View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_high_15 (Length: 264)
Name: NF7221_high_15
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 15317961 - 15317725
Alignment:
| Q |
11 |
acatcaggaggattagagaattaattttgaagttacttcaaagtggat-aacttcttcatgtccattgttaagttcaagaggattcgaagataaagtatc |
109 |
Q |
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| T |
15317961 |
acatcaggaggattagagaatttattttgaagttacttcaaagtggattaacttcttcatgtccattgttaagttgaagaggattcgaagataaagtatc |
15317862 |
T |
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| Q |
110 |
tattgatcacttttttcaaacagagtgtaaattaaatatcatttgaaaactcttacatgtacaaagggaagatctaaggtttgaacccaaataactacaa |
209 |
Q |
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| T |
15317861 |
tattgatcactttttccaaaaagagtgtaaattaaatatcatttgaaaactcttacatg--caaagggaagatctaaggtttgaacccaaataactacaa |
15317764 |
T |
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| Q |
210 |
atcaaattcatccaaacaattttggaattaacgtgtgtg |
248 |
Q |
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| T |
15317763 |
atcaaattcatccaaacaattttggaattaacgtttgtg |
15317725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 15498330 - 15498094
Alignment:
| Q |
11 |
acatcaggaggattagagaattaattttgaagttacttcaaagtggat-aacttcttcatgtccattgttaagttcaagaggattcgaagataaagtatc |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15498330 |
acatcaggaggattagagaatttattttgaagttacttcaaagtggattaacttcttcatgtccattgttaagttgaagaggattcgaagataaagtatc |
15498231 |
T |
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| Q |
110 |
tattgatcacttttttcaaacagagtgtaaattaaatatcatttgaaaactcttacatgtacaaagggaagatctaaggtttgaacccaaataactacaa |
209 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15498230 |
tattgatcactttttccaaaaagagtgtaaattaaatatcatttgaaaactcttacatg--caaagggaagatctaaggtttgaacccaaataactacaa |
15498133 |
T |
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| Q |
210 |
atcaaattcatccaaacaattttggaattaacgtgtgtg |
248 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
15498132 |
atcaaattcatccaaacaattttggaattaacgtttgtg |
15498094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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