View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7219_low_6 (Length: 371)
Name: NF7219_low_6
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7219_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 28151803 - 28151991
Alignment:
| Q |
1 |
tcatttggggaagcaaaaatacagcatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtctcccaaaaga |
100 |
Q |
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| T |
28151803 |
tcatttggggaatcaaaaatacaacatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtctcccaaaaga |
28151902 |
T |
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| Q |
101 |
ttcaccttcaaaaggggatgtattatactttatctggtgagatttattgtcataaattaaagtttaactttgatatattgtaaacaaat |
189 |
Q |
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| T |
28151903 |
ttcaccttcaaaaggggatgtattatactttatctggtgagatttattgtcataaattaaagtttaactttgatatattgtaaacaaat |
28151991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 189 - 350
Target Start/End: Original strand, 28152251 - 28152412
Alignment:
| Q |
189 |
taatatgcactaatttatagttataggtagttatgaataaaatcaaacgcttttgaattgtgcagcttggttacaagtgagtaatggaaatgttcctgta |
288 |
Q |
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| T |
28152251 |
taatatgcactaatttatagttataggtagttatgaataaaatcaaacgcttttgaattgtgcagcttggttacaagtgagtaatggaaatgttcctgta |
28152350 |
T |
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| Q |
289 |
acagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctgaatctaa |
350 |
Q |
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| T |
28152351 |
acagcagtagttaaaacaaatgaaggatttaaattttgtggtgtcatttttgcggaatctaa |
28152412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 8024359 - 8024250
Alignment:
| Q |
244 |
aattgtgcagcttggttacaagtgagtaatggaaatgttcctgtaacagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctg |
343 |
Q |
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|||| |||||||||| ||||||||||| | | || ||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||||||| |
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| T |
8024359 |
aattatgcagcttggatacaagtgagtgaggaaactgttcctgtcacagcagtagtcaaaacaaccaaaggatttaaatttggtggtgctatttttgctg |
8024260 |
T |
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| Q |
344 |
aatctaattg |
353 |
Q |
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| T |
8024259 |
agcctaattg |
8024250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 8024953 - 8024848
Alignment:
| Q |
2 |
catttggggaagcaaaaatacagcatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtctcccaaaagat |
101 |
Q |
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|||||||||| |||| ||| | |||||| |||||||||| ||||||| ||||||| | ||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
8024953 |
catttggggatgcaataattgaacatagaaaatcattaggcaacaaatttgtggtaacacatagtagaaatcaaccacatgatagtgtctcacaaaagat |
8024854 |
T |
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| Q |
102 |
tcacct |
107 |
Q |
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| |||| |
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| T |
8024853 |
ttacct |
8024848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 21546091 - 21546003
Alignment:
| Q |
2 |
catttggggaagcaaaaatacagcatagagaatcattaggtaacaaatatgtggtagctcatagcagaaatcaaccatatgatagtgtc |
90 |
Q |
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|||||||| | |||| |||| | |||||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||| |
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| T |
21546091 |
catttgggaatgcaagaatagaacatagagaatcattgggtaacaaatatgtggtagccaataacagaaatcaaccacatgatagtgtc |
21546003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 21544771 - 21544671
Alignment:
| Q |
244 |
aattgtgcagcttggttacaagtgagtaatggaaatgttcctgtaacagcagtagtcaaaacaaatgaaggatttaaattttgtggtgtcatttttgctg |
343 |
Q |
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|||| |||||||||| ||||||||||| | | ||||| | ||||||||| | |||||||||| |||||||||||||||| |||||| ||||| ||||| |
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| T |
21544771 |
aattatgcagcttggatacaagtgagtgaggcgaatgtcctggtaacagcaatggtcaaaacaactgaaggatttaaatttggtggtgccatttatgctg |
21544672 |
T |
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| Q |
344 |
a |
344 |
Q |
| |
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| |
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| T |
21544671 |
a |
21544671 |
T |
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