View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7221_high_7 (Length: 351)

Name: NF7221_high_7
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7221_high_7
NF7221_high_7
[»] chr2 (17 HSPs)
chr2 (4-337)||(32032780-32033113)
chr2 (116-320)||(7700257-7700460)
chr2 (201-320)||(34190029-34190148)
chr2 (148-325)||(18703637-18703803)
chr2 (116-231)||(11562083-11562195)
chr2 (232-323)||(3357071-3357161)
chr2 (123-321)||(34878622-34878821)
chr2 (219-318)||(4075463-4075562)
chr2 (137-267)||(38417728-38417859)
chr2 (129-208)||(16639293-16639372)
chr2 (129-320)||(27447688-27447879)
chr2 (245-319)||(10498674-10498748)
chr2 (180-221)||(37623587-37623628)
chr2 (244-309)||(41009732-41009797)
chr2 (117-173)||(6141382-6141438)
chr2 (245-317)||(16644007-16644079)
chr2 (245-317)||(43798200-43798272)
[»] chr3 (27 HSPs)
chr3 (123-320)||(24309801-24309998)
chr3 (117-323)||(36475386-36475592)
chr3 (117-330)||(26285795-26286011)
chr3 (121-333)||(23778178-23778395)
chr3 (117-330)||(7856415-7856631)
chr3 (209-330)||(38572987-38573108)
chr3 (119-231)||(25032174-25032286)
chr3 (122-316)||(30136508-30136700)
chr3 (122-316)||(30142637-30142829)
chr3 (122-316)||(30146059-30146251)
chr3 (201-299)||(52308856-52308954)
chr3 (179-275)||(36478212-36478308)
chr3 (242-321)||(4137253-4137332)
chr3 (219-318)||(25070704-25070803)
chr3 (219-318)||(36617770-36617869)
chr3 (180-274)||(395924-396019)
chr3 (219-318)||(26903171-26903270)
chr3 (242-309)||(36478039-36478106)
chr3 (246-319)||(25735219-25735292)
chr3 (246-319)||(25203050-25203123)
chr3 (240-296)||(35502475-35502531)
chr3 (180-267)||(6714405-6714492)
chr3 (278-317)||(6714169-6714208)
chr3 (244-315)||(49907002-49907073)
chr3 (118-196)||(19832034-19832112)
chr3 (225-282)||(23794964-23795021)
chr3 (6-39)||(51663767-51663800)
[»] chr8 (25 HSPs)
chr8 (117-319)||(44873204-44873406)
chr8 (117-321)||(7681346-7681550)
chr8 (120-330)||(29866084-29866297)
chr8 (122-333)||(32161364-32161573)
chr8 (143-317)||(10381366-10381540)
chr8 (168-320)||(29841151-29841304)
chr8 (180-330)||(24556878-24557028)
chr8 (228-322)||(6802742-6802836)
chr8 (219-318)||(45486188-45486287)
chr8 (179-313)||(43421492-43421629)
chr8 (180-330)||(7388102-7388253)
chr8 (201-272)||(34696984-34697055)
chr8 (124-222)||(6978413-6978511)
chr8 (201-298)||(11993677-11993774)
chr8 (228-325)||(43421639-43421735)
chr8 (242-321)||(31235832-31235911)
chr8 (116-178)||(34697087-34697149)
chr8 (202-254)||(35990862-35990914)
chr8 (180-314)||(2148366-2148500)
chr8 (242-319)||(72613-72690)
chr8 (241-321)||(33235596-33235676)
chr8 (244-319)||(37044374-37044449)
chr8 (219-285)||(11463188-11463254)
chr8 (242-319)||(16863289-16863365)
chr8 (122-182)||(11995259-11995319)
[»] chr5 (19 HSPs)
chr5 (116-330)||(36744854-36745071)
chr5 (125-333)||(43144488-43144698)
chr5 (117-330)||(26459611-26459822)
chr5 (140-323)||(34751058-34751241)
chr5 (120-330)||(25818997-25819211)
chr5 (201-320)||(7607245-7607364)
chr5 (118-317)||(5069761-5069964)
chr5 (142-296)||(5568956-5569111)
chr5 (148-274)||(33824763-33824890)
chr5 (117-206)||(22536877-22536966)
chr5 (117-231)||(36633907-36634023)
chr5 (219-318)||(17076605-17076706)
chr5 (180-259)||(39509140-39509220)
chr5 (151-320)||(980134-980302)
chr5 (244-319)||(18475949-18476024)
chr5 (244-319)||(29670020-29670095)
chr5 (244-302)||(32868374-32868432)
chr5 (117-182)||(7607392-7607457)
chr5 (244-319)||(11079877-11079952)
[»] chr4 (21 HSPs)
chr4 (168-330)||(2158600-2158762)
chr4 (119-331)||(2813910-2814122)
chr4 (117-274)||(4377155-4377312)
chr4 (119-274)||(36247748-36247904)
chr4 (117-274)||(33517948-33518106)
chr4 (182-320)||(1111982-1112121)
chr4 (239-330)||(33518114-33518207)
chr4 (239-323)||(25023213-25023296)
chr4 (179-231)||(50723219-50723271)
chr4 (240-330)||(36247913-36248004)
chr4 (129-251)||(52849789-52849903)
chr4 (253-330)||(4377333-4377413)
chr4 (245-319)||(53840452-53840526)
chr4 (242-319)||(13216541-13216618)
chr4 (244-319)||(14272444-14272519)
chr4 (244-319)||(20526586-20526661)
chr4 (244-319)||(45538208-45538283)
chr4 (117-196)||(51070315-51070394)
chr4 (180-221)||(30804383-30804424)
chr4 (242-319)||(35765262-35765339)
chr4 (180-221)||(46671920-46671961)
[»] chr1 (20 HSPs)
chr1 (167-325)||(8064949-8065107)
chr1 (117-323)||(27464239-27464445)
chr1 (169-333)||(9539584-9539748)
chr1 (162-274)||(10781247-10781359)
chr1 (240-330)||(10781142-10781234)
chr1 (137-218)||(23347795-23347876)
chr1 (219-318)||(1016998-1017097)
chr1 (148-209)||(34912305-34912366)
chr1 (244-313)||(23353434-23353503)
chr1 (245-312)||(34912362-34912428)
chr1 (117-196)||(43909373-43909452)
chr1 (119-196)||(9516763-9516840)
chr1 (246-319)||(10160147-10160220)
chr1 (117-185)||(9539762-9539830)
chr1 (240-319)||(14230092-14230171)
chr1 (185-274)||(1405936-1406026)
chr1 (263-316)||(9370705-9370758)
chr1 (180-221)||(29703075-29703116)
chr1 (244-321)||(45867632-45867709)
chr1 (120-196)||(281144-281219)
[»] chr7 (29 HSPs)
chr7 (118-330)||(33941610-33941814)
chr7 (146-330)||(30074602-30074788)
chr7 (164-309)||(46090190-46090335)
chr7 (182-321)||(2945378-2945519)
chr7 (201-330)||(24658426-24658554)
chr7 (168-330)||(25232916-25233079)
chr7 (117-274)||(32221865-32222025)
chr7 (185-324)||(39785484-39785624)
chr7 (179-319)||(27080399-27080536)
chr7 (179-319)||(27197765-27197902)
chr7 (201-330)||(38300348-38300481)
chr7 (151-274)||(34346837-34346960)
chr7 (214-320)||(1691663-1691769)
chr7 (219-318)||(39780991-39781090)
chr7 (219-318)||(43265927-43266026)
chr7 (139-209)||(49143946-49144016)
chr7 (183-267)||(26824474-26824559)
chr7 (179-310)||(36906243-36906370)
chr7 (179-315)||(26787257-26787394)
chr7 (210-330)||(40716887-40717008)
chr7 (241-325)||(10512031-10512115)
chr7 (117-196)||(7899403-7899482)
chr7 (182-251)||(16841044-16841114)
chr7 (119-196)||(26050085-26050162)
chr7 (117-190)||(2945846-2945916)
chr7 (244-306)||(6051154-6051216)
chr7 (244-317)||(5467448-5467521)
chr7 (123-196)||(26059448-26059521)
chr7 (180-221)||(33255023-33255064)
[»] scaffold0002 (1 HSPs)
scaffold0002 (157-324)||(461307-461474)
[»] chr6 (19 HSPs)
chr6 (148-289)||(16461644-16461785)
chr6 (164-309)||(6689174-6689316)
chr6 (201-333)||(21883260-21883392)
chr6 (125-231)||(2919958-2920062)
chr6 (199-317)||(14607750-14607867)
chr6 (180-303)||(30702677-30702801)
chr6 (225-318)||(24901708-24901801)
chr6 (122-296)||(1975260-1975435)
chr6 (219-318)||(18816933-18817032)
chr6 (180-330)||(30705275-30705420)
chr6 (201-288)||(33704117-33704205)
chr6 (262-319)||(14430023-14430080)
chr6 (192-265)||(8150815-8150889)
chr6 (207-252)||(35188058-35188103)
chr6 (118-173)||(14607871-14607926)
chr6 (179-217)||(19267059-19267097)
chr6 (116-174)||(35187957-35188015)
chr6 (271-319)||(6261825-6261873)
chr6 (269-321)||(11380013-11380065)
[»] scaffold0311 (1 HSPs)
scaffold0311 (179-330)||(817-964)
[»] scaffold0684 (1 HSPs)
scaffold0684 (253-320)||(4160-4227)
[»] scaffold0163 (1 HSPs)
scaffold0163 (253-320)||(3891-3958)


Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 4 - 337
Target Start/End: Original strand, 32032780 - 32033113
Alignment:
Q  4 ctggtttctcgcccgtacacgggttcgctgggttgcactcgtggagagtgattgtctatttagatagattagggcaggtttacctggtttatttttcact 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32032780 ctggtttctcgcccgtacacgggttcgctgggttgcactcgtggagagtgattgtctatttagatagattagggcaggtttacctggtttatttttcact 32032879  T
Q  104 atgtattcccgttaggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacat 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32032880 atgtattcccgttaggggcggatccagacttttggtacatgtgaggctaaatttttaaataaacaataatacaacctatattaaaaataagaaataacat 32032979  T
Q  204 tgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32032980 tgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttc 32033079  T
Q  304 tatataagttacaagacggtcaattagtcagtga 337  Q
    |||||||||||||||| |||||||||||||||||    
T  32033080 tatataagttacaagatggtcaattagtcagtga 32033113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 116 - 320
Target Start/End: Original strand, 7700257 - 7700460
Alignment:
Q  116 taggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaa 215  Q
    |||||||||||| | || |||| || ||||| ||||||| ||| ||| ||||||||||  || |||||| ||||||||||||||||||||||||||||||    
T  7700257 taggggcggatctacacatttgatatatgtgtggctaaaatttcaaagaaacaataatgtaaactatataaaaaataagaaataacattgtttgatacaa 7700356  T
Q  216 tacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttac 315  Q
    ||||||  |||||||||| || | ||| ||| |||| |||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  7700357 tacattgcaatgaaaatcatctcatattcatatgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacat-tctttctatataagttac 7700455  T
Q  316 aagac 320  Q
    |||||    
T  7700456 aagac 7700460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 34190029 - 34190148
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 300  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||  |||||||| |||| | ||||||||||| |||||||||||    
T  34190029 cattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgaactaaaatgatatcattgctaattgttaatagaacatctct 34190128  T
Q  301 ttctatataagttacaagac 320  Q
    ||||||||||||||||||||    
T  34190129 ttctatataagttacaagac 34190148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 325
Target Start/End: Complemental strand, 18703803 - 18703637
Alignment:
Q  148 ggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatt 247  Q
    ||||||| ||| ||| |||||||||| ||| |||||||||||||||       ||||||||||| ||||    || ||||||||| ||| ||||||||||    
T  18703803 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaataa-------cattgtttgatgcaat----tacaatgaaaattgtctcctatccatt 18703715  T
Q  248 tgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtca 325  Q
    |||||||||||||  ||||| | | || | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  18703714 tgttaaaaatgagcaaaaataaaaacattgctaattgttaaaagaacatctctttctaaataagttacaagacggtca 18703637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 11562083 - 11562195
Alignment:
Q  116 taggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaa 215  Q
    |||||||||||||||||||||| |||||||||||||| | ||| ||| |||||||||| ||   |||||||||||||||||||||||||||||||||||     
T  11562083 taggggcggatccagacttttgatacatgtgaggctagattttcaaagaaacaataatgca---tatattaaaaataagaaataacattgtttgatacag 11562179  T
Q  216 tacattagaatgaaaa 231  Q
    ||||||| || |||||    
T  11562180 tacattacaacgaaaa 11562195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 232 - 323
Target Start/End: Complemental strand, 3357161 - 3357071
Alignment:
Q  232 tcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggt 323  Q
    ||||| |||||||||||||| |||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  3357161 tcgtctcctatccatttgttgaaaatgagataaaatgacatcattgctaattgttaaaa-aacatctctttctatataagttacaagacggt 3357071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 123 - 321
Target Start/End: Complemental strand, 34878821 - 34878622
Alignment:
Q  123 ggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacatt-gtttgatacaatacatt 221  Q
    ||||| |||| ||||||| || || ||||||| ||||||| ||||||||||  |  ||||| |||||||||||||||| ||| ||||||||||||  |||    
T  34878821 ggatctagacatttggtatatatggggctaaaattttaaagaaacaataatgaagactatactaaaaataagaaataagatttgtttgatacaatgaatt 34878722  T
Q  222 agaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    | |||  ||||  |  | ||| |||||||| |||||||||||||| ||| ||| |  |||||||||||||||||| | ||||||||||||||||||||||    
T  34878721 acaatataaattctttcatattcatttgttgaaaatgagttaaaaagacgtcattgttaattgttaaaagaacatatatttctatataagttacaagacg 34878622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 4075463 - 4075562
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||||||  | ||| ||||||| |||||||| || ||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  4075463 attacaatgaaaatcgtctgccatcaatttgttgaaaatgagctagaataacatcagtactaattgtgaaaagaacatctctttcaataaaagttacaag 4075562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 137 - 267
Target Start/End: Original strand, 38417728 - 38417859
Alignment:
Q  137 ggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgt 235  Q
    |||| ||||| | ||||| ||||||| ||| | |||| ||| ||||||||||||||||||||||| ||| ||||| |||||| |||| | ||||||| ||    
T  38417728 ggtatatgtgtgcctaaaattttaaagaaaaactaatgcaagctatattaaaaataagaaataactttggttgatgcaatacaattacagtgaaaattgt 38417827  T
Q  236 cgcctatccatttgttaaaaatgagttaaaat 267  Q
    | |||||||||||||| ||||||| |||||||    
T  38417828 ctcctatccatttgttgaaaatgatttaaaat 38417859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 16639372 - 16639293
Alignment:
Q  129 agacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgttt 208  Q
    |||| ||||||| ||||  | ||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||    
T  16639372 agacatttggtatatgtatgactaaaattttaaagaaacaataatacaaactatattaaaaataagaaattacattgttt 16639293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 320
Target Start/End: Complemental strand, 27447879 - 27447688
Alignment:
Q  129 agacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-attagaatg 227  Q
    |||| |||| || ||||| ||||||| ||| ||| ||| |||||| ||   ||| ||||||||||||||||| ||||||||||  ||||| |||| ||||    
T  27447879 agacatttgatatatgtgtggctaaaatttcaaagaaaaaataatgcagattatgttaaaaataagaaataatattgtttgatgtaatacaattacaatg 27447780  T
Q  228 aaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagac 320  Q
    ||||| ||| | |||| |||| ||  ||| ||| |||||| |||  |   |||||| |||||||||||| ||| |||||||||| ||||||||    
T  27447779 aaaattgtctcatatctatttattggaaacgagctaaaataacaatatagctaatt-ttaaaagaacatttctctctatataagctacaagac 27447688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 10498748 - 10498674
Alignment:
Q  245 atttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    ||||||| |||||||  |||||| | |||| |||||||||||  ||||||||||||||||||||| ||| |||||    
T  10498748 atttgttgaaaatgaactaaaattatatcattactaattgttctaagaacatctctttctatataggttgcaaga 10498674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 37623628 - 37623587
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatacatt 221  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  37623628 tatactaaaaataataaataacattgtttgattcaatacatt 37623587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 41009797 - 41009732
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatata 309  Q
    |||||||| ||| ||||| ||||| |||||| | || ||||||  |||||||||||||||||||||    
T  41009797 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 41009732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 6141382 - 6141438
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataat 173  Q
    |||||| |||||||||||| ||||||||||  |||||| ||| ||||||| ||||||    
T  6141382 aggggcagatccagactttaggtacatgtggagctaaaatttcaaataaataataat 6141438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 16644079 - 16644007
Alignment:
Q  245 atttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaa 317  Q
    ||||||||||||| | ||||||| | |||| || ||||| ||  |||||||||||||| |||||| |||||||    
T  16644079 atttgttaaaaataaattaaaattatatcattattaatttttctaagaacatctctttttatataggttacaa 16644007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 43798200 - 43798272
Alignment:
Q  245 atttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaa 317  Q
    ||||||| ||||||| |||||||   |||| |||||||||||  ||||||||||||||  ||||| |||||||    
T  43798200 atttgttgaaaatgaattaaaattgaatcattactaattgttttaagaacatctctttacatatatgttacaa 43798272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 24309801 - 24309998
Alignment:
Q  123 ggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacatta 222  Q
    ||||||||||||| |||||||| || |||||| ||| ||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  24309801 ggatccagactttaggtacatgcgaagctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaatacatta 24309900  T
Q  223 gaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagac 320  Q
     ||||||||||||| |||||||||||||| ||||| ||| ||||| |||||| |  |||||||||||||||||||||||||||| |||||||||||||    
T  24309901 caatgaaaatcgtctcctatccatttgttgaaaataagtcaaaatcacatcattgttaattgttaaaagaacatctctttctatgtaagttacaagac 24309998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 323
Target Start/End: Original strand, 36475386 - 36475592
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    |||| |||||| ||| |||||||| ||||| || |||| ||| ||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  36475386 agggacggatctagatttttggtatatgtggggttaaaatttcaaagaaacaataacgcaaactatattaaaaataagaaataacattgtttgatacaat 36475485  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    ||| || ||||||||||||| || || |||||||||||||||||  |||||||||||| | ||||||||||||||||||||||||| |||||||||||||    
T  36475486 acactacaatgaaaatcgtctcccattcatttgttaaaaatgagcgaaaatgacatcattgctaattgttaaaagaacatctctttttatataagttaca 36475585  T
Q  317 agacggt 323  Q
    |||||||    
T  36475586 agacggt 36475592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 117 - 330
Target Start/End: Complemental strand, 26286011 - 26285795
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaa---caataatacaacctatattaaaaataagaaataacattgtttgatac 213  Q
    ||||||||||||||||||| | || ||||| |||| || ||| ||| |||   ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  26286011 aggggcggatccagactttagatatatgtggggcttaaatttcaaaaaaatagcaataatgcaaactatattaaaaataagaaataacattgtttgatac 26285912  T
Q  214 aatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagtt 313  Q
    ||||||||| ||||||||||||  |||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||| |||||||| ||| |||    
T  26285911 aatacattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaaggacatcattgctaattgttaaaagaacatatctttctacatatgtt 26285812  T
Q  314 acaagacggtcaattag 330  Q
    ||||||| |||| ||||    
T  26285811 acaagacagtcatttag 26285795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 121 - 333
Target Start/End: Original strand, 23778178 - 23778395
Alignment:
Q  121 gcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacat 220  Q
    ||||||||||||||||| || || ||| | |||| ||| ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23778178 gcggatccagacttttgatatatttgaagttaaattttcaaagaaaaaataatacaaactatattaaaaataagaaataacattgtttgatacaatacat 23778277  T
Q  221 taga-----atgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttac 315  Q
    || |     || ||||| ||| | |||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||    
T  23778278 tacattacaataaaaatggtctcttatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatataagtaac 23778377  T
Q  316 aagacggtcaattagtca 333  Q
    || ||||| | |||||||    
T  23778378 aaaacggttatttagtca 23778395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 117 - 330
Target Start/End: Original strand, 7856415 - 7856631
Alignment:
Q  117 aggggcggatccagacttttggtaca-tgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa--ataacattgtttgatac 213  Q
    |||||||||||| |||||| |||| | | ||  |||||| ||| ||| |||||||||| |||  |||||||||||||| ||  | || ||||||||||||    
T  7856415 aggggcggatccggactttaggtataatttggagctaaaatttcaaagaaacaataatgcaaattatattaaaaataaaaataaaaatattgtttgatac 7856514  T
Q  214 aatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagtt 313  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| ||| |  |||||||||||||||||||||||||||||||||||    
T  7856515 aatacattataataaaaatcgtctcctatccatttgttaaaaatgagctaaaatgacgtcattgttaattgttaaaagaacatctctttctatataagtt 7856614  T
Q  314 acaagacggtcaattag 330  Q
    ||||||| |||| ||||    
T  7856615 acaagacagtcatttag 7856631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 38572987 - 38573108
Alignment:
Q  209 gatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatat 308  Q
    |||||||| ||||| ||||||||||||| |||||||||||||| |||||||| |||||||||| || | ||||||||||| |||||||||||||||||||    
T  38572987 gatacaatgcattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgctaattgttaatagaacatctctttctatat 38573086  T
Q  309 aagttacaagacggtcaattag 330  Q
    |||||||| |||| ||| ||||    
T  38573087 aagttacacgacgatcatttag 38573108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 25032286 - 25032174
Alignment:
Q  119 gggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac 218  Q
    ||||||||| ||||||||| |||||||| ||||||| ||| |||  ||||||||| |||  || ||||||||||||||||||||||||||||||||||||    
T  25032286 gggcggatctagacttttgatacatgtggggctaaattttcaaaggaacaataatgcaaattacattaaaaataagaaataacattgtttgatacaatac 25032187  T
Q  219 attagaatgaaaa 231  Q
    |||| ||||||||    
T  25032186 attacaatgaaaa 25032174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 316
Target Start/End: Original strand, 30136508 - 30136700
Alignment:
Q  122 cggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-at 220  Q
    |||||| |||| || |||| ||||| | ||||| ||||||| ||| |||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||    
T  30136508 cggatctagacattcggtatatgtgtgactaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaat 30136606  T
Q  221 tagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |  ||||||||| ||| |||||||||||||| |||||| |  ||||| ||  |    |||||| |||||||||||| |||||||||||||||||||    
T  30136607 ttcaatgaaaatggtctcctatccatttgttgaaaatgcg--aaaataacggcgccgctaatttttaaaagaacatttctttctatataagttaca 30136700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 316
Target Start/End: Original strand, 30142637 - 30142829
Alignment:
Q  122 cggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-at 220  Q
    |||||| |||| || |||| ||||| | ||||| ||||||| ||| |||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||    
T  30142637 cggatctagacattcggtatatgtgtgactaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaat 30142735  T
Q  221 tagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |  ||||||||| ||| |||||||||||||| |||||| |  ||||| ||  |    |||||| |||||||||||| |||||||||||||||||||    
T  30142736 ttcaatgaaaatggtctcctatccatttgttgaaaatgcg--aaaataacggcgccgctaatttttaaaagaacatttctttctatataagttaca 30142829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 316
Target Start/End: Original strand, 30146059 - 30146251
Alignment:
Q  122 cggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-at 220  Q
    |||||| |||| || |||| ||||| | ||||| ||||||| ||| |||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||    
T  30146059 cggatctagacattcggtatatgtgtgactaaaattttaaaaaaa-aataatgcaaacaatatgaaaaataagaaataacattgtttgatacaatacaat 30146157  T
Q  221 tagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |  ||||||||| ||| |||||||||||||| |||||| |  ||||| ||  |    |||||| |||||||||||| |||||||||||||||||||    
T  30146158 ttcaatgaaaatggtctcctatccatttgttgaaaatgcg--aaaataacggcgccgctaatttttaaaagaacatttctttctatataagttaca 30146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 52308954 - 52308856
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctc 299  Q
    |||||||||||||| ||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||||| |  |||||||||| ||||||||||    
T  52308954 cattgtttgatacactacattacaatgaaaatcatctcctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatctc 52308856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 36478308 - 36478212
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcag 275  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||| |||    ||||||||||| |||||||||||||||||||||||    
T  36478308 ctatattaaaaataagaaataatattgtttgatacaatacgttacaattaaaattgtctttgatccatttgttgaaaatgagttaaaatgacatcag 36478212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 4137332 - 4137253
Alignment:
Q  242 tccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    |||||||||| |||||||||||||||||||||  |||||||||||  ||||||||||||| ||||||| |||||||||||    
T  4137332 tccatttgttgaaaatgagttaaaatgacatcgttactaattgttctaagaacatctcttactatatatgttacaagacg 4137253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 25070803 - 25070704
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||||||  | ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  25070803 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 25070704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 36617869 - 36617770
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||||||  | ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  36617869 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 36617770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 396019 - 395924
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatca 274  Q
    |||| ||||||||||||||||||||||||||||||||||| |||  |||||||| |||  | ||||||||||| |||||||| |||||| ||||||    
T  396019 tatactaaaaataagaaataacattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataacatca 395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 26903171 - 26903270
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||||||    ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  26903171 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 26903270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 36478106 - 36478039
Alignment:
Q  242 tccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatata 309  Q
    ||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  36478106 tccatttcttgaaaatgagctaaaatgacatcattactaattgttaaaagaacatctttttctatata 36478039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 25735219 - 25735292
Alignment:
Q  246 tttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||| ||||||| ||||||| | |||| |||||||| || ||||||||||||||||||||||||||||||||    
T  25735219 tttgttgaaaatgaattaaaattatatcattactaattattcaaagaacatctctttctatataagttacaaga 25735292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 25203123 - 25203050
Alignment:
Q  246 tttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||| |||||||  |||||| | |||| |||||||| ||  |||||||||||||||||||||||||||||||    
T  25203123 tttgttgaaaatgaactaaaattatatcattactaattattctaagaacatctctttctatataagttacaaga 25203050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 35502531 - 35502475
Alignment:
Q  240 tatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacat 296  Q
    |||||||||||||||||||||||||||| ||| || | |||||| ||||||||||||    
T  35502531 tatccatttgttaaaaatgagttaaaataacagcattgctaatttttaaaagaacat 35502475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 6714492 - 6714405
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaat 267  Q
    ||||||||||||||||||||||| | ||||||  ||||| |||| ||||||||| ||| | |||| ||||||| ||||||| |||||||    
T  6714492 tatattaaaaataagaaataaca-tatttgatgtaatacaattacaatgaaaattgtctcatatctatttgttgaaaatgaattaaaat 6714405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 317
Target Start/End: Complemental strand, 6714208 - 6714169
Alignment:
Q  278 ctaattgttaaaagaacatctctttctatataagttacaa 317  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  6714208 ctaattgttaaaagaatatctctttctataaaagttacaa 6714169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 49907073 - 49907002
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttac 315  Q
    |||||||  |||||||  |||||| | |||| |||||||||||  ||||||||||||||||||||| |||||    
T  49907073 catttgtagaaaatgaaataaaattatatcattactaattgttctaagaacatctctttctatataggttac 49907002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 19832112 - 19832034
Alignment:
Q  118 ggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    ||||||||||||||| ||  | | | ||||||||||| |||| || |||||||||| |||  |||||||||||||||||    
T  19832112 ggggcggatccagacattaaggataagtgaggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 19832034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 23794964 - 23795021
Alignment:
Q  225 atgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaat 282  Q
    |||||||||||| | |||||||||||| |||||||| ||||| ||||| | |||||||    
T  23794964 atgaaaatcgtctcttatccatttgttgaaaatgagctaaaaagacattattactaat 23795021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 51663800 - 51663767
Alignment:
Q  6 ggtttctcgcccgtacacgggttcgctgggttgc 39  Q
    |||||||||||||||| |||||||||||||||||    
T  51663800 ggtttctcgcccgtacgcgggttcgctgggttgc 51663767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 319
Target Start/End: Original strand, 44873204 - 44873406
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    |||||||||| |||||||| |||||||| |  |||||| ||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  44873204 aggggcggattcagactttaggtacatgcggagctaaaattttaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaat 44873303  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |||||| |||||||||||||  ||||||||||||| ||||||||||||||| |||| | | ||||||||||||||||||||| |||||||  ||||||||    
T  44873304 acattacaatgaaaatcgtcttctatccatttgttgaaaatgagttaaaataacatgattgctaattgttaaaagaacatctttttctatgcaagttaca 44873403  T
Q  317 aga 319  Q
    |||    
T  44873404 aga 44873406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 117 - 321
Target Start/End: Complemental strand, 7681550 - 7681346
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    ||||||||||| |||| ||||||| ||||| || |||| ||| ||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7681550 aggggcggatctagacatttggtatatgtgtggttaaaatttcaaagaaataataatacaaactatattaaaaacaagaaataacattgtttgatacaat 7681451  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    | |||| ||||||||||||  |||||||||||||| ||||||   ||||||||||||| | ||||||||||||||||||| ||||||||||||||||| |    
T  7681450 atattacaatgaaaatcgtttcctatccatttgttgaaaatgttctaaaatgacatcattgctaattgttaaaagaacatatctttctatataagttata 7681351  T
Q  317 agacg 321  Q
    |||||    
T  7681350 agacg 7681346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 120 - 330
Target Start/End: Original strand, 29866084 - 29866297
Alignment:
Q  120 ggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaataca 219  Q
    ||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||| ||| |||||||| ||||||||||||| ||||||||||||||||||    
T  29866084 ggcggatccagacttttggtatatgtggggctaaacttttaaagaaaaaataatgcaaactatattataaataagaaataatattgtttgatacaataca 29866183  T
Q  220 ttagaatgaaaa--tcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatc-tctttctatataagttaca 316  Q
    ||| ||||||||  || || || ||||||||||| |||||||| ||||||||||||| || ||||| ||||||||||||| | ||||| |||| ||||||    
T  29866184 ttacaatgaaaatttcatctccgatccatttgttgaaaatgagctaaaatgacatcattattaatttttaaaagaacatcttttttctgtatatgttaca 29866283  T
Q  317 agacggtcaattag 330  Q
    ||||||||| ||||    
T  29866284 agacggtcatttag 29866297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 333
Target Start/End: Complemental strand, 32161573 - 32161364
Alignment:
Q  122 cggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacatt 221  Q
    |||||| |||| |||| |||||||| ||||||| ||||  | ||| |||||| |||  ||||||||||||||||||||||||||||||||||||||||||    
T  32161573 cggatctagacatttgatacatgtggggctaaaattttggagaaaaaataatgcaaattatattaaaaataagaaataacattgtttgatacaatacatt 32161474  T
Q  222 agaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    | ||  ||||||||| | ||||  |||||| |||||||| |||||| |||||| |||||| |||||||||||||||||||| |||| ||||||||||||     
T  32161473 ataactaaaatcgtctcatatc--tttgttgaaaatgagataaaataacatcaatactaaatgttaaaagaacatctctttttatacaagttacaagaca 32161376  T
Q  322 gtcaattagtca 333  Q
    |||| |||||||    
T  32161375 gtcatttagtca 32161364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 317
Target Start/End: Original strand, 10381366 - 10381540
Alignment:
Q  143 tgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctat 242  Q
    |||||||||||| ||| ||| ||||||||||  || |||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||| ||| | |||    
T  10381366 tgtgaggctaaaatttcaaagaaacaataatgtaaactatattaaaaataagaagtaacattgtttgatataatacattacaatcaaaattgtctcttat 10381465  T
Q  243 ccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaa 317  Q
    | ||||||| |||||||  ||||||||||||| |  |||||||||||| ||||||| ||| ||||||||||||||    
T  10381466 ctatttgttgaaaatgaactaaaatgacatcattgttaattgttaaaataacatctgtttatatataagttacaa 10381540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 168 - 320
Target Start/End: Complemental strand, 29841304 - 29841151
Alignment:
Q  168 aataatacaacctatattaaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaa 266  Q
    |||||| ||| |||||| ||||||||||||||||||||||||||| |||| | ||| ||||||||| ||| | |||| ||||||| |||||| |||||||    
T  29841304 aataatgcaaactatataaaaaataagaaataacattgtttgatataatataattataatgaaaattgtctcatatctatttgttgaaaatgggttaaaa 29841205  T
Q  267 tgacatcagtactaattgttaaaagaacatctctttctatataagttacaagac 320  Q
    | ||| | || |||||| |||||||||||| |||||||||||||||||||||||    
T  29841204 taacaacggtgctaatttttaaaagaacatatctttctatataagttacaagac 29841151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 180 - 330
Target Start/End: Complemental strand, 24557028 - 24556878
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtact 279  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||    ||||||||||||| |||||||  |||| || ||| | | ||    
T  24557028 tatattaaaaataataaataacattgtttgatacaatacattacaatgaaaatcgatttctatccatttgttgaaaatgaagtaaattgtcattattgct 24556929  T
Q  280 aattgttaaaagaacatctctttctatataagttacaagacggtcaattag 330  Q
    |||||||||||||| |  | ||| |||||||||||||||||||||| ||||    
T  24556928 aattgttaaaagaaaacttttttatatataagttacaagacggtcatttag 24556878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 6802836 - 6802742
Alignment:
Q  228 aaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacgg 322  Q
    ||||| ||| ||||| ||||||||||||||||  ||||||||| ||| | ||||||||||||| ||||||||||| |||||||||||||||||||    
T  6802836 aaaattgtctcctattcatttgttaaaaatgaagtaaaatgacttcattgctaattgttaaaataacatctctttttatataagttacaagacgg 6802742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 45486287 - 45486188
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||||||  | ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  45486287 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 45486188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 313
Target Start/End: Original strand, 43421492 - 43421629
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagta 277  Q
    |||||||||||||||| |||||||||||||||| |||||| |||| ||| |||||||||  ||||| ||||||| |||||||  |||||| ||| || ||    
T  43421492 ctatattaaaaataagtaataacattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaatgaactaaaattacaacatta 43421591  T
Q  278 --ctaattgttaaaagaacatctctttctatataagtt 313  Q
      |||||||||||||||||||  |||  ||||||||||    
T  43421592 ctctaattgttaaaagaacattacttcttatataagtt 43421629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 330
Target Start/End: Complemental strand, 7388253 - 7388102
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtac 278  Q
    ||||||||||||||||| ||||||||||||||  |||||| ||| ||| ||||| |||  || |||| ||||| |||| | | |||||| | | || | |    
T  7388253 tatattaaaaataagaattaacattgtttgatgtaatacaattacaataaaaattgtcttctttccaattgttgaaaacgtgctaaaataaaaacattgc 7388154  T
Q  279 taattgttaaaagaacatctctttctatataagttacaagacggtcaattag 330  Q
    ||||| |||||| ||||| | |||||||||||||||||||||||||| ||||    
T  7388153 taatttttaaaaaaacatttatttctatataagttacaagacggtcatttag 7388102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 34697055 - 34696984
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacat 272  Q
    ||||||||||||||||| |||| ||||||||||||| | |||||||||||| |||||||| |||||||||||    
T  34697055 cattgtttgatacaatatattacaatgaaaatcgtctcatatccatttgttgaaaatgagataaaatgacat 34696984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 6978511 - 6978413
Alignment:
Q  124 gatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacatta 222  Q
    ||||||| |||||| || ||||| ||||||| ||| ||| ||||| ||||  || |||||||||||||||||||||| ||||||||||| |||||||||    
T  6978511 gatccagtcttttgatatatgtggggctaaattttcaaagaaacagtaatgtaaactatattaaaaataagaaataatattgtttgatataatacatta 6978413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 11993774 - 11993677
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatct 298  Q
    |||||||||||||| ||||||| ||||||| || || ||||| |||||||| |||||||| ||||||||||||| |  |||||||||| || ||||||    
T  11993774 cattgtttgatacactacattacaatgaaagtcatctcctatacatttgttgaaaatgagctaaaatgacatcattgttaattgttaataggacatct 11993677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 43421639 - 43421735
Alignment:
Q  228 aaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtca 325  Q
    ||||||||| |||||||||||||||||| |||  ||||||||||  | |||| ||||||||||||| ||  |||| ||||||||||||||||||||||    
T  43421639 aaaatcgtctcctatccatttgttaaaa-tgaactaaaatgacaatattactgattgttaaaagaatattactttttatataagttacaagacggtca 43421735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 31235911 - 31235832
Alignment:
Q  242 tccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    |||||||||| |||||||| |||||| |||||| |||||||||||  |||||||||||| ||||| || |||||||||||    
T  31235911 tccatttgttgaaaatgagctaaaattacatcattactaattgtttcaagaacatctctctctatgtacgttacaagacg 31235832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 34697149 - 34697087
Alignment:
Q  116 taggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaac 178  Q
    |||||||||||||||||||| ||||||||||  |||||| ||||||||||| |||| ||||||    
T  34697149 taggggcggatccagactttaggtacatgtggagctaaaattttaaataaataatagtacaac 34697087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 35990914 - 35990862
Alignment:
Q  202 attgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaa 254  Q
    ||||||||||||||||||| | ||||||||||||| |||||| ||||||||||    
T  35990914 attgtttgatacaatacataacaatgaaaatcgtctcctatctatttgttaaa 35990862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 314
Target Start/End: Original strand, 2148366 - 2148500
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtac 278  Q
    |||| ||||||||||||||||||||| ||||| |||||| |||| |||||||||  ||   ||| |||||||| |||| ||  ||||||  ||||| | |    
T  2148366 tatactaaaaataagaaataacattgattgatgcaatacaattacaatgaaaataatctattatacatttgttgaaaacgaactaaaatagcatcattgc 2148465  T
Q  279 taattgttaaaagaacatctctttctatataagtta 314  Q
    ||||| ||||||||||  || |||||||||||||||    
T  2148466 taatttttaaaagaacgcct-tttctatataagtta 2148500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 72613 - 72690
Alignment:
Q  242 tccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||||| |||||||  |||||| | |||| |||||||| ||  ||||| ||||||||||||||| |||||||||    
T  72613 tccatttgttgaaaatgaagtaaaatcatatcattactaatttttctaagaatatctctttctatataggttacaaga 72690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 33235596 - 33235676
Alignment:
Q  241 atccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    ||||||||||| |||||||| |||||| ||| || | ||||||| |  || |||||||||||||||| |||||||| ||||    
T  33235596 atccatttgttgaaaatgagctaaaataacaccattgctaattggttcaaaaacatctctttctataaaagttacacgacg 33235676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 37044449 - 37044374
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||| |||||||  ||| || |||||| |||||| ||||  ||||||||||||||| ||||| |||||||||    
T  37044449 catttgttgaaaatgaactaatattacatcattactaactgttctaagaacatctctttcaatataggttacaaga 37044374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 11463188 - 11463254
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgt 285  Q
    |||| |||||||||||||  | ||||||||||| |||||||| || ||| |||||||| ||||||||    
T  11463188 attacaatgaaaatcgtctaccatccatttgttgaaaatgagctagaataacatcagtgctaattgt 11463254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 16863289 - 16863365
Alignment:
Q  242 tccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||||| ||||||| ||||||| |||||| | |||||||||  || || || |||||||||||| |||||||||    
T  16863289 tccatttgttgaaaatgaattaaaattacatcattgctaattgttccaataa-atatctttctatatatgttacaaga 16863365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 11995319 - 11995259
Alignment:
Q  122 cggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctat 182  Q
    |||||||| ||||| |||| |||||  |||||| ||||||||||| |||||||||| ||||    
T  11995319 cggatccaaactttaggtatatgtggagctaaaattttaaataaataataatacaaactat 11995259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 116 - 330
Target Start/End: Original strand, 36744854 - 36745071
Alignment:
Q  116 taggggcggatccagacttttggtacatgtgaggctaaac-ttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgataca 214  Q
    ||||| ||||| |||||||| ||||||||||  ||||||  ||||||| |||||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  36744854 tagggacggattcagactttaggtacatgtggagctaaaaattttaaagaaacaataatgcaaactatattaaaagtaagaaataatattgtttgataca 36744953  T
Q  215 atacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttc--tatataagt 312  Q
    ||| |||| ||| |||||||||   |||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||  |||||||||    
T  36744954 ataaattacaattaaaatcgtcttatatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatatataagt 36745053  T
Q  313 tacaagacggtcaattag 330  Q
    ||||||||||||| ||||    
T  36745054 tacaagacggtcatttag 36745071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 125 - 333
Target Start/End: Original strand, 43144488 - 43144698
Alignment:
Q  125 atccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattaga 224  Q
    |||||||||||||||| ||||| ||||||||||| ||| ||| ||| || ||| |||||||| ||||||||||||||||||||||||||||||||||| |    
T  43144488 atccagacttttggtatatgtggggctaaactttcaaaaaaaaaattatgcaaactatattataaataagaaataacattgtttgatacaatacattaca 43144587  T
Q  225 atgaaaa--tcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacgg 322  Q
    |||||||  || || || ||||||||||| |||||||| |||| |||||||  |  |||||||||||||||||||| |||||||||| |||||||||| |    
T  43144588 atgaaaatttcttctccaatccatttgttgaaaatgagctaaagtgacatctttgttaattgttaaaagaacatctttttctatatatgttacaagacag 43144687  T
Q  323 tcaattagtca 333  Q
    ||| |||||||    
T  43144688 tcatttagtca 43144698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 117 - 330
Target Start/End: Original strand, 26459611 - 26459822
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    |||| |||||| ||||||| |||||||||   |||||| ||| ||| ||||||| || ||| | ||||||||||||||||| ||||||||||||||||||    
T  26459611 agggacggatcgagactttaggtacatgttgagctaaaatttcaaagaaacaattatgcaaaccatattaaaaataagaaagaacattgtttgatacaat 26459710  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |||||| ||||||||||||  |||||||||||||| |||||||| |||||||| | |  |||||||||||||| ||| |||||||| |||||||||||||    
T  26459711 acattacaatgaaaatcgtgtcctatccatttgttgaaaatgagctaaaatgagagc--tactaattgttaaaggaatatctctttatatataagttaca 26459808  T
Q  317 agacggtcaattag 330  Q
    |||| |||| ||||    
T  26459809 agacagtcatttag 26459822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 140 - 323
Target Start/End: Complemental strand, 34751241 - 34751058
Alignment:
Q  140 acatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcc 239  Q
    ||||||| ||||||| ||| ||| |||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || |     
T  34751241 acatgtggggctaaaatttcaaagaaacaataatgcaaattatattaaaaataagaagtaacattgtttgatacaatacattaaaatgaaaatcatctcg 34751142  T
Q  240 tatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggt 323  Q
    | || ||||||| |||||||| ||||||||||||| | |||||||||||||  |||||||||| |||||||||||||| |||||    
T  34751141 tgtctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaattacatctctttatatataagttacaaaacggt 34751058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 120 - 330
Target Start/End: Original strand, 25818997 - 25819211
Alignment:
Q  120 ggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaata--atacaacctatattaaaaataagaaataacattgtttgatacaata 217  Q
    |||||||| |||| ||||||||||||| ||||||| ||| ||| ||| ||||  ||  || |||||||||||||| ||||||||||||||||| ||||||    
T  25818997 ggcggatctagacatttggtacatgtggggctaaaatttcaaagaaaaaatataatgtaaactatattaaaaataggaaataacattgtttgaaacaata 25819096  T
Q  218 cattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaac--atctctttctatataagttac 315  Q
    |||||  |||||||| ||| |||||||||||||| ||||| || |||||| || | | ||||||  |||||||||||  |||| |||||| |||||||||    
T  25819097 cattacgatgaaaattgtctcctatccatttgttgaaaataagctaaaataactttattactaacagttaaaagaacatatctatttctacataagttac 25819196  T
Q  316 aagacggtcaattag 330  Q
    |||||||||| ||||    
T  25819197 aagacggtcatttag 25819211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 201 - 320
Target Start/End: Complemental strand, 7607364 - 7607245
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 300  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||||||| |||||||| ||||||||||||| |  |||||||||| |||||||||||    
T  7607364 cattgtttgatacaatacattacaataaaaatcgtcttctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatctct 7607265  T
Q  301 ttctatataagttacaagac 320  Q
    ||||||||||||||||||||    
T  7607264 ttctatataagttacaagac 7607245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 118 - 317
Target Start/End: Original strand, 5069761 - 5069964
Alignment:
Q  118 ggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatac---- 213  Q
    |||| ||||| |||| ||||||||||||| ||| |||  |||||| ||||||||||  || |||||||||||||||||| ||| ||||||||||||        
T  5069761 ggggtggatctagacatttggtacatgtggggcaaaaaatttaaagaaacaataatgtaaactatattaaaaataagaagtaatattgtttgatacaatt 5069860  T
Q  214 aatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagtt 313  Q
    ||||| ||| |||||||||| || | | || ||||||| ||||||||||||||||| |||| |  |||||||||||| ||||||||||| |||||| |||    
T  5069861 aatacgttacaatgaaaatcatctcatgtctatttgttgaaaatgagttaaaatgatatcattgttaattgttaaaataacatctctttatatataggtt 5069960  T
Q  314 acaa 317  Q
    ||||    
T  5069961 acaa 5069964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 5568956 - 5569111
Alignment:
Q  142 atgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcct 240  Q
    ||||| ||||||| ||| ||| ||| |||||| ||| ||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||| ||| | |    
T  5568956 atgtgtggctaaaatttaaaagaaaaaataatgcaaactatattaaaaataagaaataacattggttgatgcaatacaattacaatgaaaattgtctcgt 5569055  T
Q  241 atccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacat 296  Q
    ||||||||||| ||||||||||||||| ||| || | |||||| ||||||||||||    
T  5569056 atccatttgttgaaaatgagttaaaataacaacattgctaatttttaaaagaacat 5569111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 33824890 - 33824763
Alignment:
Q  148 ggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccat 246  Q
    ||||||| ||||||| |||||||||| |||  |||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||| ||||| |||    
T  33824890 ggctaaaattttaaagaaacaataatgcaaaatatattaaaaataagaaataacattgtttgatgcagtacaattacaatgaaaatcgtctcctattcat 33824791  T
Q  247 ttgttaaaaatgagttaaaatgacatca 274  Q
    ||||| ||||||||||||||| ||||||    
T  33824790 ttgttgaaaatgagttaaaataacatca 33824763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 22536877 - 22536966
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgt 206  Q
    |||| |||||||||||||||| |||||||| | ||||| ||||||| |||||||||| ||| || ||||||||| |||||||||||||||    
T  22536877 agggacggatccagacttttgatacatgtgggactaaatttttaaagaaacaataatgcaaactgtattaaaaagaagaaataacattgt 22536966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 36634023 - 36633907
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacc---tatattaaaaataagaaataacattgtttgatac 213  Q
    |||| |||||||||||||||  || ||||| ||||||| ||| ||| || |||||||||||     ||||||||||||||| ||||||||||||||||||    
T  36634023 agggacggatccagacttttaatatatgtggggctaaattttcaaagaa-caataatacaaataattatattaaaaataagtaataacattgtttgatac 36633925  T
Q  214 aatacattagaatgaaaa 231  Q
    ||||||||| ||||||||    
T  36633924 aatacattacaatgaaaa 36633907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 17076706 - 17076605
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgt--taaaagaacatctctttctatataagttaca 316  Q
    |||| |||||||||||||  | || |||||||| |||||||| || ||| |||||||| ||||||||   |||| |||||||||||| ||||||||||||    
T  17076706 attacaatgaaaatcgtctaccattcatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaaaaaaacatctctttcaatataagttaca 17076607  T
Q  317 ag 318  Q
    ||    
T  17076606 ag 17076605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 39509140 - 39509220
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttgttaaaaatga 259  Q
    ||||| |||||||||| |||||||||||||||||||||| |||| ||||||||| |||  | ||| ||||||| |||||||    
T  39509140 tatatgaaaaataagatataacattgtttgatacaatacaattacaatgaaaattgtcttccatcaatttgttgaaaatga 39509220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 320
Target Start/End: Complemental strand, 980302 - 980134
Alignment:
Q  151 taaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttg 249  Q
    |||| |||| || ||| |||||| |||  ||||||||||||||||||||||||||||||||  ||||| |||| ||| |||||| ||   |||| |||||    
T  980302 taaaattttgaagaaataataatgcaaattatattaaaaataagaaataacattgtttgatgtaatacaattacaataaaaatcatctattatctatttg 980203  T
Q  250 ttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagac 320  Q
    || ||||||   |||||| |||||| |  ||| | ||||||||  || | ||||| |||||||||||||||    
T  980202 ttgaaaatgtactaaaataacatcattgttaactattaaaaga--atatttttctctataagttacaagac 980134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 18476024 - 18475949
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||| |||||||  |||||| | || | |||||||||||  ||||||||||||||||||||| |||||||||    
T  18476024 catttgttgaaaatgaactaaaattatataattactaattgttctaagaacatctctttctatataggttacaaga 18475949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 29670020 - 29670095
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||| ||||| || |||||| |||| | |  |||||||||||||||||||| ||||||||||||||| ||||    
T  29670020 catttgttgaaaataagctaaaataacattattgataattgttaaaagaacatctttttctatataagttagaaga 29670095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 32868374 - 32868432
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctcttt 302  Q
    |||||||||||||||| ||||||| |||||| || ||||||||  ||||||||||||||    
T  32868374 catttgttaaaaatgaattaaaattacatcattaataattgttctaagaacatctcttt 32868432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 7607457 - 7607392
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctat 182  Q
    ||||| ||||||||||||| ||||||||||  |||||| ||| ||||||| |||||||||| ||||    
T  7607457 aggggtggatccagactttaggtacatgtggagctaaaatttcaaataaataataatacaaactat 7607392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 11079952 - 11079877
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||| |||||||  |||||| | |||| || ||||||||  |||||||||||||| |||||| |||||||||    
T  11079952 catttgttgaaaatgaaataaaatcatatcattattaattgttctaagaacatctctttttatataggttacaaga 11079877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 168 - 330
Target Start/End: Original strand, 2158600 - 2158762
Alignment:
Q  168 aataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaat 267  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||    
T  2158600 aataatgcaaactatattaaaaataagaaataacattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaat 2158699  T
Q  268 gacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtcaattag 330  Q
     | |||| | |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  2158700 aatatcattgctaattgttaaaagaagatctctttctatataggttacaagacggtcatttag 2158762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 119 - 331
Target Start/End: Original strand, 2813910 - 2814122
Alignment:
Q  119 gggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac 218  Q
    |||||||| ||||||||||||| || ||  |||||| ||| ||| |||||||||| ||| |||||||||||||| ||||||| |||||||||||||||||    
T  2813910 gggcggattcagacttttggtatatatggagctaaaatttcaaagaaacaataatgcaaactatattaaaaatatgaaataaaattgtttgatacaatac 2814009  T
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| ||||||| ||||| | |||||||||||| |||||||| |||||| |||||| | || |||||||||| | ||| | |||||||| |||||||||     
T  2814010 attacaatgaaagtcgtctcatatccatttgttgaaaatgagctaaaataacatcattgcttattgttaaaacatcatatatttctatacaagttacaat 2814109  T
Q  319 acggtcaattagt 331  Q
    ||||||| |||||    
T  2814110 acggtcatttagt 2814122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 4377155 - 4377312
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    |||||| |||||||||||| ||||||||||  |||| | ||| ||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  4377155 aggggcagatccagactttaggtacatgtggagctataatttcaaagaaacaataatgcaaactatattaaaaataagaaataatattgtttgatacaat 4377254  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatca 274  Q
    |||||| |||||||||||||   |||||||||||| ||||||||||||||||||||||    
T  4377255 acattacaatgaaaatcgtcttatatccatttgttgaaaatgagttaaaatgacatca 4377312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 119 - 274
Target Start/End: Original strand, 36247748 - 36247904
Alignment:
Q  119 gggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaa-ataagaaataacattgtttgatacaata 217  Q
    ||||||||||||||||| ||||||||||  |||||| ||||||| |||||||||| ||| ||||||||||| ||||||| | | ||||||||||||||||    
T  36247748 gggcggatccagactttaggtacatgtggagctaaaattttaaagaaacaataatgcaaactatattaaaaaataagaattcatattgtttgatacaata 36247847  T
Q  218 cattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatca 274  Q
    ||||| ||||||||||||| | |||||||||||| |||||||| |||||||||||||    
T  36247848 cattacaatgaaaatcgtctcatatccatttgttgaaaatgagctaaaatgacatca 36247904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 117 - 274
Target Start/End: Original strand, 33517948 - 33518106
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    ||||||||||| |||| || |||| ||| |  | |||| ||||||| ||||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  33517948 aggggcggatctagacattaggtatatgcggagttaaaattttaaagaaacaataatacaaattatattaaaaataagaaataatattgtttgatacaat 33518047  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgt-taaaaatgagttaaaatgacatca 274  Q
    |||||| |||||||||||||   |||||||||||  ||||||||| |||||||||||||    
T  33518048 acattacaatgaaaatcgtcttatatccatttgtcgaaaaatgagctaaaatgacatca 33518106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 1111982 - 1112121
Alignment:
Q  182 tattaaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtacta 280  Q
    |||||| ||||||||||||||||||||||| | ||||| ||| ||| ||||| ||| | |||||||||||| |||||||  |||||| || ||  |  ||    
T  1111982 tattaataataagaaataacattgtttgatgcgatacaattacaatcaaaattgtctcttatccatttgttgaaaatgatctaaaataacctcgttgtta 1112081  T
Q  281 attgttaaaagaacatctctttctatataagttacaagac 320  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  1112082 attgttaaaagaacatgtatttctatataagttacaagac 1112121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 33518114 - 33518207
Alignment:
Q  239 ctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttc--tatataagttacaagacggtcaattag 330  Q
    |||||||| |||| |||||||| ||||||||||||| | ||||||||||||||||||||| ||||  |||||||||||||||||| ||| ||||    
T  33518114 ctatccatctgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctatttctatatataagttacaagacgatcacttag 33518207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 25023296 - 25023213
Alignment:
Q  239 ctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggt 323  Q
    ||||| ||||||| |||||| | |||||| | |||| | ||||||||||||||||||||| ||||||||||||||||||||||||    
T  25023296 ctatctatttgtttaaaatgcgctaaaataa-atcattgctaattgttaaaagaacatctatttctatataagttacaagacggt 25023213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 50723271 - 50723219
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaa 231  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  50723271 ctatattaaaaataagaaataacattgtttgatataatacattacaatgaaaa 50723219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 36247913 - 36248004
Alignment:
Q  240 tatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctata--taagttacaagacggtcaattag 330  Q
    |||||||||||| ||| |||| ||||||||||||| |  |||||||||||||||||| ||||||||||  |||||||||| ||||||| ||||    
T  36247913 tatccatttgttgaaa-tgagctaaaatgacatcattgttaattgttaaaagaacatatctttctatatgtaagttacaaaacggtcatttag 36248004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 52849903 - 52849789
Alignment:
Q  129 agacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatga 228  Q
    |||| |||| ||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||        ||||||| |||||||| |||| |||||    
T  52849903 agacatttgatacatatgaggctaaaattttaaagaaacaataatacaaactatattaaaaataa--------attgtttaatacaatatattacaatga 52849812  T
Q  229 aaatcgtcgcctatccatttgtt 251  Q
    |||| ||  |||||| |||||||    
T  52849811 aaatggtttcctatcaatttgtt 52849789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 4377333 - 4377413
Alignment:
Q  253 aaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctt---tctatataagttacaagacggtcaattag 330  Q
    |||||||| ||||||||||||| | ||||||||| ||||||||||| ||   | |||||||||||||||||| ||| ||||    
T  4377333 aaaatgagctaaaatgacatcattgctaattgtttaaagaacatcttttttctatatataagttacaagacgatcatttag 4377413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 53840526 - 53840452
Alignment:
Q  245 atttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    ||||||| |||||||  |||||| | |||| |||||||||||  |||||||||||||| |||||| |||||||||    
T  53840526 atttgttgaaaatgaactaaaattatatcattactaattgttttaagaacatctctttatatataggttacaaga 53840452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 13216541 - 13216618
Alignment:
Q  242 tccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||||| |||||||   ||||| | |||| |||||||||||  ||||||||||||||||||||| || ||||||    
T  13216541 tccatttgttgaaaatgaaacaaaatcatatcattactaattgttctaagaacatctctttctatataggtcacaaga 13216618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 14272519 - 14272444
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||| |||||||  || ||| | |||| || ||||||||| ||||||| ||||||||||||| |||||||||    
T  14272519 catttgttgaaaatgaactagaattaaatcaatagtaattgttataagaacaactctttctatataggttacaaga 14272444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 20526661 - 20526586
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    ||||||||||||||||  |||||| | |||| |||||||||||  || || ||||| ||||||||| |||||||||    
T  20526661 catttgttaaaaatgaactaaaattatatcattactaattgttctaaaaatatctcattctatataggttacaaga 20526586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 45538208 - 45538283
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||| |||||||  |||||| | |||| |||| ||||||  ||||||||||| ||||||||| |||||||||    
T  45538208 catttgttgaaaatgaactaaaattatatcattactgattgttctaagaacatctccttctatataggttacaaga 45538283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 51070315 - 51070394
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    ||||||||||||| || ||| ||| ||||| || |||| |||| || |||||||| | ||| ||||||||||||||||||    
T  51070315 aggggcggatccaaacatttagtatatgtggggttaaaattttgaaaaaacaatattgcaaactatattaaaaataagaa 51070394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 30804383 - 30804424
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatacatt 221  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  30804383 tatactaaaaataataaataacattgtttgattcaatacatt 30804424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 35765262 - 35765339
Alignment:
Q  242 tccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    ||||||| || |||||||  |||||| | |||| |||||||||||  |||||||||||| ||| |||| |||||||||    
T  35765262 tccatttattgaaaatgaactaaaatcatatcattactaattgttctaagaacatctctctctgtataggttacaaga 35765339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 46671920 - 46671961
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatacatt 221  Q
    |||||||||||||| |||||| |||||||||| |||||||||    
T  46671920 tatattaaaaataataaataatattgtttgattcaatacatt 46671961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 8064949 - 8065107
Alignment:
Q  167 caataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaa 266  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||| | ||||||  ||||    
T  8064949 caataatacaaactatattaaaaataagaaattacattgtttgatacaatacattacaatgaaaatcgtctcctatccattggttgagaatgagcgaaaa 8065048  T
Q  267 tgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtca 325  Q
    |||||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  8065049 tgacatcattgctaattgttaaaagaacatctctttttatataagttataagacggtca 8065107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 117 - 323
Target Start/End: Complemental strand, 27464445 - 27464239
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    ||||| ||||| |||| ||||||||||||||||||||| ||| |||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||||||    
T  27464445 aggggaggatctagacatttggtacatgtgaggctaaaatttcaaataaacaacaatacaaactatatttaaaataagaaataacgttgtttgatacaat 27464346  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |||| | ||| |||| ||||   |||| ||||||| |||||||  ||||||||| ||| |  ||||||||||||||| |||| |||||||||||||||||    
T  27464345 acatcacaattaaaaccgtctattatctatttgttgaaaatgaactaaaatgacgtcattgttaattgttaaaagaatatctttttctatataagttaca 27464246  T
Q  317 agacggt 323  Q
    |||||||    
T  27464245 agacggt 27464239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 169 - 333
Target Start/End: Complemental strand, 9539748 - 9539584
Alignment:
Q  169 ataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatg 268  Q
    ||||| ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||| || | |||||||||||| |||||||| ||||||     
T  9539748 ataatgcaaactatattaaaaatatgaaataacatcgtttgatacaatacattacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaata 9539649  T
Q  269 acatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtcaattagtca 333  Q
    | |||| | || |||||||||||| ||| ||||| |||||||||||| | ||||||| |||||||    
T  9539648 atatcattgcttattgttaaaagatcatatctttttatataagttacgatacggtcatttagtca 9539584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 10781359 - 10781247
Alignment:
Q  162 ataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagt 261  Q
    ||||| || ||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||   |||| ||||||| |||||| |     
T  10781359 ataaaaaaaaatgcaaactatattaaaaataagaaataatattgtttgatacaatacattacaatgaaaatcgtcttatatctatttgttgaaaatgtgc 10781260  T
Q  262 taaaatgacatca 274  Q
    |||||||||||||    
T  10781259 taaaatgacatca 10781247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 10781234 - 10781142
Alignment:
Q  240 tatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttcta--tataagttacaagacggtcaattag 330  Q
    |||||||||||| ||||||||||||||||| |||  | ||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||    
T  10781234 tatccatttgttgaaaatgagttaaaatgaaatcgttgctaattgttaaaagaacatatctttctatatataagttacaagacggtcatttag 10781142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 23347795 - 23347876
Alignment:
Q  137 ggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac 218  Q
    |||| ||||| ||||||| ||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||    
T  23347795 ggtatatgtgtggctaaaatttcaaataaacaataatgcaaactatattaaatataagaaataacattgtttgatgcaatac 23347876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 1017097 - 1016998
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| ||| |||||||||  | ||||||||||| | |||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  1017097 attacaataaaaatcgtctgccatccatttgttgagaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 1016998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 34912305 - 34912366
Alignment:
Q  148 ggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttg 209  Q
    ||||||| ||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||    
T  34912305 ggctaaaattttaaagaaacaataatacaagctatattaaaaataagaaataaaattatttg 34912366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 23353434 - 23353503
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagtt 313  Q
    |||||||| ||||||||||||||| |||| | | |||| | |||||||||||| ||||||||||||||||    
T  23353434 catttgttgaaaatgagttaaaataacataattgctaaatattaaaagaacatttctttctatataagtt 23353503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 34912362 - 34912428
Alignment:
Q  245 atttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagt 312  Q
    |||||||||||||| || |||||||||||| |  |||| ||||||||||||||| |||||||||||||    
T  34912362 atttgttaaaaatgggt-aaaatgacatcatttttaatggttaaaagaacatctatttctatataagt 34912428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 43909452 - 43909373
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    |||||||||||||||| ||| ||| ||||| | ||||| |||| || |||||||||| |||  |||||||||||||||||    
T  43909452 aggggcggatccagacatttagtatatgtgggactaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 43909373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 9516840 - 9516763
Alignment:
Q  119 gggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    |||||||||||||| ||| ||| || || ||||||| |||| || |||||||||| |||  |||||||||||||||||    
T  9516840 gggcggatccagacatttagtatatatggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 9516763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 10160220 - 10160147
Alignment:
Q  246 tttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||| ||||||| ||||||| | |||| |||||||| ||  ||||||||||||||||| ||| |||||||||    
T  10160220 tttgttgaaaatgaattaaaattatatcattactaattattctaagaacatctctttctacataggttacaaga 10160147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 9539830 - 9539762
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatatt 185  Q
    |||||||||||||||||||| ||| |||||||  |||| ||| ||| |||||||||| ||| |||||||    
T  9539830 aggggcggatccagacttttagtatatgtgagattaaaatttcaaagaaacaataatgcaaactatatt 9539762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 14230171 - 14230092
Alignment:
Q  240 tatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||||||| |||||||| |||||| | || | |||||| ||||  |||||||| ||||||||||||  ||||||||    
T  14230171 tatccatttgttgaaaatgagctaaaattatattattactaactgttttaagaacatttctttctatatatcttacaaga 14230092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 1405936 - 1406026
Alignment:
Q  185 taaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatca 274  Q
    ||||||||| |||||||||| ||||| |||||| | |||  ||||| ||| ||  ||||||||||| | ||||||||||||||| ||||||    
T  1405936 taaaaataaaaaataacattatttgacacaatataattatgatgaatatcttcttctatccatttgatgaaaatgagttaaaataacatca 1406026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 9370705 - 9370758
Alignment:
Q  263 aaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |||||||||||| |||||||| ||  |||||| |||||||||||||| ||||||    
T  9370705 aaaatgacatcattactaattattctaagaacgtctctttctatatatgttaca 9370758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 29703116 - 29703075
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatacatt 221  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  29703116 tatactaaaaataataaataacattgtttgattcaatacatt 29703075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 321
Target Start/End: Original strand, 45867632 - 45867709
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    |||||||| | |||||||||||||  ||||  |||||||||||  |||||||||| ||| ||||||  ||||||||||    
T  45867632 catttgttgagaatgagttaaaattgcatcgttactaattgttctaagaacatctatttttatatacattacaagacg 45867709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 281219 - 281144
Alignment:
Q  120 ggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    ||||||||| ||| ||| ||| ||||| ||||||| |||| || |||||||||| |||  |||||||||||||||||    
T  281219 ggcggatcc-gacatttagtatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 281144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 118 - 330
Target Start/End: Complemental strand, 33941814 - 33941610
Alignment:
Q  118 ggggcggatccagacttttggtacatgtgaggctaaact-tttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaat 216  Q
    |||||||||||||||||| |||| |||||  ||||||   |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  33941814 ggggcggatccagactttaggtatatgtggagctaaaaaatttaaaaaaacaataatacaaactatattaaaaataagaaataacattgtttgataaaat 33941715  T
Q  217 acattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttaca 316  Q
    |||||| |||         | |||||| ||||||| ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||||||||||    
T  33941714 acattacaat---------ctcctatcaatttgttgaaaatgagttaaaataacatcattgctaattgttaaaagaacatttctttctatataagttaca 33941624  T
Q  317 agacggtcaattag 330  Q
    ||||||||| ||||    
T  33941623 agacggtcatttag 33941610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 146 - 330
Target Start/End: Complemental strand, 30074788 - 30074602
Alignment:
Q  146 gaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatc--gtcgcctatc 243  Q
    ||||||||| ||| ||| |||  ||||| |||  |||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||  ||| ||||||    
T  30074788 gaggctaaattttcaaagaaaagataatgcaaattatattaaaaataagaaacaacatcgtttgatacaatacattacaatcaaaatctcgtctcctatc 30074689  T
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtcaattag 330  Q
    |||||||| ||||| |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  30074688 catttgttgaaaataagttaaaatgacatcattgttaattgttaaaagaacatctctttctatataagttacaagatggtcatttag 30074602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 164 - 309
Target Start/End: Complemental strand, 46090335 - 46090190
Alignment:
Q  164 aaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagtta 263  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||| | ||| |||||||| ||||||| |||    
T  46090335 aaacaatgatacaaactatattaaaaataaaaaataacattgtttggtacgatacattacaatgaaaatcgtctcatattcatttgttgaaaatgaatta 46090236  T
Q  264 aaatgacatcagtactaattgttaaaagaacatctctttctatata 309  Q
    ||||||||||  || |||||||||||||||| ||||||||||||||    
T  46090235 aaatgacatccttagtaattgttaaaagaacttctctttctatata 46090190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 2945519 - 2945378
Alignment:
Q  182 tattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatc--gtcgcctatccatttgttaaaaatgagttaaaatgacatcagtact 279  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||| |||||| ||||||| |||||||  ||||||||||||| | ||    
T  2945519 tattaaaaataagaaataacattgtttgatacaatacattacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgct 2945420  T
Q  280 aattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    |||||||||||||| ||| ||||||||||||| |||||||||    
T  2945419 aattgttaaaagaaaatcactttctatataagctacaagacg 2945378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 24658426 - 24658554
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 300  Q
    |||| |||||||||||| |||| ||||||||||||  |||||||||||||| |||||||||||||||||||||| | |||| |||||| |||||||||||    
T  24658426 cattctttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaatgacatcattgctaa-tgttaatagaacatctct 24658524  T
Q  301 ttctatataagttacaagacggtcaattag 330  Q
    ||||||||||||||||||||||||| ||||    
T  24658525 ttctatataagttacaagacggtcatttag 24658554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 330
Target Start/End: Original strand, 25232916 - 25233079
Alignment:
Q  168 aataatacaacctatattaaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaa 266  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||||||| | ||| ||||||||| ||| |||||||||||||| ||||||||||||||    
T  25232916 aataatgcaaactatatgaaaaataagaaataacattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaa 25233015  T
Q  267 tgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtcaattag 330  Q
    | ||| |  | |||||| |||||||||||| ||||| ||||||| |||||||||| ||| ||||    
T  25233016 taacagcgctgctaatttttaaaagaacatttctttttatataaattacaagacgatcatttag 25233079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 274
Target Start/End: Complemental strand, 32222025 - 32221865
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataa-acaataatacaacctatattaaaaataagaaataacattgtttgatacaa 215  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||| || | ||||||  |   |||||||||||||||||||||||||||||| |||||    
T  32222025 aggggcggatccagactttttgtacatgtggggctaaatttttaaaaaataaaataatgtatattatattaaaaataagaaataacattgtttggtacaa 32221926  T
Q  216 tacattagaatgaaaatc--gtcgcctatccatttgttaaaaatgagttaaaatgacatca 274  Q
    || |||| | ||| ||||  ||| |||||||||||||| ||||||||||||||||||||||    
T  32221925 taaattacattgagaatctcgtctcctatccatttgttgaaaatgagttaaaatgacatca 32221865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 324
Target Start/End: Original strand, 39785484 - 39785624
Alignment:
Q  185 taaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaatt 283  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||| |||||| ||| || |  |||||    
T  39785484 taaaaataagaaataacattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataatt 39785583  T
Q  284 gttaaaagaacatctctttctatataagttacaagacggtc 324  Q
    |||||||||||  | ||||| ||| ||||||||||||||||    
T  39785584 gttaaaagaacgcccctttcgataaaagttacaagacggtc 39785624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 319
Target Start/End: Original strand, 27080399 - 27080536
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtac 278  Q
    |||| |||||||||||||||| |||||||||||||||||||  | ||| | ||||||| |||||  ||||||| |||||||| ||||||||||||| | |    
T  27080399 ctatgttaaaaataagaaatatcattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatca-tgc 27080495  T
Q  279 taattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  27080496 taattgttaaaagaacatatctttttatataagttacaaga 27080536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 27197902 - 27197765
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtac 278  Q
    |||| |||||||||||||||| |||||||||||||||||||  | ||| | ||||||| |||||  ||||||| |||||||| ||||||||||||| | |    
T  27197902 ctatgttaaaaataagaaatatcattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatca-tgc 27197806  T
Q  279 taattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  27197805 taattgttaaaagaacatatctttttatataagttacaaga 27197765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 38300481 - 38300348
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 300  Q
    ||||||||||||||||  |||| ||||||||||||| |||||||||||||| |||||||| |||||||||| || |  |||||||||| | ||||||| |    
T  38300481 cattgtttgatacaatgtattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgataattgttaataaaacatctat 38300382  T
Q  301 ttctatat----aagttacaagacggtcaattag 330  Q
    ||||||||    ||||||||||||||||| ||||    
T  38300381 ttctatataagtaagttacaagacggtcatttag 38300348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 34346960 - 34346837
Alignment:
Q  151 taaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgt 250  Q
    |||| ||| ||| |||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||||| | |||||||||||    
T  34346960 taaaatttcaaagaaacaataatgcaaactacattaaaaataagaaataacattgttttatacaatacattaaagtgaaaatcgtctcatatccatttgt 34346861  T
Q  251 taaaaatgagttaaaatgacatca 274  Q
      |||||||   ||||||||||||    
T  34346860 ggaaaatgaacgaaaatgacatca 34346837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 1691663 - 1691769
Alignment:
Q  214 aatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagtt 313  Q
    |||| |||| |||| ||||| || |||||||||||||| ||||||||||||||||| |||| |  |||||||||| ||||||||||||| ||||||||||    
T  1691663 aatatattacaatgtaaatcatctcctatccatttgttgaaaatgagttaaaatgatatcattgttaattgttaatagaacatctctttatatataagtt 1691762  T
Q  314 acaagac 320  Q
    |||||||    
T  1691763 acaagac 1691769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 39781090 - 39780991
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||||||  | ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  39781090 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 39780991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 43266026 - 43265927
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||| ||  | ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  43266026 attacaatgaaaatcatctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttctataaaagttacaag 43265927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 49143946 - 49144016
Alignment:
Q  139 tacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttg 209  Q
    ||||||||  |||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  49143946 tacatgtgttgctaaaattttaaagaaaaaataatacaaactatattaaaaataagaaataacattgtttg 49144016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 26824559 - 26824474
Alignment:
Q  183 attaaaaataagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaat 267  Q
    |||||||||||||||||| ||| |||||| ||||||| ||| ||||||||||||| |||||| ||||||| |||||||| ||||||    
T  26824559 attaaaaataagaaataatattatttgatgcaatacaattacaatgaaaatcgtctcctatcgatttgttgaaaatgaggtaaaat 26824474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 310
Target Start/End: Original strand, 36906243 - 36906370
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtac 278  Q
    ||||| |||||||| |||||||||||||   |||||    ||||||||||||||||||  |||| |  ||||| ||| ||||||||||| |||| | |      
T  36906243 ctatactaaaaatacgaaataacattgtgcaataca----attagaatgaaaatcgtctactattcgattgttgaaagtgagttaaaataacattattgt 36906338  T
Q  279 taattgttaaaagaacatctctttctatataa 310  Q
    ||||||| ||||||||||||||||||||||||    
T  36906339 taattgtcaaaagaacatctctttctatataa 36906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 315
Target Start/End: Original strand, 26787257 - 26787394
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagta 277  Q
    |||||||||| ||||||||||||||||||| || |||||| |||| ||| ||||| ||  | ||| |||||||| |||| ||| |||||| | | ||       
T  26787257 ctatattaaagataagaaataacattgtttaatgcaatacaattacaatcaaaattgtgtcttattcatttgttgaaaacgagataaaataatagcatcg 26787356  T
Q  278 ctaattgttaaaagaacatctctttctatataagttac 315  Q
    |||||| ||||||||| || || |||||||||||||||    
T  26787357 ctaatttttaaaagaatatttcattctatataagttac 26787394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 40717008 - 40716887
Alignment:
Q  210 atacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatat 308  Q
    |||||||||| ||| ||| ||||| ||| | |||||||||||| |||||||| |||||| |||   ||||||| | |||||||||||| ||||||| |||    
T  40717008 atacaatacaattacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataacagtggtactaacttttaaaagaacatttctttctgtat 40716909  T
Q  309 aagttacaagacggtcaattag 330  Q
    || |||||| || |||| ||||    
T  40716908 aaattacaaaactgtcatttag 40716887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 10512115 - 10512031
Alignment:
Q  241 atccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtca 325  Q
    ||||||||||| |||||||| |||||| ||| || | ||||||| |  ||||||||||||||||||| ||||||||  |||||||    
T  10512115 atccatttgttgaaaatgagctaaaataacaccattgctaattggttcaagaacatctctttctataaaagttacacaacggtca 10512031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 7899403 - 7899482
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    ||||||||||||| || ||| ||| ||||| ||||||| |||| || |||||||||| |||  |||||||||||||||||    
T  7899403 aggggcggatccaaacatttagtatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 7899482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 16841114 - 16841044
Alignment:
Q  182 tattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttgtt 251  Q
    ||||||||||||||||||| ||| |||||| |||||| |||| ||||||||| ||| |||||| |||||||    
T  16841114 tattaaaaataagaaataatattttttgatgcaatacaattacaatgaaaattgtctcctatctatttgtt 16841044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 26050085 - 26050162
Alignment:
Q  119 gggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    |||||||||||||| |||  || ||||| ||||||| |||| || |||||||||| |||  |||||||||||||||||    
T  26050085 gggcggatccagacatttaatatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 26050162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 2945916 - 2945846
Alignment:
Q  117 aggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaa 190  Q
    |||||||||||||||||||||||||||  ||||||||| ||| ||| |   |||||| ||| ||||||||||||    
T  2945916 aggggcggatccagacttttggtacatacgaggctaaattttcaaaga---aataatgcaaactatattaaaaa 2945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 6051154 - 6051216
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctat 306  Q
    |||||||| |||||||| |||||| |||||| |||||| ||||  ||||||||||||| ||||    
T  6051154 catttgttgaaaatgagataaaataacatcattactaactgtttcaagaacatctcttactat 6051216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 5467448 - 5467521
Alignment:
Q  244 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaa 317  Q
    |||||||| |||||||  |||||| | |||| ||||| ||||| ||| ||| |||||||||||||| |||||||    
T  5467448 catttgttgaaaatgaagtaaaattatatcattactatttgtttaaaaaacgtctctttctatataggttacaa 5467521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 26059448 - 26059521
Alignment:
Q  123 ggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaa 196  Q
    |||||||||| |||  || ||||| ||||||| |||| || |||||||||| |||  |||||||||||||||||    
T  26059448 ggatccagacatttaatatatgtggggctaaaattttgaagaaacaataatgcaaattatattaaaaataagaa 26059521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 33255064 - 33255023
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatacatt 221  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  33255064 tatactaaaaataataaataacattgtttgattcaatacatt 33255023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 324
Target Start/End: Complemental strand, 461474 - 461307
Alignment:
Q  157 tttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaa 256  Q
    |||||| ||| |||||| ||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| |||||| ||||||| ||||    
T  461474 tttaaagaaataataatgcaaactatattaaaaataagaagtaacattgtttggtacaatacattacaatgaaaatcgtctcctatctatttgttgaaaa 461375  T
Q  257 tgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagacggtc 324  Q
    |||| ||||||||||||| | ||||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  461374 tgagctaaaatgacatcattgctaattgttaaaataacatatctttatatataagttacaaaacggtc 461307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 148 - 289
Target Start/End: Complemental strand, 16461785 - 16461644
Alignment:
Q  148 ggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatt 247  Q
    ||||||| ||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||| ||||    
T  16461785 ggctaaaatttcaaagaaacaataatgcaaactatattaaaaataagaaataacattgtttgatacaatatattacaatgaaaattgtctcctattcatt 16461686  T
Q  248 tgttaaaaatgagttaaaatgacatcagtactaattgttaaa 289  Q
    |||| |||||||| | ||||||||||| |  |||||||||||    
T  16461685 tgttgaaaatgagcttaaatgacatcattgttaattgttaaa 16461644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 6689174 - 6689316
Alignment:
Q  164 aaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagtta 263  Q
    |||||||||| |||  ||||||||||| ||   ||||||  |||||||||||||||||| ||||||||||||| ||||||||||| || ||| |||| ||    
T  6689174 aaacaataatgcaaattatattaaaaaaaa---ataacaaggtttgatacaatacattacaatgaaaatcgtctcctatccatttattgaaattgagcta 6689270  T
Q  264 aaatgacatcagtactaattgttaaaagaacatctctttctatata 309  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||    
T  6689271 aaatgacatcattgctaattgttaaaagatcatctctttctatata 6689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 21883260 - 21883392
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 300  Q
    |||||||| ||||||| ||||| |||||||||||||  ||||||||||||| ||||||||  ||||||||| || | ||||||||| | |||| ||||||    
T  21883260 cattgtttaatacaatgcattacaatgaaaatcgtcttctatccatttgttgaaaatgagaaaaaatgacagcattgctaattgtttatagaatatctct 21883359  T
Q  301 ttctatataagttacaagacggtcaattagtca 333  Q
    ||||||||||||||||| | |||||||||||||    
T  21883360 ttctatataagttacaacagggtcaattagtca 21883392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 2920062 - 2919958
Alignment:
Q  125 atccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatacattaga 224  Q
    ||||||||||||| |||||||| ||||||| ||| ||| |||  ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  2920062 atccagacttttgatacatgtggggctaaattttcaaagaaa--ataatgcaaactatattaaaaataagaaataacattgtttgatacaatacattaca 2919965  T
Q  225 atgaaaa 231  Q
    |||||||    
T  2919964 atgaaaa 2919958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 14607867 - 14607750
Alignment:
Q  199 aacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatct 298  Q
    |||||||||||||||||||||||| |||||||||  || |||||||||||||| |||||||| |||||| |||||| | || |||||||||| | ||| |    
T  14607867 aacattgtttgatacaatacattacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataacatcatttcttattgttaaaa-atcatat 14607769  T
Q  299 ctttctatataagttacaa 317  Q
    ||||| ||| |||||||||    
T  14607768 ctttcaatacaagttacaa 14607750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 30702677 - 30702801
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatac-attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtac 278  Q
    |||| |||||||||||||||||||||||||||||||||| || |  || |||||||||  ||||||| ||||  |||||||| |||||| || |||||      
T  30702677 tatactaaaaataagaaataacattgtttgatacaatacaatgacgataaaaatcgtctactatccagttgtcgaaaatgagctaaaataacttcagttt 30702776  T
Q  279 taattgttaaaagaacatctctttc 303  Q
    ||||||| |||||||||||||||||    
T  30702777 taattgtaaaaagaacatctctttc 30702801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 24901708 - 24901801
Alignment:
Q  225 atgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    ||||||||||||  | ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  24901708 atgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 24901801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 1975435 - 1975260
Alignment:
Q  122 cggatccagacttttggtacatgtgaggctaaacttttaaataaacaataatacaacctatattaaaaataagaaataacattgtttgatacaatac-at 220  Q
    |||||| |||| || |||| ||||| || |||| ||||||| ||| ||||||  || ||||||||||||||| ||||||||||| ||||| |||||| ||    
T  1975435 cggatctagacattcggtatatgtgtggttaaaattttaaagaaaaaataatgtaaactatattaaaaataataaataacattggttgattcaatacaat 1975336  T
Q  221 tagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacat 296  Q
     | ||||||||| ||| | | || ||||| | ||||||||||||||| | | || | |||||| ||||||||||||    
T  1975335 aacaatgaaaattgtctcatgtctatttgatgaaaatgagttaaaataatagcattgctaatttttaaaagaacat 1975260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 18816933 - 18817032
Alignment:
Q  219 attagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaag 318  Q
    |||| |||||||||||||    ||||||||||| |||||||| || ||| |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  18816933 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 18817032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 330
Target Start/End: Original strand, 30705275 - 30705420
Alignment:
Q  180 tatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtact 279  Q
    |||| ||||||||||||||||||||||||||||||||||| ||     |||||||||   |||||||||||| || |||| ||||||| || ||| |  |    
T  30705275 tatactaaaaataagaaataacattgtttgatacaatacaata-----aaaatcgtctattatccatttgttgaacatgatttaaaataacttcaatgtt 30705369  T
Q  280 aattgttaaaagaacatctctttctatataagttacaagacggtcaattag 330  Q
    |||||| ||||||| || ||||||| | || ||||||||| ||||| ||||    
T  30705370 aattgtgaaaagaaaatatctttctgtgtatgttacaagatggtcatttag 30705420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 33704117 - 33704205
Alignment:
Q  201 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgag-ttaaaatgacatcagtactaattgttaa 288  Q
    |||||||||||||||||||||| ||| ||||| |||  ||||| |||||||||||||||| | |||||||||||| |  ||||||||||    
T  33704117 cattgtttgatacaatacattacaataaaaattgtcttctatctatttgttaaaaatgagctaaaaatgacatcattgttaattgttaa 33704205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 14430080 - 14430023
Alignment:
Q  262 taaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||||| |||||| |||||||||||  ||||||||||||||||||||| |||||||||    
T  14430080 taaaattacatcattactaattgttttaagaacatctctttctatatacgttacaaga 14430023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 8150889 - 8150815
Alignment:
Q  192 aagaaataacattgtttgatacaataca-ttagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaa 265  Q
    ||||| |||||||||||||| ||||||| ||| ||| |||||||||  ||||||||||||| |||||||| ||||    
T  8150889 aagaattaacattgtttgatgcaatacaattacaataaaaatcgtctactatccatttgttgaaaatgagctaaa 8150815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 35188058 - 35188103
Alignment:
Q  207 ttgatacaatacattagaatgaaaatcgtcgcctatccatttgtta 252  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||    
T  35188058 ttgatacaatacattacaatgaaaatcgtctcttatccatttgtta 35188103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 14607926 - 14607871
Alignment:
Q  118 ggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataat 173  Q
    ||||||||||||||||||||||| ||| | ||||||| ||| ||| ||||||||||    
T  14607926 ggggcggatccagacttttggtatatggggggctaaaatttcaaagaaacaataat 14607871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 19267097 - 19267059
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaata 217  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  19267097 ctatattaaaaataagaaataacattatttgatataata 19267059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 35187957 - 35188015
Alignment:
Q  116 taggggcggatccagacttttggtacatgtgaggctaaacttttaaataaacaataata 174  Q
    ||||| |||||||||||||| ||| ||||||  |||||| ||||||||||| |||||||    
T  35187957 tagggacggatccagactttaggttcatgtggagctaaaattttaaataaataataata 35188015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 6261873 - 6261825
Alignment:
Q  271 atcagtactaattgttaaaagaacatctctttctatataagttacaaga 319  Q
    |||| |||||||||||  |||||| |||||||||||||| |||||||||    
T  6261873 atcattactaattgttttaagaacttctctttctatataggttacaaga 6261825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 11380065 - 11380013
Alignment:
Q  269 acatcagtactaattgttaaaagaacatctctttctatataagttacaagacg 321  Q
    |||||| |||||||||||  ||||||||| ||||| ||||| |||||||||||    
T  11380065 acatcattactaattgttttaagaacatcactttcaatatatgttacaagacg 11380013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 330
Target Start/End: Complemental strand, 964 - 817
Alignment:
Q  179 ctatattaaaaataagaaataacattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtac 278  Q
    ||||| ||||||||||||||||||||||   |||||||    || |||||||||||||  |||| |  ||||| |||||||| |||| | |||||| | |    
T  964 ctatactaaaaataagaaataacattgtgcaatacaat----tacaatgaaaatcgtctactattcgattgttgaaaatgagctaaactaacatcattgc 869  T
Q  279 taattgttaaaagaacatctctttctatataagttacaagacggtcaattag 330  Q
    ||||||| |||||||||| |||||||||||||||||||||| ||||| ||||    
T  868 taattgtcaaaagaacatatctttctatataagttacaagatggtcatttag 817  T

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Target: scaffold0684 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 4160 - 4227
Alignment:
Q  253 aaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagac 320  Q
    ||||||||||||||| |||| | |||||||| ||  ||||||||||||||||||||| ||||||||||    
T  4160 aaaatgagttaaaattacataattactaattattttaagaacatctctttctatatatgttacaagac 4227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 3958 - 3891
Alignment:
Q  253 aaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatataagttacaagac 320  Q
    ||||||||||||||| |||| | |||||||| ||  ||||||||||||||||||||| ||||||||||    
T  3958 aaaatgagttaaaattacataattactaattattttaagaacatctctttctatatatgttacaagac 3891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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