View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_high_8 (Length: 350)
Name: NF7221_high_8
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 35047765 - 35048084
Alignment:
| Q |
13 |
aatataaaacatttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaaca |
112 |
Q |
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| T |
35047765 |
aatataaaacatttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaaca |
35047864 |
T |
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| Q |
113 |
accgtgaaatcctcaacaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttca |
212 |
Q |
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| T |
35047865 |
accgtgaaatcctcagcaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttca |
35047964 |
T |
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| Q |
213 |
agctattatcaaggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgccc |
312 |
Q |
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| T |
35047965 |
agctattatcaaggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgccc |
35048064 |
T |
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| Q |
313 |
gctggtactcgtctccttac |
332 |
Q |
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| T |
35048065 |
gctggtactcgtctccttac |
35048084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 329
Target Start/End: Original strand, 35026203 - 35026496
Alignment:
| Q |
36 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
135 |
Q |
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| T |
35026203 |
tttgcaggcactaattctagcagctacagacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaagtc |
35026302 |
T |
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| Q |
136 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
235 |
Q |
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| T |
35026303 |
attcatgaattagatacacaaattggtaaggaaaagatggcaatacaaacagatttgacgaagttggagtatcttcaagccattatcaaagaaacattgc |
35026402 |
T |
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| Q |
236 |
gcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctcct |
329 |
Q |
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| T |
35026403 |
gtctatacccaccagcaccactgaatttgcctcacgagtctattgagaattgtaccattggtggataccacgtgccagctggtacgcgtctcct |
35026496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 317
Target Start/End: Original strand, 35032149 - 35032430
Alignment:
| Q |
36 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
135 |
Q |
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| T |
35032149 |
tttgcaggcattaattctagcggctacagatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaagcc |
35032248 |
T |
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| Q |
136 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
235 |
Q |
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| T |
35032249 |
attcaagaattagatacacaaattggtatggaaaatatggcaataaaatcagatttggcaaagttggagtatctccaagccattatcaaggaaacattgc |
35032348 |
T |
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| Q |
236 |
gcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctgg |
317 |
Q |
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| T |
35032349 |
gtttgtacccacctggaccactcaatttgcctcatgagtctattgaggattgtaccattggtggataccacgtgccagctgg |
35032430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 327
Target Start/End: Original strand, 35040166 - 35040457
Alignment:
| Q |
36 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
135 |
Q |
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||||||| || |||||||||| || ||||||||||| || | ||||| || ||| || | | ||||||||| ||||| | |||| | | ||||| ||| |
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| T |
35040166 |
tttgcaggcactaattctagcaggtacagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaagcc |
35040265 |
T |
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| Q |
136 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagattt-gcacaagttagagtatcttcaagctattatcaaggaaacaatg |
234 |
Q |
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| T |
35040266 |
attcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgca-aagtttgaatatctcaaagccattatcaaggaaacattg |
35040364 |
T |
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| Q |
235 |
cgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctc |
327 |
Q |
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| T |
35040365 |
cgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtaccgttggtggataccacgtgccagccggtacgcgtctc |
35040457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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