View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_high_2 (Length: 467)
Name: NF7221_high_2
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 39 - 458
Target Start/End: Original strand, 35033889 - 35034304
Alignment:
| Q |
39 |
aaaacgacggatattagtattattaaatgatgtatattttaacgagtgcgtctaaataattttaatttggtgttgtgtctttacaagtatttctggtctt |
138 |
Q |
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| T |
35033889 |
aaaacgacagatattagtattattaaatgatgtatattttaatgagtgcgtctaaataattttaatttggtgttgtgtctgtacaagtatttctggtctt |
35033988 |
T |
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| Q |
139 |
tcttaatcaaaatctctcgaagaacactttttactttttaacgaattgtcactactattacgattttaatgtttgctttgcacactcatatgaaattggt |
238 |
Q |
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| T |
35033989 |
tcttaatcaaaatctctcgaagaacactttttactttttaacgaattgtcactactattacgattttaatgtttgctttgcacactcatatgaaattggt |
35034088 |
T |
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| Q |
239 |
caatggttcaattctcacatataannnnnnnacaagatatttatatttatgtttgtgatcaagcaggtgtatctacctcaaaatagacatggtacttaaa |
338 |
Q |
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| T |
35034089 |
caatggttcaattctcacatatattttttttacaacatatttatatttatgtttgtgatcattcaggtgtatctatctcaaaatagacatggtacttaaa |
35034188 |
T |
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| Q |
339 |
tgtgttaattcatactcctctctcttctaagaactcacatgtaaaagcacacattaaaatcttaataaagtagtgtttattacgacttgtctctctatta |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
35034189 |
tgtgttaattcatactcctctctcttctaagaactcacatgtaaaagcacacattaaaatcttaataaagtagacatggt----acttgtctctctatta |
35034284 |
T |
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| Q |
439 |
gcatccatattcatctcact |
458 |
Q |
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| T |
35034285 |
gcatccatattcatgtcact |
35034304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 45669952 - 45669878
Alignment:
| Q |
60 |
attaaatgatgtatattttaacgagtgcgt--ctaaataattttaatttggtgttgtgtctttacaagtatttct |
132 |
Q |
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|||||||||| ||||||||| ||||| || |||||||||||| |||||||||||| ||| || |||||||||| |
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| T |
45669952 |
attaaatgatagatattttaatgagtgtgtgcctaaataattttgatttggtgttgtctctatataagtatttct |
45669878 |
T |
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