View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7221_low_15 (Length: 306)

Name: NF7221_low_15
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7221_low_15
NF7221_low_15
[»] scaffold0019 (4 HSPs)
scaffold0019 (49-161)||(23615-23727)
scaffold0019 (178-297)||(13014-13134)
scaffold0019 (178-297)||(22701-22818)
scaffold0019 (7-47)||(24195-24235)
[»] chr8 (19 HSPs)
chr8 (49-126)||(17974051-17974128)
chr8 (49-126)||(20725670-20725747)
chr8 (49-126)||(20738568-20738645)
chr8 (49-135)||(20746857-20746943)
chr8 (49-106)||(20733611-20733668)
chr8 (1-47)||(5082276-5082322)
chr8 (1-47)||(5761476-5761522)
chr8 (1-45)||(19140707-19140751)
chr8 (1-47)||(6101817-6101863)
chr8 (1-47)||(6573120-6573166)
chr8 (1-47)||(20083702-20083748)
chr8 (1-47)||(20178593-20178639)
chr8 (1-46)||(39936075-39936120)
chr8 (1-47)||(6202718-6202764)
chr8 (1-47)||(37292647-37292693)
chr8 (1-47)||(42817971-42818017)
chr8 (8-45)||(23948211-23948248)
chr8 (1-45)||(36727105-36727149)
chr8 (1-45)||(42265575-42265619)
[»] chr5 (4 HSPs)
chr5 (49-126)||(22961437-22961514)
chr5 (1-47)||(7484944-7484990)
chr5 (1-47)||(19921580-19921626)
chr5 (1-47)||(21300108-21300154)
[»] chr1 (9 HSPs)
chr1 (49-134)||(45497278-45497363)
chr1 (1-47)||(19676653-19676699)
chr1 (1-47)||(21046113-21046159)
chr1 (1-47)||(42912991-42913037)
chr1 (251-292)||(6196774-6196814)
chr1 (251-292)||(6204625-6204665)
chr1 (7-47)||(16058378-16058418)
chr1 (7-45)||(13302849-13302887)
chr1 (1-45)||(22350658-22350702)
[»] scaffold0002 (1 HSPs)
scaffold0002 (49-126)||(121707-121784)
[»] chr6 (14 HSPs)
chr6 (49-126)||(13826181-13826258)
chr6 (52-131)||(14474073-14474152)
chr6 (1-47)||(7827914-7827960)
chr6 (1-47)||(19655295-19655341)
chr6 (1-47)||(23150351-23150397)
chr6 (1-47)||(18703510-18703556)
chr6 (1-47)||(18709445-18709491)
chr6 (1-47)||(27125541-27125587)
chr6 (1-47)||(27330045-27330091)
chr6 (1-47)||(27390785-27390831)
chr6 (250-292)||(21962711-21962752)
chr6 (1-47)||(15890776-15890822)
chr6 (7-45)||(31731971-31732009)
chr6 (11-47)||(24267801-24267837)
[»] scaffold1904 (1 HSPs)
scaffold1904 (52-109)||(36-93)
[»] scaffold1312 (1 HSPs)
scaffold1312 (52-109)||(2018-2075)
[»] chr7 (21 HSPs)
chr7 (49-126)||(12662362-12662439)
chr7 (1-47)||(12465324-12465370)
chr7 (1-47)||(13147536-13147582)
chr7 (4-47)||(11067413-11067456)
chr7 (1-48)||(46386151-46386198)
chr7 (1-47)||(12322994-12323040)
chr7 (1-47)||(20214089-20214135)
chr7 (1-47)||(20620228-20620274)
chr7 (1-44)||(14180465-14180508)
chr7 (1-47)||(8851223-8851269)
chr7 (1-47)||(10277269-10277315)
chr7 (1-47)||(12127227-12127273)
chr7 (1-47)||(12372216-12372262)
chr7 (1-47)||(32433653-32433699)
chr7 (1-45)||(4071761-4071805)
chr7 (1-45)||(15095703-15095747)
chr7 (7-45)||(15140161-15140199)
chr7 (251-292)||(15684941-15684983)
chr7 (1-45)||(12557863-12557907)
chr7 (1-45)||(13132387-13132431)
chr7 (1-45)||(35771508-35771552)
[»] chr3 (35 HSPs)
chr3 (52-109)||(4434096-4434153)
chr3 (52-109)||(4454891-4454948)
chr3 (49-126)||(30068232-30068309)
chr3 (49-109)||(18887794-18887854)
chr3 (49-109)||(18892021-18892081)
chr3 (49-109)||(18902204-18902264)
chr3 (1-47)||(17044908-17044954)
chr3 (1-47)||(17518937-17518983)
chr3 (1-47)||(17533799-17533845)
chr3 (1-47)||(40807938-40807984)
chr3 (1-47)||(40812775-40812821)
chr3 (52-126)||(40999552-40999626)
chr3 (52-126)||(41008335-41008409)
chr3 (1-47)||(49900672-49900718)
chr3 (1-47)||(50348090-50348136)
chr3 (1-47)||(22306647-22306693)
chr3 (52-126)||(27552461-27552535)
chr3 (1-47)||(35064605-35064651)
chr3 (1-47)||(41172435-41172481)
chr3 (2-47)||(17539049-17539094)
chr3 (1-47)||(10311469-10311515)
chr3 (1-47)||(10563650-10563696)
chr3 (1-47)||(11259373-11259419)
chr3 (5-47)||(14508793-14508835)
chr3 (1-47)||(35354544-35354590)
chr3 (1-47)||(44274360-44274406)
chr3 (253-292)||(15910413-15910452)
chr3 (253-292)||(15924656-15924695)
chr3 (7-45)||(11563672-11563710)
chr3 (1-47)||(17047068-17047114)
chr3 (1-47)||(17694009-17694055)
chr3 (260-292)||(5650591-5650623)
chr3 (1-45)||(13185836-13185880)
chr3 (1-45)||(19568274-19568318)
chr3 (260-292)||(19834560-19834592)
[»] scaffold0241 (2 HSPs)
scaffold0241 (1-48)||(3124-3171)
scaffold0241 (1-47)||(2506-2552)
[»] scaffold1941 (1 HSPs)
scaffold1941 (1-47)||(80-126)
[»] scaffold1766 (1 HSPs)
scaffold1766 (1-47)||(760-806)
[»] scaffold1283 (1 HSPs)
scaffold1283 (1-47)||(532-578)
[»] scaffold0111 (2 HSPs)
scaffold0111 (1-47)||(5325-5371)
scaffold0111 (1-47)||(12597-12643)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-47)||(146665-146711)
[»] chr4 (18 HSPs)
chr4 (1-47)||(10356500-10356546)
chr4 (1-47)||(16998467-16998513)
chr4 (1-47)||(25091595-25091641)
chr4 (1-47)||(53630538-53630584)
chr4 (3-47)||(11425887-11425931)
chr4 (251-291)||(22174495-22174535)
chr4 (1-47)||(37019612-37019658)
chr4 (1-47)||(42875739-42875785)
chr4 (251-292)||(7945273-7945314)
chr4 (1-47)||(6633601-6633647)
chr4 (1-47)||(15115164-15115210)
chr4 (1-47)||(46001595-46001641)
chr4 (251-292)||(17249-17290)
chr4 (251-292)||(3440726-3440766)
chr4 (4-47)||(19610269-19610312)
chr4 (259-292)||(15566708-15566741)
chr4 (259-292)||(15579354-15579387)
chr4 (262-298)||(27342484-27342520)
[»] chr2 (15 HSPs)
chr2 (1-47)||(5031193-5031239)
chr2 (1-47)||(9975871-9975917)
chr2 (1-47)||(17307428-17307474)
chr2 (1-47)||(22251512-22251558)
chr2 (1-47)||(24516128-24516174)
chr2 (1-47)||(40912262-40912308)
chr2 (1-47)||(19201264-19201310)
chr2 (1-47)||(24436590-24436636)
chr2 (1-47)||(27484541-27484587)
chr2 (1-42)||(24780909-24780950)
chr2 (257-292)||(29755506-29755541)
chr2 (1-47)||(36841206-36841252)
chr2 (1-45)||(25142145-25142189)
chr2 (1-47)||(37270641-37270687)
chr2 (6-47)||(2523811-2523852)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-47)||(169063-169107)
[»] scaffold0737 (1 HSPs)
scaffold0737 (1-47)||(4778-4824)
[»] scaffold0632 (1 HSPs)
scaffold0632 (1-47)||(1107-1153)
[»] scaffold0407 (1 HSPs)
scaffold0407 (1-47)||(11338-11384)
[»] scaffold0207 (1 HSPs)
scaffold0207 (1-47)||(13456-13502)
[»] scaffold0149 (1 HSPs)
scaffold0149 (1-47)||(29637-29683)
[»] scaffold0080 (1 HSPs)
scaffold0080 (1-47)||(21857-21903)
[»] scaffold0077 (1 HSPs)
scaffold0077 (1-47)||(34281-34327)
[»] scaffold0064 (2 HSPs)
scaffold0064 (1-47)||(58688-58734)
scaffold0064 (251-287)||(8078-8114)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-47)||(78249-78295)
[»] scaffold0001 (3 HSPs)
scaffold0001 (1-47)||(31936-31982)
scaffold0001 (1-47)||(37243-37289)
scaffold0001 (1-47)||(77629-77675)
[»] scaffold1796 (1 HSPs)
scaffold1796 (253-288)||(280-315)
[»] scaffold1633 (1 HSPs)
scaffold1633 (1-47)||(1147-1193)
[»] scaffold0334 (1 HSPs)
scaffold0334 (1-47)||(460-506)
[»] scaffold0815 (1 HSPs)
scaffold0815 (251-292)||(3881-3921)
[»] scaffold0075 (1 HSPs)
scaffold0075 (251-292)||(56947-56988)
[»] scaffold0067 (1 HSPs)
scaffold0067 (256-292)||(43382-43418)
[»] scaffold0037 (2 HSPs)
scaffold0037 (1-45)||(81509-81553)
scaffold0037 (1-45)||(113034-113078)
[»] scaffold0269 (1 HSPs)
scaffold0269 (257-292)||(13469-13504)
[»] scaffold0956 (1 HSPs)
scaffold0956 (254-292)||(699-737)
[»] scaffold0378 (1 HSPs)
scaffold0378 (251-292)||(2062-2104)
[»] scaffold0182 (1 HSPs)
scaffold0182 (251-292)||(6508-6548)
[»] scaffold0848 (1 HSPs)
scaffold0848 (7-47)||(2085-2125)
[»] scaffold0540 (1 HSPs)
scaffold0540 (256-292)||(1797-1833)
[»] scaffold0422 (1 HSPs)
scaffold0422 (260-292)||(5324-5356)
[»] scaffold0011 (1 HSPs)
scaffold0011 (251-287)||(201543-201579)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-45)||(158888-158932)


Alignment Details
Target: scaffold0019 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 23727 - 23615
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggacgagatttttacaga 148  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||| ||||||| ||||    
T  23727 aagccacttcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaaccgaggacgggatttttccaga 23628  T
Q  149 agcaaaaaacatc 161  Q
    |||||||||||||    
T  23627 agcaaaaaacatc 23615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 13134 - 13014
Alignment:
Q  178 ctgtgaatcggtctaaccctgtggcccatcagcgcgccccatgccctaaacccaataatcnnnnnnn-actaaatgcacacccctgaatactgctgcacc 276  Q
    |||||||  ||||||||||| ||||||||| |||||||||||||||||| ||||||||||        ||||| ||||||||||||||||||||||||||    
T  13134 ctgtgaactggtctaaccctatggcccatctgcgcgccccatgccctaagcccaataatcttttttttactaactgcacacccctgaatactgctgcacc 13035  T
Q  277 cccaccttgtgattgagcctc 297  Q
    |||||||||||||||||||||    
T  13034 cccaccttgtgattgagcctc 13014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 22818 - 22701
Alignment:
Q  178 ctgtgaatcggtctaaccctgtggcccatcagcgcgccccatgccctaaacccaataatcnnnnnnn-actaaatgcacacccctgaatactgctgcacc 276  Q
    ||||||| |||||| ||||||||||||||| |||||||||||   |||| ||||||||||        ||| | ||||||||||||||||||||||||||    
T  22818 ctgtgaaccggtctgaccctgtggcccatctgcgcgccccat---ctaagcccaataatcttttttttactcactgcacacccctgaatactgctgcacc 22722  T
Q  277 cccaccttgtgattgagcctc 297  Q
    |||||||||||||||||||||    
T  22721 cccaccttgtgattgagcctc 22701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 24235 - 24195
Alignment:
Q  7 aaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  24235 aaacctaattcccaaattcccataactacaacctacaacat 24195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 17974051 - 17974128
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  17974051 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 17974128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 20725670 - 20725747
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  20725670 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaagagaggaaatcagaa 20725747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 20738568 - 20738645
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||    
T  20738568 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaagagaggaaatcagaa 20738645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 20746857 - 20746943
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggacg 135  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | ||||||||| |||| || |||||    
T  20746857 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcaacctttaaaagaaagagaggaaatcagaactggggacg 20746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 20733611 - 20733668
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaa 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20733611 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaa 20733668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5082322 - 5082276
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  5082322 acttcaaaacctaattcccaaattcccataactacaacctacaacat 5082276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5761476 - 5761522
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  5761476 acttcaaaacctaattcccaaattcccataactacaacctacaacat 5761522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19140707 - 19140751
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  19140707 acttcaaaacctaattcccaaattcccataactacaacctacaac 19140751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6101863 - 6101817
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  6101863 acttcaaaacctgattcccaaattcccataactacaacctacaacat 6101817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6573166 - 6573120
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  6573166 acttcaaaacctcattcccaaattcccataactacaacctacaacat 6573120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20083748 - 20083702
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  20083748 acttcaaaacctaattcccaaattctcataactacaacctacaacat 20083702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20178639 - 20178593
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  20178639 acttcaaaacctaattcccaaattctcataactacaacctacaacat 20178593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39936120 - 39936075
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaaca 46  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39936120 acttcaaaacctaattcgcaaattcccataactacaacctacaaca 39936075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6202718 - 6202764
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  6202718 acttcaaaacctaattctcaaattctcataactacaacctacaacat 6202764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37292647 - 37292693
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  37292647 acttcaaaacctaattctcaaattctcataactacaacctacaacat 37292693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42818017 - 42817971
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||| |||||| |||||| |||||||||||||||||||||||    
T  42818017 acttcaaaatctaatttccaaattcccataactacaacctacaacat 42817971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23948211 - 23948248
Alignment:
Q  8 aacctaattcccaaatccccataactacaacctacaac 45  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  23948211 aacctaattctcaaatccccaaaactacaacctacaac 23948248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36727149 - 36727105
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| ||||||||||| |||||||| | ||||||||||||||||    
T  36727149 acttctaaacctaattctcaaatcccaaaaactacaacctacaac 36727105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42265619 - 42265575
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| || |||||||||||||| |||| ||||||||||||||||    
T  42265619 acttctaaccctaattcccaaattcccaaaactacaacctacaac 42265575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 22961514 - 22961437
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22961514 aagccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 22961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7484944 - 7484990
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  7484944 acttcaaaacctaattctcaaattctcataactacaacctacaacat 7484990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19921580 - 19921626
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||    
T  19921580 acttcaaaacctaattcccaaatttccataattacaacctacaacat 19921626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21300154 - 21300108
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  21300154 acttcaaaacctaattctcaaattcccataactactacctacaacat 21300108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 45497278 - 45497363
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgaggac 134  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||    
T  45497278 aagccaattcatggtcctttaatctatttccttttaagaatttgcatcagcctttaaaagaaaaagaggaaatcagaactgaggac 45497363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19676653 - 19676699
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    
T  19676653 acttcaaaacctaattcccaaattctcataactacaacctacaacat 19676699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21046159 - 21046113
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  21046159 acttcaaaacttaattcccaaattcccataactacaacctacaacat 21046113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42912991 - 42913037
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||    
T  42912991 acttcaaaacctaattcctaaattcccacaactacaacctacaacat 42913037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 6196814 - 6196774
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  6196814 tgcacacccctgaatactgctgca-ccccaccttgtgattga 6196774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 6204665 - 6204625
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  6204665 tgcacacccctgaatactgctgca-ccccaccttgtgattga 6204625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 16058418 - 16058378
Alignment:
Q  7 aaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  16058418 aaacctaattcccaaatttccataactacaacctacaacat 16058378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 13302849 - 13302887
Alignment:
Q  7 aaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  13302849 aaacctaattcccaaattcccaaaactacaacctacaac 13302887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22350658 - 22350702
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| || |||||||||||||| |||| ||||||||||||||||    
T  22350658 acttctaaccctaattcccaaattcccaaaactacaacctacaac 22350702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 121707 - 121784
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  121707 aagccaattcatggtcctttaatctatttccttttaagaatttgtgtcagcctttaaaagaaaaagaggaaatcagaa 121784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 13826181 - 13826258
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13826181 aagccaattcatggtcctttaatttatttccttttaagaatttgtatcagcctttaaaagaaaaagaggaaatcagaa 13826258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 14474073 - 14474152
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaattgag 131  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||| |||| ||||    
T  14474073 ccaattcatggtcctttaatctatttccttttaagaatttgtttcagcctttaaaagaaagagaggaaatcagaagtgag 14474152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7827914 - 7827960
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  7827914 acttcaaaacctaattcccaaattcccataactacaacctacaacat 7827960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19655341 - 19655295
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  19655341 acttcaaaacctaattcccaaattcccataactacaacctacaacat 19655295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23150397 - 23150351
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  23150397 acttcaaaacctaattcccaaattcccataactacaacctacaacat 23150351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18703510 - 18703556
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  18703510 acttcaaaatctaattcccaaattcccataactacaacctacaacat 18703556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18709445 - 18709491
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  18709445 acttcaaaatctaattcccaaattcccataactacaacctacaacat 18709491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27125587 - 27125541
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  27125587 acttcaaaacctaagtcccaaattcccataactacaacctacaacat 27125541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27330091 - 27330045
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  27330091 acttcaaaacctaattcccaaattgccataactacaacctacaacat 27330045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27390831 - 27390785
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  27390831 acttcaaaacctaattcccaaattgccataactacaacctacaacat 27390785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 21962711 - 21962752
Alignment:
Q  250 atgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  21962711 atgcacacccctgaatactgctgca-ccccaccttgtgattga 21962752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15890822 - 15890776
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||   || ||||||||||||||||||    
T  15890822 acttcaaaacctaattcccaaattaacaaaactacaacctacaacat 15890776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 31732009 - 31731971
Alignment:
Q  7 aaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  31732009 aaacctaattctcaaatccccaaaactacaacctacaac 31731971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 24267801 - 24267837
Alignment:
Q  11 ctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  24267801 ctaattctcaaattcccataactacaacctacaacat 24267837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1904 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1904
Description:

Target: scaffold1904; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 36 - 93
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 93  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 2018 - 2075
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2018 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 2075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 12662362 - 12662439
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||   ||||||||| ||||    
T  12662362 aagccaattcatggtcctttaatctatttccttttaagaatttgtattagcctttaaaagaaggagaggaaatcagaa 12662439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12465370 - 12465324
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  12465370 acttcaaaacctaattcccaaattcccataactacaacctacaacat 12465324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13147582 - 13147536
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  13147582 acttcaaaacctaattcccaaattcccataactacaacctacaacat 13147536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 11067413 - 11067456
Alignment:
Q  4 tcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  11067413 tcaaaacctaattcccaaattcccataactacaacctacaacat 11067456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 46386198 - 46386151
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacata 48  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  46386198 acttcaaaacctaattctcaaattcccataactacaacctacaacata 46386151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12323040 - 12322994
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  12323040 acttcaaaacctaattcccaaatttccataactacaacctacaacat 12322994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20214089 - 20214135
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  20214089 acttcaaaacttaattcccaaattcccataactacaacctacaacat 20214135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20620228 - 20620274
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  20620228 acttcaaaacctaattcccaaatttccataactacaacctacaacat 20620274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14180508 - 14180465
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaa 44  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  14180508 acttcaaaacataattcccaaattcccataactacaacctacaa 14180465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8851269 - 8851223
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||    
T  8851269 acttcaaaacctaatttccaaattctcataactacaacctacaacat 8851223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10277269 - 10277315
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  10277269 acttcaaaacctaattctcaaattctcataactacaacctacaacat 10277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12127273 - 12127227
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||||    
T  12127273 acttcaaaacctaattcccaaatttccataactaaaacctacaacat 12127227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12372216 - 12372262
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  12372216 acttcaaaacctaattctcaaattcccataactacaacctgcaacat 12372262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32433699 - 32433653
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  32433699 acttcaaaacctaattcacaaattcacataactacaacctacaacat 32433653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4071761 - 4071805
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||    
T  4071761 acttctaaacctaattctcaaatccccaaaactacaacctacaac 4071805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15095747 - 15095703
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||    
T  15095747 acttctaaacctaattcccaaattcccaaaactacaacctacaac 15095703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 15140161 - 15140199
Alignment:
Q  7 aaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  15140161 aaacctaattcccaaattcccaaaactacaacctacaac 15140199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 15684941 - 15684983
Alignment:
Q  251 tgcacacccctgaatactgctgca-cccccaccttgtgattga 292  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  15684941 tgcacacccctgaatactgctgcaccccccatcttgtgattga 15684983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12557863 - 12557907
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| |||||||||| |||||| |||| ||||||||||||||||    
T  12557863 acttctaaacctaatttccaaattcccaaaactacaacctacaac 12557907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13132431 - 13132387
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| ||||||||||||||||| |||| |||||| |||||||||    
T  13132431 acttctaaacctaattcccaaattcccaaaactacgacctacaac 13132387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35771552 - 35771508
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| |||||||||||||||||  ||| ||||||||||||||||    
T  35771552 acttctaaacctaattcccaaatttccaaaactacaacctacaac 35771508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 4434096 - 4434153
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4434096 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 4434153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 4454891 - 4454948
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 109  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4454891 ccaattcatggtcctttaatctatttccttttaagaatttgtatcagcctttaaaaga 4454948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 30068309 - 30068232
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| ||||    
T  30068309 aagccgattcatggtcctttaatctatttccttttaagaatttgtattagcctttaaaagaaagagaggaaatcagaa 30068232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 18887854 - 18887794
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 109  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  18887854 aagccaattcatggtcctttgatctatttccttttaagaatttgtatcagcctttaaaaga 18887794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 18892081 - 18892021
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 109  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  18892081 aagccaattcatggtcttttgatctatttccttttaagaatttgtatcagcctttaaaaga 18892021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 18902264 - 18902204
Alignment:
Q  49 aagccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaaga 109  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  18902264 aagccaattcatggtcttttgatctatttccttttaagaatttgtatcagcctttaaaaga 18902204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17044908 - 17044954
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  17044908 acttcaaaacctaattcccaaattcccataactacaacctacaacat 17044954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17518983 - 17518937
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  17518983 acttcaaaacctaattcccaaattcccataactacaacctacaacat 17518937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17533845 - 17533799
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  17533845 acttcaaaacctaattcccaaattcccataactacaacctacaacat 17533799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40807938 - 40807984
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  40807938 acttcaaaacctaattcccaaattcccataactacaacctacaacat 40807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40812775 - 40812821
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  40812775 acttcaaaacctaattcccaaattcccataactacaacctacaacat 40812821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 40999552 - 40999626
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||   ||||||||| ||||    
T  40999552 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttaaaagaaggagaggaaatcagaa 40999626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 41008335 - 41008409
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||   ||||||||| ||||    
T  41008335 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttaaaagaaggagaggaaatcagaa 41008409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49900672 - 49900718
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  49900672 acttcaaaacctaattcccaaattcccataactacaacctacaacat 49900718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50348136 - 50348090
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  50348136 acttcaaaacctaattcccaaattcccataactacaacctacaacat 50348090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22306693 - 22306647
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  22306693 acttcaaaacctaattcacaaattcccataactacaacctacaacat 22306647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 27552535 - 27552461
Alignment:
Q  52 ccaattcatggtcctttaatctattttcttttaagaatttgtatcagcctttaaaagacaaagaggaaattagaa 126  Q
    |||||||||||||||||||||||||| ||||||||||||||| | || |||| |||||   ||||||||| ||||    
T  27552535 ccaattcatggtcctttaatctatttccttttaagaatttgttttagtctttgaaagaaggagaggaaatcagaa 27552461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35064651 - 35064605
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  35064651 acttcaaaacctaattcccaaatttccataactacaacctacaacat 35064605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41172481 - 41172435
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  41172481 acttcaaaacctaattccctaattcccataactacaacctacaacat 41172435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 17539049 - 17539094
Alignment:
Q  2 cttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||    
T  17539049 cttcaaaacctaatttccaaattcccataactacaacctacaacat 17539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10311469 - 10311515
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  10311469 acttcaaaacctaattctcaaattctcataactacaacctacaacat 10311515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 10563650 - 10563696
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||    
T  10563650 acttcaaaacctaattcccaaatttccataactacaaactacaacat 10563696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11259373 - 11259419
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||    
T  11259373 acttcaaaacctaattcccaaattctcataactacaatctacaacat 11259419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 14508793 - 14508835
Alignment:
Q  5 caaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  14508793 caaaacctaattccaaaattcccataactacaacctacaacat 14508835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35354544 - 35354590
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||||    
T  35354544 acttcaaaacctaatttccaaattcccataactacaaccaacaacat 35354590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 44274360 - 44274406
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||    
T  44274360 acttcaaaatataattcccaaattcccataactacaacctacaacat 44274406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 15910413 - 15910452
Alignment:
Q  253 cacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  15910413 cacaccccataatactgctgcacccccaccttgtgattga 15910452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 15924656 - 15924695
Alignment:
Q  253 cacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  15924656 cacaccccataatactgctgcacccccaccttgtgattga 15924695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 11563672 - 11563710
Alignment:
Q  7 aaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  11563672 aaacctaattcccaaattcccaaaactacaacctacaac 11563710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17047068 - 17047114
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||| |||||||||||| |  ||||||||||||||||||||    
T  17047068 acttcaaaacttaattcccaaattcaaataactacaacctacaacat 17047114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17694009 - 17694055
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||| ||||||| |||||  ||||||||||||||||||||||    
T  17694009 acttcaaaatctaattcacaaatttccataactacaacctacaacat 17694055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 5650623 - 5650591
Alignment:
Q  260 ctgaatactgctgcacccccaccttgtgattga 292  Q
    |||||| ||||||||||||||||||||||||||    
T  5650623 ctgaatgctgctgcacccccaccttgtgattga 5650591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13185836 - 13185880
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| |||||||||||||||||  ||| ||||||||||||||||    
T  13185836 acttctaaacctaattcccaaatttccaaaactacaacctacaac 13185880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19568318 - 19568274
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| || |||||||||||||| |||| ||||||||||||||||    
T  19568318 acttctaaccctaattcccaaattcccaaaactacaacctacaac 19568274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 19834560 - 19834592
Alignment:
Q  260 ctgaatactgctgcacccccaccttgtgattga 292  Q
    |||||| ||||||||||||||||||||||||||    
T  19834560 ctgaatgctgctgcacccccaccttgtgattga 19834592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3124 - 3171
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacata 48  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3124 acttcaaaacctaattcccaaattcccataactacaacctacaacata 3171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2506 - 2552
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2506 acttcaaaacctaattcccaaattcccataactacaacctacaacat 2552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1941 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1941
Description:

Target: scaffold1941; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 80 - 126
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  80 acttcaaaacctaattcccaaattcccataactacaacctacaacat 126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1766 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1766
Description:

Target: scaffold1766; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 806 - 760
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  806 acttcaaaacctaattcccaaattcccataactacaacctacaacat 760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1283 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1283
Description:

Target: scaffold1283; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 578 - 532
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  578 acttcaaaacctaattcccaaattcccataactacaacctacaacat 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5325 - 5371
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  5325 acttcaaaacctaattcccaaattcccataactacaacctacaacat 5371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12643 - 12597
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  12643 acttcaaaacctaattcccaaattcccataactacaacctataacat 12597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 146665 - 146711
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  146665 acttcaaaacctaattcccaaattcccataactacaacctacaacat 146711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10356546 - 10356500
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  10356546 acttcaaaacctaattcccaaattcccataactacaacctacaacat 10356500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16998467 - 16998513
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  16998467 acttcaaaacctaattcccaaattcccataactacaacctacaacat 16998513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25091595 - 25091641
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  25091595 acttcaaaacctaattcccaaattcccataactacaacctacaacat 25091641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 53630584 - 53630538
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  53630584 acttcaaaacctaattcccaaattcccataactacaacctacaacat 53630538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 11425887 - 11425931
Alignment:
Q  3 ttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  11425887 ttcaaaacctaattcccaaattcccataactacaacctacaacat 11425931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 22174535 - 22174495
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattg 291  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22174535 tgcacacccctgaatactgctgcacccccaccttgtgattg 22174495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37019612 - 37019658
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  37019612 acttcaaaacctaattctcaaattcccataactacaacctacaacat 37019658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42875739 - 42875785
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  42875739 acttcaaaacctatttcccaaattcccataactacaacctacaacat 42875785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 7945273 - 7945314
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7945273 tgcacgcccctgaatactgctgcacccccaccttgtgattga 7945314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6633647 - 6633601
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  6633647 acttcaaaacctaattctcaaattctcataactacaacctacaacat 6633601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15115164 - 15115210
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||    
T  15115164 acttcaaaaaataattcccaaattcccataactacaacctacaacat 15115210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46001641 - 46001595
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||    
T  46001641 acttcaaaacctaattctcaaattctcataactacaacctacaacat 46001595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 17249 - 17290
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  17249 tgcacacccttgaatgctgctgcacccccaccttgtgattga 17290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 3440726 - 3440766
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  3440726 tgcacacccctgaatactgctgca-ccccaccttgtgattga 3440766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 19610269 - 19610312
Alignment:
Q  4 tcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||    
T  19610269 tcaaaacttaattctcaaattcccataactacaacctacaacat 19610312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 15566741 - 15566708
Alignment:
Q  259 cctgaatactgctgcacccccaccttgtgattga 292  Q
    |||| |||||||||||||||||||||||||||||    
T  15566741 cctggatactgctgcacccccaccttgtgattga 15566708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 15579387 - 15579354
Alignment:
Q  259 cctgaatactgctgcacccccaccttgtgattga 292  Q
    |||| |||||||||||||||||||||||||||||    
T  15579387 cctggatactgctgcacccccaccttgtgattga 15579354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 27342520 - 27342484
Alignment:
Q  262 gaatactgctgcacccccaccttgtgattgagcctca 298  Q
    |||| |||||||||||||||||||||||||| |||||    
T  27342520 gaatgctgctgcacccccaccttgtgattgaacctca 27342484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 5031239 - 5031193
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  5031239 acttcaaaacctaattcccaaattcccataactacaacctacaacat 5031193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9975871 - 9975917
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  9975871 acttcaaaacctaattcccaaattcccataactacaacctacaacat 9975917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17307428 - 17307474
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  17307428 acttcaaaacctaattcccaaattcccataactacaacctacaacat 17307474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22251558 - 22251512
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  22251558 acttcaaaacctaattcccaaattcccataactacaacctacaacat 22251512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24516128 - 24516174
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  24516128 acttcaaaacctaattcccaaattcccataactacaacctacaacat 24516174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40912262 - 40912308
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  40912262 acttcaaaacctaattcccaaattcccataactacaacctacaacat 40912308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19201310 - 19201264
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||    
T  19201310 acttcaaaacctaattcccaaattcctataactacaacctacaacat 19201264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24436590 - 24436636
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  24436590 acttcaaaacctaatttccaaattcccataactacaacctacaacat 24436636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27484587 - 27484541
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  27484587 acttcaaaacttaattcccaaattcccataactacaacctacaacat 27484541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24780950 - 24780909
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctac 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  24780950 acttcaaaacctaattcccaaattcccataactacaacctac 24780909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 29755506 - 29755541
Alignment:
Q  257 cccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  29755506 cccctgaatactgctgcacccccaccttgtgattga 29755541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36841206 - 36841252
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||    
T  36841206 acttcaaaacctaatttctaaattcccataactacaacctacaacat 36841252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25142145 - 25142189
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||    
T  25142145 acttctaaacctaattcccaaattcccaaaactacaacctacaac 25142189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37270641 - 37270687
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||| |||||| ||||| | |||||||||||||||||||||    
T  37270641 acttcaaaacttaattctcaaattctcataactacaacctacaacat 37270687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 2523852 - 2523811
Alignment:
Q  6 aaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||| |||||| ||||||| |||||||||||||||    
T  2523852 aaaacctaatttccaaattcccataaatacaacctacaacat 2523811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 169107 - 169063
Alignment:
Q  3 ttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  169107 ttcaaaacctaattcccaaattcccataactacaacctacaacat 169063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4824 - 4778
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  4824 acttcaaaacctaattcccaaattcccataactacgacctacaacat 4778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1107 - 1153
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  1107 acttcaaaacctaattcccaaattcccataactacaacctaaaacat 1153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11384 - 11338
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||    
T  11384 acttcaaaacttaattcccaaattcccataactacaacctacaacat 11338  T

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Target: scaffold0207 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 13502 - 13456
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  13502 acttcaaaacctaattcccaaattcccaaaactacaacctacaacat 13456  T

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Target: scaffold0149 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29683 - 29637
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  29683 acttcaaaacctaattcccaaattcccataactacaacctacgacat 29637  T

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Target: scaffold0080 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21903 - 21857
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  21903 acttcaaaacctaattcccaaattcccataaatacaacctacaacat 21857  T

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Target: scaffold0077 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34281 - 34327
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  34281 acttcaaaacctgattcccaaattcccataactacaacctacaacat 34327  T

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Target: scaffold0064 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 58688 - 58734
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  58688 acttcaaaacctaattctcaaattcccataactacaacctacaacat 58734  T

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Target: scaffold0064; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 8114 - 8078
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtg 287  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  8114 tgcacacccctgaacactactgcacccccaccttgtg 8078  T

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Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 78295 - 78249
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||    
T  78295 acttcaaaacctaatttccaaattcccataactacaacctacaacat 78249  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31936 - 31982
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  31936 acttcaaaacctaattcccaaattcccataactacaacctataacat 31982  T

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Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 37243 - 37289
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  37243 acttcaaaacctaattcccaaattcccataactacaacctataacat 37289  T

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Target: scaffold0001; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 77629 - 77675
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||    
T  77629 acttcaaaacctaattctcaaattcccataactacaacctacaacat 77675  T

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Target: scaffold1796 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1796
Description:

Target: scaffold1796; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 280 - 315
Alignment:
Q  253 cacacccctgaatactgctgcacccccaccttgtga 288  Q
    ||||||||||||||||||||||||||||||||||||    
T  280 cacacccctgaatactgctgcacccccaccttgtga 315  T

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Target: scaffold1633 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1633
Description:

Target: scaffold1633; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1147 - 1193
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||    
T  1147 acttcaaaacctaattcccaaattacaataactacaacctacaacat 1193  T

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Target: scaffold0334 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 460 - 506
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||    
T  460 acttcaaaacctaatttccaaattctcataactacaacctacaacat 506  T

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Target: scaffold0815 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 3921 - 3881
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  3921 tgcacacccctgaatactgctgca-ccccaccttgtgattga 3881  T

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Target: scaffold0075 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 56947 - 56988
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  56947 tgcacacccttgaatgctgctgcacccccaccttgtgattga 56988  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 43418 - 43382
Alignment:
Q  256 acccctgaatactgctgcacccccaccttgtgattga 292  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43418 acccctgaatactgttgcacccccaccttgtgattga 43382  T

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Target: scaffold0037 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 81509 - 81553
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||    
T  81509 acttctaaacctaattcccaaattcccaaaactacaacctacaac 81553  T

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Target: scaffold0037; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 113078 - 113034
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| ||||||||||||||||| |||| || |||||||||||||    
T  113078 acttctaaacctaattcccaaattcccaaaattacaacctacaac 113034  T

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Target: scaffold0269 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 13504 - 13469
Alignment:
Q  257 cccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13504 cccctgaatgctgctgcacccccaccttgtgattga 13469  T

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Target: scaffold0956 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0956
Description:

Target: scaffold0956; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 737 - 699
Alignment:
Q  254 acacccctgaatactgctgcacccccaccttgtgattga 292  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  737 acactcctgaatgctgctgcacccccaccttgtgattga 699  T

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Target: scaffold0378 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 2062 - 2104
Alignment:
Q  251 tgcacacccctgaatactgctgca-cccccaccttgtgattga 292  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  2062 tgcacacccctgaatgctgctgcaccccccaccttgtgattga 2104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 6508 - 6548
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  6508 tgcacacccttgaatactgctgca-ccccaccttgtgattga 6548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0848 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0848
Description:

Target: scaffold0848; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 2125 - 2085
Alignment:
Q  7 aaacctaattcccaaatccccataactacaacctacaacat 47  Q
    |||||||||||||||||  ||| ||||||||||||||||||    
T  2125 aaacctaattcccaaatttccaaaactacaacctacaacat 2085  T

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Target: scaffold0540 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0540
Description:

Target: scaffold0540; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 1833 - 1797
Alignment:
Q  256 acccctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  1833 acccctggatactgctgcacccctaccttgtgattga 1797  T

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Target: scaffold0422 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 5356 - 5324
Alignment:
Q  260 ctgaatactgctgcacccccaccttgtgattga 292  Q
    ||||||||||||||||||| |||||||||||||    
T  5356 ctgaatactgctgcacccctaccttgtgattga 5324  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 201579 - 201543
Alignment:
Q  251 tgcacacccctgaatactgctgcacccccaccttgtg 287  Q
    ||||||||||  |||||||||||||||||||||||||    
T  201579 tgcacaccccataatactgctgcacccccaccttgtg 201543  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 158932 - 158888
Alignment:
Q  1 acttcaaaacctaattcccaaatccccataactacaacctacaac 45  Q
    ||||| || |||||||||||||| |||| ||||||||||||||||    
T  158932 acttctaaccctaattcccaaattcccaaaactacaacctacaac 158888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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