View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7220_high_2 (Length: 464)
Name: NF7220_high_2
Description: NF7220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7220_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 18982617 - 18982174
Alignment:
| Q |
1 |
aaagttttcacctatttcttgagtggaggagaatgatgaagggtgttatttatcggannnnnnnnn-cctttaaattttgtgactttttaggttgaggaa |
99 |
Q |
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| T |
18982617 |
aaagttttcacctatttcttgagtggaggagaatgatgaagggtgtg-tttatcggattttttttttcctttaaattttgtgactttttaggttgaggaa |
18982519 |
T |
|
| Q |
100 |
ttatctcttattcatgatcaagattcagggatagttggacttttattattctcagaatttaagtatttcttcaagaatattatcataaagtgaaatattg |
199 |
Q |
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| T |
18982518 |
ttatctcttattcatgatcaagattcagggatagttggacttttattattctcagaatttaagtatttcttcaagtatattatcataaagtgaaatattg |
18982419 |
T |
|
| Q |
200 |
catttgtgattgaacaaaattaaggtttttcttcaaccgtggagtacatgtggttccattaagatcattggatcatctaccaaatgattcttgaagaaat |
299 |
Q |
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| T |
18982418 |
catttgtgattgaacaaaattaaggtttttcttcaaccgtggagtacatga--ttccattaagatcattggatcatctaccaaatgattcttgaagaaat |
18982321 |
T |
|
| Q |
300 |
tatatgcttgtggaatcaagagaattgaggctcttgatgaaagtatatgcttggttcaactaagtagctacgtgtctctctggattatataattcgaaca |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18982320 |
catatgcttgtggaatcaagagaattgaggctcttgatgaaagtatatgcttggttcaactaagtagctacgtgactctctggattatataattcgaaca |
18982221 |
T |
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| Q |
400 |
tacaaaaaatatcatttagccatgtcaggattttgtaacccggacat |
446 |
Q |
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| T |
18982220 |
tacaaaaaatatcatttagccatgtcaggattttgtaacccggacat |
18982174 |
T |
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