View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_low_12 (Length: 335)
Name: NF7221_low_12
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 41702555 - 41702256
Alignment:
| Q |
16 |
caacagcaccaaccccctgaacctccgagcctcaccgctgcacagccagcaaggccaacaaaagctggaaccgataactgacagctattatctcaataaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702555 |
caacagcaccaaccccctgaacctccgagcctcaccgctgtacagccagcaaggccaacaaaagctggaaccgataactgacagctattatctcaataaa |
41702456 |
T |
|
| Q |
116 |
cagtcccggggactccattcccattcataaaacaaacatcccggaacctaaaaatcatgtatatttaaacatattttggatggttataattaatggatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41702455 |
cagtcccggggactccattcccattcataaaacaaacatcccggaacctaaaaatcatgtatatttaaacatattttggatggtta----taatggatat |
41702360 |
T |
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| Q |
216 |
ccggtatatttcaatatctgaaaatcttggttaatgacgtttaaaattgtaattaaatatgttcaattaactatgaacgagttgtgatacattgttatat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702359 |
-cggtatatttcaatatctgaaaatcttggttaatgacgtttaaaattgtaattaaatatgttcaattaactatgaacgagttgtgatacattgttatat |
41702261 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 6316512 - 6316552
Alignment:
| Q |
113 |
aaacagtcccggggactccattcccattcataaaacaaaca |
153 |
Q |
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| T |
6316512 |
aaacagtcccgggggttccactcccattcataaaacaaaca |
6316552 |
T |
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