View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7220_high_3 (Length: 383)

Name: NF7220_high_3
Description: NF7220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7220_high_3
NF7220_high_3
[»] chr4 (3 HSPs)
chr4 (4-303)||(22022333-22022634)
chr4 (300-343)||(16499114-16499157)
chr4 (286-335)||(35368336-35368385)
[»] chr2 (3 HSPs)
chr2 (288-343)||(25332393-25332448)
chr2 (283-344)||(25331915-25331976)
chr2 (283-343)||(17768412-17768472)
[»] chr3 (2 HSPs)
chr3 (283-344)||(32998933-32998994)
chr3 (292-344)||(49976884-49976936)
[»] scaffold0421 (1 HSPs)
scaffold0421 (299-344)||(7286-7331)
[»] chr8 (4 HSPs)
chr8 (299-344)||(13544547-13544592)
chr8 (299-344)||(13545201-13545246)
chr8 (299-344)||(13679227-13679272)
chr8 (299-344)||(13679881-13679926)
[»] chr6 (1 HSPs)
chr6 (299-344)||(33771447-33771492)
[»] chr5 (1 HSPs)
chr5 (283-343)||(41696071-41696131)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 303
Target Start/End: Complemental strand, 22022634 - 22022333
Alignment:
Q  4 aaaggatcattcttcctagcataatcaatttgtagaaacaccaaaatttgtcaaataaggtattaagggggttttgactcttggatacaatggataggga 103  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22022634 aaaggatcattcttcctagcataatcaatctatagaaagaccaaaacttgtcaaataaggtattaaggggggtttgactcttggatacaatggataggga 22022535  T
Q  104 gtaggtttatcaaatagggatgtcccatgatccttaggttt--cacgattatcgattttgttatgagaggttgaaatatggtatgtcaatttgtgtttaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22022534 gtaggtttatcaaatagggatgtcccatgatccttaggtttttcacgattatcgattttgttatgagaggttgaaatatggtatgtcaatttgtgtttaa 22022435  T
Q  202 gaccatcccttgtgatgtgtaacttttgtgttaaattgcataatataaatgtgttgatgatatatgttgtttgttgcttgagtccaattcttatttagtg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22022434 gaccatcccttgtgatgtgtaacttttgtgttaaattgcataatataaatgtgttgatgatatatgttgtttgttgcttgagtccaattcttatttagtg 22022335  T
Q  302 tg 303  Q
    ||    
T  22022334 tg 22022333  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 16499157 - 16499114
Alignment:
Q  300 tgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 343  Q
    ||||||||||||||||||  |||||||||||||||| |||||||    
T  16499157 tgtgttaaaagagagtgttagtgggtgtgaccctagcatttctc 16499114  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 35368385 - 35368336
Alignment:
Q  286 caattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctag 335  Q
    ||||| |||||| ||||||||||||| |||||| |||| |||||||||||    
T  35368385 caatttttatttggtgtgttaaaagaaagtgtcagtggatgtgaccctag 35368336  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 25332393 - 25332448
Alignment:
Q  288 attcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 343  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||    
T  25332393 attcttatttagtgtgttaaaagagagtgttcgtgggtgtgatcctagcatttctc 25332448  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 25331976 - 25331915
Alignment:
Q  283 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||| |||||  ||||| |||||||||||||  |||||||||||||||| ||||||||    
T  25331976 gtccaatttttattgggtgtgctaaaagagagtgttagtgggtgtgaccctagcatttctct 25331915  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 17768472 - 17768412
Alignment:
Q  283 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 343  Q
    |||||| |||||||| |||||||||||||||||||  |||| ||| ||||||| |||||||    
T  17768472 gtccaactcttatttggtgtgttaaaagagagtgttagtggatgtcaccctagtatttctc 17768412  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 32998994 - 32998933
Alignment:
Q  283 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||| |||||| ||||||||||||||||||   |||||||||||||||| ||||||||    
T  32998994 gtccaatttttatttggtgtgttaaaagagagtgctagtgggtgtgaccctagcatttctct 32998933  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 49976936 - 49976884
Alignment:
Q  292 ttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    ||||| ||||||||||||||| ||||  ||||||||||| |||| ||||||||    
T  49976936 ttattgagtgtgttaaaagagtgtgttagtgggtgtgacactagcatttctct 49976884  T

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Target: scaffold0421 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 7286 - 7331
Alignment:
Q  299 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||||||||||||||  |||| ||||||||||| ||||||||    
T  7286 gtgtgttaaaagagagtgttagtggatgtgaccctagcatttctct 7331  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 13544592 - 13544547
Alignment:
Q  299 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  13544592 gtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctct 13544547  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 13545201 - 13545246
Alignment:
Q  299 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||||||||||||||  ||||||||||| |||| ||||||||    
T  13545201 gtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctct 13545246  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 13679272 - 13679227
Alignment:
Q  299 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||||||||||||||  ||||||||||| |||| ||||||||    
T  13679272 gtgtgttaaaagagagtgtaagtgggtgtgactctagcatttctct 13679227  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 13679881 - 13679926
Alignment:
Q  299 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||||    
T  13679881 gtgtgttaaaagagagtgttagtgggtgtgagcctagcatttctct 13679926  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 33771447 - 33771492
Alignment:
Q  299 gtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctct 344  Q
    |||||||||||||| ||||  |||||||||||||||| ||||||||    
T  33771447 gtgtgttaaaagagtgtgttagtgggtgtgaccctagcatttctct 33771492  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 41696131 - 41696071
Alignment:
Q  283 gtccaattcttatttagtgtgttaaaagagagtgtcggtgggtgtgaccctaggatttctc 343  Q
    |||||||||| |||| |||||||||||||||||||  |||| || || ||||| |||||||    
T  41696131 gtccaattctgatttggtgtgttaaaagagagtgttagtggctgcgatcctagcatttctc 41696071  T

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