View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_low_13 (Length: 331)
Name: NF7221_low_13
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 425440 - 425735
Alignment:
| Q |
22 |
ctgtttcacatacaacaaaaataaataaattttctgtatacacaaaatttcattaaactgttccaaataaacgacataaagttatctattcacaactcca |
121 |
Q |
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| T |
425440 |
ctgtttcgcatacaacaaaaataaataaattttctctatacacaaaatttcattaaactgttccaaataaacgatataaagttatctattcacaactcca |
425539 |
T |
|
| Q |
122 |
aaacattacattctttaatttcaaagcctaactattcannnnnnnnnnnnnnnnnnngattcagcaaatattattaactactagcaatcatgaaagattc |
221 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
425540 |
aaacattacattctttaatttcaaagcctaactaatcaattttatttatttatttttgattcagcaaatattattaactactagcaatcatgagagattc |
425639 |
T |
|
| Q |
222 |
taataggacaaagaaatactnnnnnnnnttcaagaactcgacctggaaaaatttaatcatgcatacgatcatgttggatttgaacatgtgctgatg |
317 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
425640 |
taataggacaaagaaatactaaaaaaaattcaagaacgcgacctggaaaaatttaatcatgcatacgatcatgttggatttgaacatgtgctgatg |
425735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 17215346 - 17215253
Alignment:
| Q |
61 |
acacaaaatttcattaaactgttccaaataaacgacataaagttatctattcacaactccaaaacattacattctttaatttcaaagcctaacta |
155 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||| |
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| T |
17215346 |
acacaaaatttcattaaacttttccaaataaacgatataaagtta-ctattcacaactccaaaacattacatttttcaaattcaaagcctaacta |
17215253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 17217786 - 17217920
Alignment:
| Q |
22 |
ctgtttcacatacaacaaaaataaataaatttt--ctgtatacacaaaatttcattaaactgttccaaataaacgacataaagttatctattcacaactc |
119 |
Q |
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|||||| ||| |||||||||| |||||||||| || ||||||||||||| |||||||| ||||||||||| || || |||||||||||||||||||| |
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| T |
17217786 |
ctgttttacaaacaacaaaaactaataaattttgtctctatacacaaaattccattaaaca-ttccaaataaatgatatgaagttatctattcacaactc |
17217884 |
T |
|
| Q |
120 |
caaaacattacattctttaatttcaaagcctaacta |
155 |
Q |
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|||||||| |||||||| || ||||||||||||||| |
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| T |
17217885 |
caaaacatcacattcttcaaattcaaagcctaacta |
17217920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 17215225 - 17215183
Alignment:
| Q |
182 |
tcagcaaatattattaactactagcaatcatgaaagattctaa |
224 |
Q |
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||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
17215225 |
tcagcaaatattattaactactaacaaacatgaaagatgctaa |
17215183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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