T  71799 gaaagaaccggaggatttaccaaatatgacttgatttcagcgaaagccttttggtgctctggttcccatttgaaaacatcatctttcattaatcggagta 71700  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||||||||||| |||| |||||| ||||||||           ||||||||||||||||||| |  || || || |||||||| ||||||||    
T  71699 gtggtgagaaagcttgtgtcttgctacttaggtttgatataaagcgtcggagaaagttgatttttcctaatagagactgtaattctttctttgtagaagg 71600  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    ||| |  ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||  ||||||||||||||||||||||||    
T  71599 agccttggtctcaattattgccttggttttgttctggttgatctcgattccttttttgtgcacaacgaaccctaagaaatcacctgcacaaaccccaaat 71500  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||||| || |||||||||||||||| ||| ||||| || |||||||||||||| || |    
T  71499 gcacattttaaaggattcatttttaatccatattgcctcatcctttcgaatgatcggcgtaaatgttccaagtgtctctcttccgaagaagatttcacta 71400  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||||||||| |||||||  |||||||||||||||||||| || || ||||||||||||    
T  71399 caatatcatctatgtaaacctgcataaaattctctatgaagtcttggaacattaaattc 71341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 45 - 492
Target Start/End: Original strand, 20856 - 21314
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  ||||| |||| || ||||||||||||||||||||| || ||||||||||| | ||||||||| |||| ||| |||||||||| ||||||||    
T  20856 gaaagaaccggagggtttaccaaatatgacttgatttcatcgaaagctttttggtgctctggctcccatttgaaaacatcatctttctttagtcggagta 20955  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||||||||||| ||||||||||| ||||||||           |||||||||| |||||||  |  || |||||||||||||| ||||||||    
T  20956 gtggtgagaaagcttgtgtcttgccacttaggtttgatataaacctccggagaaagttgatctttcctagtagagactgcaactctttctttgtagaagg 21055  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    |||||  || || |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||||||||||| |||||    
T  21056 agctttggtttcgattattgctttagttttgttctggttgatttcgatcccctttttatgcacgacgaaacctaagaaatcacctgcacaaacctcaaat 21155  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||||||||| ||||||||||||||||||||| |||||||  |||| || ||| |||||||||||| |||||||||||| |||||||||||||| || |    
T  21156 gcacattttaaaggattcattttcaatccatattgcctcataatttcgaatgattggcgtaaatgttccaaatgtctttcttccgaagaagatttcacta 21255  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||| ||||| || ||||  ||||||||||| |||||||||||||| ||||||||||||    
T  21256 caatgtcatcgatataaacctgcataaaattttctatgaaatcatggaacattaaattc 21314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 68 - 492
Target Start/End: Complemental strand, 13365 - 12930
Alignment:
Q  68 atatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttg 167  Q
    ||||||||||||||||||||| || ||||||||||| |  |||||||| |||| ||| |||||||||| |||||||||||| |||||||||||||| |||    
T  13365 atatgacttgatttcatcgaaagctttttggtgctctggttcccatttgaaaacatcatctttctttagtcggagtagtggtgagaaagcttgtgtcttg 13266  T
Q  168 ccacttagatttgatatgaa-----------agttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgcct 256  Q
    |||||||  |||||||||||           ||||||| |||||||  |  || |||||||||||||| ||||||||||| |  ||||||||||||||||    
T  13265 ccacttaagtttgatatgaacctccggagaaagttgatctttcctagtagggactgcaactctttctttgtagaaggagccttggtctcaattattgcct 13166  T
Q  257 tggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcatttt 356  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||| ||||  ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  13165 tggttttgttctggttgatctcgatcccctttttatgcacgacgaaccctaagaaatctcctgcacaaaccccaaatgcacattttaaaggattcatttt 13066  T
Q  357 caatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgc 456  Q
    |||||||||| ||||||| ||||| || |||||||||||||||| ||||||||| || || ||||||||||| || ||||| |||||||||||||  |||    
T  13065 caatccatatagcctcattctttcgaatgatcggcgtaaatgttccaaatgtctctcttctgaagaagatttcactacaatgtcatcaatgtaaacctgc 12966  T
Q  457 ataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||||||| |||||||| ||||| |||||| |||||    
T  12965 ataaaattttctatgaagtcatggaacattgaattc 12930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 54 - 492
Target Start/End: Original strand, 14340486 - 14340935
Alignment:
Q  54 ggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgaga 153  Q
    |||||||||| || ||| ||||||||||||||||| || ||||||||||| |  |||||||| |||||||| |||||||| ||||| || | ||| ||||    
T  14340486 ggaggatttaccaaataagacttgatttcatcgaaagctttttggtgctcaggttcccatttgaaaatatcatctttcttcaatcgaagcaatggtgaga 14340585  T
Q  154 aagcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagt 242  Q
    |||||||||| ||||||||||||||||||||           ||||||||||||||||||| |  || || || |||||||| ||||||||||| |  ||    
T  14340586 aagcttgtgtcttgccacttagatttgatataaatctttggagaaagttgatttttcctaatagagactgtaattctttctttgtagaaggagccttggt 14340685  T
Q  243 ctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacatttt 342  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||  ||||||||| |||||||||||||||||||||||    
T  14340686 ctcaattattgctttggttttgttctggttgatctcgattccttttttgtgcacaacgaaacctaagaaatcacctccacaaaccccaaatgcacatttt 14340785  T
Q  343 aatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcat 442  Q
    |||||||||||||||||||||||| ||||||||||||| || ||| | || ||||||| ||| ||||| || |||||||||||||| || ||||| ||||    
T  14340786 aatggattcattttcaatccatattgcctcatcctttcgaatgattgacgcaaatgttccaagtgtctctcttccgaagaagatttcactacaatgtcat 14340885  T
Q  443 caatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    | |||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  14340886 ctatgtaaacctgcataaaattctctatgaagtcatggaacattaaattc 14340935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 45 - 492
Target Start/End: Original strand, 18169453 - 18169911
Alignment:
Q  45 gaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagta 144  Q
    |||||||  ||||| |||| || |||| |||||||||||||||| || ||||||||||| || |||||||| |||| ||| |||||||||| ||| ||||    
T  18169453 gaaagaaccggagggtttaccaaatataacttgatttcatcgaaagctttttggtgctctgtttcccatttgaaaacatcatctttctttagtcgaagta 18169552  T
Q  145 gtggcgagaaagcttgtgttttgccacttagatttgatatgaa-----------agttgatttttcctaacaatgattgcaactctttcttcgtagaagg 233  Q
    |||| |||||| ||||||| ||||||||||| |||||||||||           ||||||| |||||||  |  || |||||||||||||| ||||||||    
T  18169553 gtggtgagaaaacttgtgtcttgccacttaggtttgatatgaaccttcggagaaagttgatctttcctagtagagactgcaactctttctttgtagaagg 18169652  T
Q  234 agcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaat 333  Q
    |||||  ||||| |||||||| || ||||||||||||||||| ||||||||||||| |||||| ||||| || |  ||||||||||||||||||||||||    
T  18169653 agctttggtctcgattattgcttttgttttgttctggttgatctcgattcccttttaatgcacgacgaaccccaagaaatcacctgcacaaaccccaaat 18169752  T
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||| ||| ||||| || |||||||||||||| || |    
T  18169753 gcacactttaaaggattcattttcaatccatattgcctcatcctttcgaatgatcggcgtaaatgttccaagtgtctctcttccgaagaagatttcacta 18169852  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||| ||||| |||||||  |||||||||||||||||||| ||||| ||||||||||||    
T  18169853 caatgtcatctatgtaaacctgcataaaattctctatgaagtcatggaacattaaattc 18169911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 492
Target Start/End: Original strand, 13276022 - 13276180
Alignment:
Q  334 gcacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttacca 433  Q
    |||||||| |||||||||||||||||||||||    |||||||| |  || |||   || |  |||||||||||    || ||||| |||||||||||||    
T  13276022 gcacatttcaatggattcattttcaatccatactttctcatcctcttgaatgataatcgaaggtgtttcaaatgatcgtcttccgacgaagattttacca 13276121  T
Q  434 caatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
    |||||||||||||||| ||||||||||| ||  | |||||||||| ||||||| |||||    
T  13276122 caatatcatcaatgtagatttgcataaatttgccaatgaaatcattaaacattgaattc 13276180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 428 - 486
Target Start/End: Original strand, 16033523 - 16033581
Alignment:
Q  428 ttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacatt 486  Q
    |||||| ||||||||||||||||||||||||||| || || || |||||||||||||||    
T  16033523 ttaccataatatcatcaatgtaaatttgcataaatttatcaataaaatcatgaaacatt 16033581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 18457884 - 18457830
Alignment:
Q  309 aaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatcca 363  Q
    |||||||||||||| ||| |||||  |||||||||||||||||||||||||||||    
T  18457884 aaaatcacctgcacgaacaccaaagacacattttaatggattcattttcaatcca 18457830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 18458083 - 18458024
Alignment:
Q  122 atcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttga 181  Q
    |||||||||||||  ||| |||||||||||||||||||  ||||||| ||||||||||||    
T  18458083 atcttctttctttggtcgaagtagtggcgagaaagcttcagttttgctacttagatttga 18458024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 68 - 485
Target Start/End: Complemental strand, 33316 - 32888
Alignment:
Q  68 atatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttg 167  Q
    ||||||||||||||||| ||| || |||||||| || |  |||||||| |||| ||| |||||||||| |||||||||||| ||||||||||||||||||    
T  33316 atatgacttgatttcattgaaagctttttggtgttctggttcccatttgaaaacatcatctttctttagtcggagtagtggtgagaaagcttgtgttttg 33217  T
Q  168 ccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgcct 256  Q
    |||||||| ||||||||           |||||||||| || ||||  |  || |||||||||||||| |||||||||||||  ||||| ||||||||||    
T  33216 ccacttaggtttgatataaacctccggagaaagttgatcttgcctagtagagactgcaactctttctttgtagaaggagctttggtctcgattattgcct 33117  T
Q  257 tggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcatttt 356  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  33116 tggttttgttctggttgatttcgattccttttttatgcacgacgaaacctaagaaatcacctgcacaaaccccaaatgcacattttaaaggattcatttt 33017  T
Q  357 caatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgc 456  Q
    ||||||||||  |||||||||||| || ||| |||||| || || ||||||||| || || ||||||||||| || |||||||||||||| ||||  |||    
T  33016 caatccatatttcctcatcctttcgaatgattggcgtagatattccaaatgtctctcttctgaagaagatttcactacaatatcatcaatataaacctgc 32917  T
Q  457 ataaaattctctatgaaatcatgaaacat 485  Q
    |||||||| ||||| |||||||| |||||    
T  32916 ataaaattttctataaaatcatggaacat 32888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 55 - 492
Target Start/End: Original strand, 35487 - 35936
Alignment:
Q  55 gaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaa 154  Q
    ||||||||| || ||||||||||||||||||||| || ||||||||||| |  |||||||| |||| ||| ||||||||||| ||||||||||| |||||    
T  35487 gaggatttaccaaatatgacttgatttcatcgaaagctttttggtgctctggttcccatttgaaaacatcatctttctttaaacggagtagtggtgagaa 35586  T
Q  155 agcttgtgttttgccacttagatttgatat-----------gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtc 243  Q
    ||||||||| ||||||||||| || |||||           ||||||||||||| ||||  |  || ||||||||||||||||| ||||||||||  |||    
T  35587 agcttgtgtcttgccacttaggttcgatataaacctccggagaaagttgattttccctagtagagactgcaactctttcttcgtggaaggagctttggtc 35686  T
Q  244 tcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacatttta 343  Q
    || |||||||||||||||||||| |||||  | |||||||| ||||||||||| |  |||||||  ||||||||||||||||||||||||||||||||||    
T  35687 tcgattattgccttggttttgttttggttattctcgattccttttttatgcacgaaaaaacctaagaaatcacctgcacaaaccccaaatgcacatttta 35786  T
Q  344 atggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatc 443  Q
    | ||||||||||||||||||||| ||||||||||||| || ||  |||||||||||| |||||||||||| || |||||||||||||| |||||||||||    
T  35787 aaggattcattttcaatccatattgcctcatcctttcgaatgactggcgtaaatgttccaaatgtctttcttctgaagaagattttactacaatatcatc 35886  T
Q  444 aat-gtaaatttgcataaaattctctatgaaatcatgaaacattaaattc 492  Q
     ||  ||||  |||||||| || |||||||||||||| ||||||||||||    
T  35887 gataataaacctgcataaagttttctatgaaatcatggaacattaaattc 35936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 54 - 485
Target Start/End: Complemental strand, 1344 - 902
Alignment:
Q  54 ggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctccgtctcccatttaaaaatatcttctttctttaatcggagtagtggcgaga 153  Q
    ||||| || |||| ||| || |||||||| ||||| ||| |||||||||| |  |||||||| || |||||||||||||| |  || |||| ||||||||    
T  1344 ggagggttaatcaaatacgatttgatttcttcgaaagccctttggtgctctggttcccatttgaacatatcttctttcttcagacgaagtaatggcgaga 1245  T
Q  154 aagcttgtgttttgccacttagatttgatatgaa-----------agttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagt 242  Q
    || | ||||| |||||||||||||| ||||||||           ||||||||||||| || || || ||||  |||||||| |||||||| ||||||||    
T  1244 aaacctgtgtcttgccacttagattcgatatgaatcttttgagaaagttgatttttcccaataaagactgcagatctttctttgtagaaggggcttgagt 1145  T
Q  243 ctcaattattgccttggttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacatttt 342  Q
    ||| |||||| ||||||||||||| ||||  ||||| |||||||||||  | ||||| ||||||| |||||||||||||||||| |||||  | ||||||    
T  1144 ctctattattaccttggttttgttttggtaaatttcaattccctttttgaggaccacaaaacctaaaaaatcacctgcacaaacaccaaacacgcatttt 1045  T
Q  343 aatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcat 442  Q
    |||||||||||||| ||||||||| |||| |||||||| || || | |||||| ||    || ||| |||| || || || |||||||| |||| |||||    
T  1044 aatggattcatttttaatccatattgccttatcctttcgaatgaactgcgtaagtgaactaagtgtttttcttctgaggatgattttactacaacatcat 945  T
Q  443 caatgtaaatttgcataaaattctctatgaaatcatgaaacat 485  Q
    | |||||||||||||| |||| ||||||||| |||||||||||    
T  944 cgatgtaaatttgcatgaaatcctctatgaagtcatgaaacat 902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 151261 - 150940
Alignment:
Q  5 tgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctcc 104  Q
    |||||||||||| |||||||||||  |  | |||||||||||||| || ||||| || |||| |||||| |||||||  ||||||||||||||||| |      
T  151261 tgctatgtacaacttcattcttttaccttttaataatggtgaaagtatgggagggttaatcaaatatgatttgattttgtcgaaggccttttggtgtttt 151162  T
Q  105 gtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttgatatgaa-----------agttga 193  Q
    |  ||| |||| |||| |||||| ||||| || || |||| |||||||| ||||| ||| |||||||||| ||| ||||||||           |||| |    
T  151161 ggttccaatttgaaaacatcttccttcttcaagcgaagtaatggcgagacagcttatgtcttgccacttaaattcgatatgaatcttctaagaaagttta 151062  T
Q  194 tttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattccctttttatg 293  Q
    ||||| |||  || || |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  151061 ttttttctagtaaagactgcaactctttctttgtagaaggggcctgagtctcaattattgccttggttttgttctggttgatttcaattccctttttatg 150962  T
Q  294 caccacgaaacctagaaaatca 315  Q
     ||||||||||||| |||||||    
T  150961 gaccacgaaacctaaaaaatca 150940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 271 - 485
Target Start/End: Complemental strand, 85310 - 85096
Alignment:
Q  271 ttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcc 370  Q
    |||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  85310 ttgatttcaattccctttttatggaccacgaaacctaaaaagtcacctgcacaaacaccaaacgcacattttaatggattcattttcaatccatattgcc 85211  T
Q  371 tcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctat 470  Q
    |||||||||  || |||||||||||||| |  || ||| | |||||  |||| ||||| |||||||| ||||  || |||| |||||| ||||  |||||    
T  85210 tcatcctttagaatgatcggcgtaaatgatctaagtgtttctcctctaaagaggatttcaccacaatgtcatagatataaaattgcatgaaatcttctat 85111  T
Q  471 gaaatcatgaaacat 485  Q
    ||||||||| |||||    
T  85110 gaaatcatggaacat 85096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 335 - 485
Target Start/End: Complemental strand, 77439 - 77289
Alignment:
Q  335 cacattttaatggattcattttcaatccatatcgcctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccac 434  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||| |  || ||| | |||||  |||| ||||| |||||    
T  77439 cacattttaatggattcattttcaatccatattgcctcatcctttagaatgatcggcgtaaatgatctaagtgtttctcctctaaagaggatttcaccac 77340  T
Q  435 aatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaacat 485  Q
    ||| ||||  || ||||||||||| ||||  |||||||||||||| |||||    
T  77339 aatgtcatagatataaatttgcatgaaatcttctatgaaatcatggaacat 77289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 485
Target Start/End: Complemental strand, 150928 - 150828
Alignment:
Q  385 gatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctctatgaaatcatgaaaca 484  Q
    |||||||||||||| |  || ||| | |||||  |||| ||||| |||||||| ||||  || ||||||||||| ||||  |||||||||||||| ||||    
T  150928 gatcggcgtaaatgatctaagtgtttctcctctaaagaggatttcaccacaatgtcatagatataaatttgcatgaaatcttctatgaaatcatggaaca 150829  T
Q  485 t 485  Q
    |    
T  150828 t 150828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 66426 - 66293
Alignment:
Q  185 gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcc 284  Q
    ||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  66426 gaaagttgatttttcctagtaatgactgcaattctttcttcgtagaaggagctttggtctcaattattgccttggttttgttctggttgatttcgattcc 66327  T
Q  285 ctttttatgcaccacgaaacctagaaaatcacct 318  Q
    |||||||||||| |||||||||||||| ||||||    
T  66326 ctttttatgcactacgaaacctagaaagtcacct 66293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 75604 - 75471
Alignment:
Q  185 gaaagttgatttttcctaacaatgattgcaactctttcttcgtagaaggagcttgagtctcaattattgccttggttttgttctggttgatttcgattcc 284  Q
    ||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  75604 gaaagttgatttttcctagtaatgactgcaattctttcttcgtagaaggagctttggtctcaattattgccttggttttgttctggttgatttcgattcc 75505  T
Q  285 ctttttatgcaccacgaaacctagaaaatcacct 318  Q
    |||||||||||| |||||||||||||| ||||||    
T  75504 ctttttatgcactacgaaacctagaaagtcacct 75471  T

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Target: scaffold0023; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 66573 - 66422
Alignment:
Q  5 tgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctcc 104  Q
    |||||| ||||||||||||||  | ||  ||||||| || |||||||  ||||| |||| ||||||||||||||||||||| || || |||||||| |      
T  66573 tgctatatacaatttcattctcctatctttcaataaaggggaaagaaccggagggtttaccagatatgacttgatttcatcaaaagctttttggtgtttt 66474  T
Q  105 gtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaag 156  Q
    |  |||||||| |||| ||| |||||||||| |||||||| ||| |||||||    
T  66473 ggttcccatttgaaaacatcatctttctttagtcggagtattggtgagaaag 66422  T

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Target: scaffold0023; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 75751 - 75600
Alignment:
Q  5 tgctatgtacaatttcattcttttgtccctcaataatggtgaaagaattggaggatttatcagatatgacttgatttcatcgaaggccttttggtgctcc 104  Q
    |||||| ||||||||||||||  | ||  ||||||| || |||||||  ||||| |||| ||||||||||||||||||||| || || |||||||| |      
T  75751 tgctatatacaatttcattctcctatctttcaataaaggggaaagaaccggagggtttaccagatatgacttgatttcatcaaaagctttttggtgtttt 75652  T
Q  105 gtctcccatttaaaaatatcttctttctttaatcggagtagtggcgagaaag 156  Q
    |  |||||||| |||| ||| |||||||||| |||||||| ||| |||||||    
T  75651 ggttcccatttgaaaacatcatctttctttagtcggagtattggtgagaaag 75600  T

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Target: scaffold0757 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 283 - 380
Target Start/End: Complemental strand, 2976 - 2879
Alignment:
Q  283 ccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaatccatatcgcctcatcctttc 380  Q
    |||||||| ||||| || ||||||| || ||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||  ||||||||||||    
T  2976 ccctttttgtgcacaacaaaacctaaaatatcacctgcacgaataccaaaggcacattttaatggattcattttcaatccatatttcctcatcctttc 2879  T

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Target: scaffold0757; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 3147 - 3088
Alignment:
Q  122 atcttctttctttaatcggagtagtggcgagaaagcttgtgttttgccacttagatttga 181  Q
    |||| ||||||| ||||| || ||||||||||||||||  |||||||||| |||||||||    
T  3147 atctgctttcttcaatcgaagcagtggcgagaaagcttcagttttgccacatagatttga 3088  T

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Target: scaffold0401 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 5913 - 5810
Alignment:
Q  260 ttttgttctggttgatttcgattccctttttatgcaccacgaaacctagaaaatcacctgcacaaaccccaaatgcacattttaatggattcattttcaa 359  Q
    ||||||| || ||||| || || || ||||| || || || ||||||| |||||||||| |||  || ||||||||||||||||||||||||||||||||    
T  5913 ttttgttttgattgatctcaatgccttttttgtgaacaacaaaacctaaaaaatcacctacacgtacaccaaatgcacattttaatggattcattttcaa 5814  T
Q  360 tcca 363  Q
    ||||    
T  5813 tcca 5810  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 485
Target Start/End: Original strand, 177471 - 177586
Alignment:
Q  370 ctcatcctttcaaacgatcggcgtaaatgtttcaaatgtctttcctccgaagaagattttaccacaatatcatcaatgtaaatttgcataaaattctcta 469  Q
    ||||||||||| || ||||||||||  || |  || ||| ||||||| ||||| |||||||||||||| || |  || ||||||||||| ||||  ||||    
T  177471 ctcatcctttcgaatgatcggcgtaggtgatctaagtgtttttcctctgaagaggattttaccacaatgtcgttgatataaatttgcatgaaatcttcta 177570  T
Q  470 tgaaatcatgaaacat 485  Q
    ||||||||||||||||    
T  177571 tgaaatcatgaaacat 177586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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