View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7219_low_7 (Length: 359)

Name: NF7219_low_7
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7219_low_7
NF7219_low_7
[»] chr5 (1 HSPs)
chr5 (59-355)||(3948649-3948945)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 59 - 355
Target Start/End: Original strand, 3948649 - 3948945
Alignment:
Q  59 aaccatgtcattggtgtaaagtatctaccaacttcgtcaatgatatatctccgtacaaaaacctggttcgccgcctttactggagttccccctcccaacc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3948649 aaccatgtcattggtgtaaagtatctaccaacttcgtcaatgatatatctccgtacaaaaacctggttcgccgcctttactggagttccccctcccaacc 3948748  T
Q  159 acaaagctctcttttgcatattgtttgcccaagttgtaagcctaatatgctcttaatgaccatttagcaaaattttagtgggaagaaaaataaacatgaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3948749 acaaagctctcttttgcatattgtttgcccaagttgtaagcctaatatgctcttaatgaccatttagcaaaattttagtgggaagaaaaataaacatgaa 3948848  T
Q  259 taaagcatgttaacaatttttgactaagaagtaagtatataatcccttaggtgtggtttggatagctactaacgtgtgtttgacctaacaccaaact 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3948849 taaagcatgttaacaatttttgactaagaagtaagtatataatcccttaggtgtggtttggatagctactaacgtgtgtttgacctaacaccaaact 3948945  T

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