View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7221_high_23 (Length: 222)

Name: NF7221_high_23
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7221_high_23
NF7221_high_23
[»] chr6 (3 HSPs)
chr6 (18-206)||(13394492-13394680)
chr6 (18-207)||(19231914-19232103)
chr6 (91-207)||(1954071-1954187)
[»] chr3 (7 HSPs)
chr3 (23-207)||(25857319-25857497)
chr3 (23-190)||(20398719-20398886)
chr3 (18-189)||(39913540-39913711)
chr3 (91-207)||(4580147-4580263)
chr3 (91-192)||(33620390-33620491)
chr3 (91-207)||(40594111-40594227)
chr3 (18-107)||(25340390-25340479)
[»] chr1 (3 HSPs)
chr1 (18-207)||(42071632-42071821)
chr1 (27-207)||(12486550-12486729)
chr1 (18-176)||(49043646-49043804)
[»] chr2 (1 HSPs)
chr2 (134-207)||(8781102-8781175)
[»] chr4 (1 HSPs)
chr4 (95-207)||(2053315-2053429)
[»] chr8 (1 HSPs)
chr8 (134-207)||(4361147-4361220)
[»] chr7 (2 HSPs)
chr7 (91-204)||(5678589-5678702)
chr7 (91-204)||(5703641-5703754)
[»] chr5 (1 HSPs)
chr5 (140-204)||(19677563-19677627)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 13394492 - 13394680
Alignment:
Q  18 cagatgacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtataatttgggtca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||    
T  13394492 cagatgacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttgggctttccgaaaaggtataatttggatca 13394591  T
Q  118 atcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtcta 206  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  13394592 atcagacaccgaatgaaaaatatgcaccattttgactgaacctttcttgcgtgccacatcgtcttcgattcgtgctgctagcttgtcta 13394680  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 19232103 - 19231914
Alignment:
Q  18 cagatgacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtataatttgggtca 117  Q
    |||| ||||||||||||||||| |||||| |  |||||||| |||  ||| ||||   |||||| ||||  | |||||| |||||||||||||  |  ||    
T  19232103 cagacgacctcgaatgactaaaataacccatgtgtcatggcaaagtgatgagtttttctcgtgaggtctggggctttccaaaaaggtataattcagacca 19232004  T
Q  118 atcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtctac 207  Q
    | || |||||| ||| |||||||||||| ||  ||| ||||||||||| |  |||||||  |||||||||||| || ||||||| |||||    
T  19232003 aacagacaccggatgcaaaatatgcaccgttccgactgaacctttcttacacaccacttcatcttcgattcgtactactagcttatctac 19231914  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 1954187 - 1954071
Alignment:
Q  91 ctttccgaaaaggtataatttgggtcaatcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgt 190  Q
    |||||||||||||||||||| ||||||| |  ||| || ||| |||||  ||||| ||  ||   |||||||||||||  ||||||  || |||||||||    
T  1954187 ctttccgaaaaggtataattcgggtcaaaccgacatcggatgcaaaatcagcaccgttccgattcaacctttcttgcgcgccacttcttcctcgattcgt 1954088  T
Q  191 gctgctagcttgtctac 207  Q
    |||||||||||||||||    
T  1954087 gctgctagcttgtctac 1954071  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 25857497 - 25857319
Alignment:
Q  23 gacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtataatttgggtcaatcac 122  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||| |||  || ||||||||||||||||||||  | |||| |      
T  25857497 gacctcgaatgactaaaataacccctacgtcatggcgaagcgatgtgttttgctcgtgaggtccgag-ctttccgaaaaggtataattcagatcaaacga 25857399  T
Q  123 acaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtctac 207  Q
    | || | ||| ||||| |||||| ||  ||| |||||||||||||| ||| ||| ||      ||||||||||||||||||||||    
T  25857398 atactggatgcaaaatttgcaccgttccgactgaacctttcttgcgcaccgcttcgt-----tttcgtgctgctagcttgtctac 25857319  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 20398719 - 20398886
Alignment:
Q  23 gacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtataatttgggtcaatcac 122  Q
    ||||||||||||||||| |||| | ||| ||||||| |||| ||| |||  | |||||| |||  ||  ||||||||||| |||||||  | ||||||      
T  20398719 gacctcgaatgactaaaataactcatacttcatggcaaagcgatgagttctgctcgtgaggtccaaggttttccgaaaagatataattctgatcaatctg 20398818  T
Q  123 acaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgt 190  Q
    |||||| ||| ||||| ||||| ||| |||| ||||||||||||||  |||||| |||||||||||||    
T  20398819 acaccggatgtaaaatctgcacaattctgactgaacctttcttgcgcgccacttcgtcttcgattcgt 20398886  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 39913540 - 39913711
Alignment:
Q  18 cagatgacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtataatttgggtca 117  Q
    |||| ||||||||||||||||| ||| || | | ||||||| |||  |||||||| | |||||| |||| |  |||||||||||||||||||||||||||    
T  39913540 cagacgacctcgaatgactaaaataaaccattcatcatggcaaagtgatgtgttttgctcgtgaggtctgacgctttccgaaaaggtataatttgggtca 39913639  T
Q  118 atcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcg 189  Q
    | |  ||| || ||||||||| |||| | || ||||  |||||||| ||||  |||||| ||||| ||||||    
T  39913640 aacggacatcggatgaaaaatttgcatcgttctgactaaacctttcatgcgcgccacttcgtctttgattcg 39913711  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 4580263 - 4580147
Alignment:
Q  91 ctttccgaaaaggtataatttgggtcaatcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgt 190  Q
    |||||||||||||||||||| |||||| ||  |||| | ||| |||||||||| ||||  ||  |||||||||||| |  |||||||||||||||||||     
T  4580263 ctttccgaaaaggtataattcgggtcattccgacactggatgcaaaatatgcatcattccgagtgaacctttcttgggccccactttgtcttcgattcgc 4580164  T
Q  191 gctgctagcttgtctac 207  Q
    ||| | |||||||||||    
T  4580163 gctaccagcttgtctac 4580147  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 33620390 - 33620491
Alignment:
Q  91 ctttccgaaaaggtataatttgggtcaatcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgt 190  Q
    |||||||||||| ||||||| |||||| ||  |||||| ||| ||||||| |||||||  ||  ||||||||||||||   ||||| ||||||||| |||    
T  33620390 ctttccgaaaagatataattcgggtcattccgacaccggatgtaaaatatacaccattccgagtgaacctttcttgcgcgtcacttcgtcttcgatccgt 33620489  T
Q  191 gc 192  Q
    ||    
T  33620490 gc 33620491  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 40594111 - 40594227
Alignment:
Q  91 ctttccgaaaaggtataatttgggtcaatcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgt 190  Q
    |||||||||| ||||||||| ||||||| |  |||||| ||| ||||| |||||| ||  ||| |||||||||||| || || |||  || |||||||||    
T  40594111 ctttccgaaatggtataattcgggtcaaacggacaccggatgcaaaatctgcaccgttccgactgaacctttcttgtgtgccgcttcttcctcgattcgt 40594210  T
Q  191 gctgctagcttgtctac 207  Q
    |||   |||||||||||    
T  40594211 gctttcagcttgtctac 40594227  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 25340390 - 25340479
Alignment:
Q  18 cagatgacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtata 107  Q
    ||||||||  |||||||||||| | | |||||||||||||| ||| |||| |||  | |||||| ||||  | |||||||||||||||||    
T  25340390 cagatgactccgaatgactaaatttatccctacgtcatggcaaagtaatgggttatgctcgtgaggtctggggctttccgaaaaggtata 25340479  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 42071632 - 42071821
Alignment:
Q  18 cagatgacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtataatttgggtca 117  Q
    |||| ||||||||||||||||| |||||||||| ||||||| |||| ||| |||| | ||| || |||   |||||| |||||||||| |||| || |||    
T  42071632 cagacgacctcgaatgactaaaataacccctacatcatggcaaagcgatgagttttgctcgcgaggtccgggacttttcgaaaaggtacaattcggatca 42071731  T
Q  118 atcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtctac 207  Q
    | |  ||||||  |  ||||| | |||| |||  ||  |||||||||| |||||||||| |||||||||| ||||| ||||||| |||||    
T  42071732 aacggacaccgggtacaaaatctacaccgtttcaactaaacctttcttacgtaccacttcgtcttcgattggtgctactagcttttctac 42071821  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 12486550 - 12486729
Alignment:
Q  27 tcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaag-tcttagactttccgaaaaggtataatttgggtcaatcacaca 125  Q
    |||||||| |||| ||||||||||||||||||||||| ||  |||| |||||||| | ||  || ||||  |||||||||| ||| ||||||| || |||    
T  12486550 tcgaatgaataaaataacccctacgtcatggcgaagcgataagttttgatcgtgacgatcagag-ctttttgaaaaggtat-attcgggtcaaacagaca 12486647  T
Q  126 ccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtctac 207  Q
    ||  ||| ||||| |||||| ||  |||  |||||||||||||  ||||||  || | ||||||||||||||||||||||||    
T  12486648 ccagatgcaaaatctgcaccgttccgactaaacctttcttgcgcgccacttcttccttgattcgtgctgctagcttgtctac 12486729  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 49043804 - 49043646
Alignment:
Q  18 cagatgacctcgaatgactaaactaacccctacgtcatggcgaagcaatgtgtttagatcgtgaagtcttagactttccgaaaaggtataatttgggtca 117  Q
    |||| |||||| |||||||||| | | |||||| |||||  ||||| ||| |||| | ||||||  ||  |  |||||||||||||||||||| ||||||    
T  49043804 cagacgacctcaaatgactaaattcatccctacttcatgatgaagcgatgagttttgctcgtgagatccgatgctttccgaaaaggtataattcgggtca 49043705  T
Q  118 atcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactt 176  Q
     ||  |||||| ||| ||||| ||||||||| |||  ||||||||||||| | ||||||    
T  49043704 ttctaacaccggatgcaaaatttgcaccattctgaatgaacctttcttgcatgccactt 49043646  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 8781175 - 8781102
Alignment:
Q  134 aaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtctac 207  Q
    ||||| |||||| || |||| ||||||||||||||  |||||| ||||| |||| |||||||||||||||||||    
T  8781175 aaaatctgcaccgttctgactgaacctttcttgcgcgccacttcgtctttgatttgtgctgctagcttgtctac 8781102  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 2053315 - 2053429
Alignment:
Q  95 ccgaaaaggtataatttgggtcaatcacacaccgaatgaaaaatatgcaccatttt--gacggaacctttcttgcgtaccactttgtcttcgattcgtgc 192  Q
    |||||||||||||||| |||||| ||  ||||| |||| ||||| ||||| |||||  ||| |||||||||||| | |||||   |||||| |||||||     
T  2053315 ccgaaaaggtataattcgggtcagtcggacaccaaatgcaaaatttgcactattttccgaccgaacctttcttgtgcaccacgccgtcttcaattcgtgt 2053414  T
Q  193 tgctagcttgtctac 207  Q
    ||| | |||||||||    
T  2053415 tgccatcttgtctac 2053429  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 4361147 - 4361220
Alignment:
Q  134 aaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtctac 207  Q
    ||||| ||||| |||  ||| ||| ||||||||||  |||||| |||||||||||||||||| ||||| |||||    
T  4361147 aaaatctgcactattccgactgaatctttcttgcgcgccacttcgtcttcgattcgtgctgccagcttatctac 4361220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 5678589 - 5678702
Alignment:
Q  91 ctttccgaaaaggtataatttgggtcaatcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgt 190  Q
    ||||| |||||||||||||| |||||||||  |||| ||||| ||||| ||| || ||  |||  || ||||||| ||| |||||| |||||| |||  |    
T  5678589 ctttctgaaaaggtataattcgggtcaatcggacacggaatgcaaaatctgccccgttccgactaaatctttcttacgtgccacttcgtcttcaatttat 5678688  T
Q  191 gctgctagcttgtc 204  Q
    ||| ||||||||||    
T  5678689 gcttctagcttgtc 5678702  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 5703641 - 5703754
Alignment:
Q  91 ctttccgaaaaggtataatttgggtcaatcacacaccgaatgaaaaatatgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgt 190  Q
    ||||| |||||||||||||| |||||||||  |||| ||||| ||||| ||| || ||  |||  || ||||||| ||| |||||| |||||| |||  |    
T  5703641 ctttctgaaaaggtataattcgggtcaatcggacacggaatgcaaaatctgccccgttccgactaaatctttcttacgtgccacttcgtcttcaatttat 5703740  T
Q  191 gctgctagcttgtc 204  Q
    ||| ||||||||||    
T  5703741 gcttctagcttgtc 5703754  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 19677563 - 19677627
Alignment:
Q  140 tgcaccattttgacggaacctttcttgcgtaccactttgtcttcgattcgtgctgctagcttgtc 204  Q
    |||||| || |||| ||| ||||||||||  ||||||| |||||||||||  |||||||||||||    
T  19677563 tgcaccgttctgactgaaactttcttgcgcgccactttatcttcgattcgcactgctagcttgtc 19677627  T

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