View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7221_low_16 (Length: 290)
Name: NF7221_low_16
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 41565102 - 41565242
Alignment:
| Q |
1 |
atagtcaagcaatcaagtttcttcacactcaatcaactaa---cttgtcaaaacttgtaaaactaataaggaaatgctatgttgtatgaaaaacaaacag |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41565102 |
atagtcaagcaatcaagtttcttcacactcaatcaactaataacttgtcaaaacttgtaaaactaataaggaaatgctatgttgtatgaaaaacaaacag |
41565201 |
T |
|
| Q |
98 |
gcacaataaatgaaatac----acgtatcacaatctcttga |
134 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41565202 |
gcacaataaatgaaatacacgtacgtatcacaatctcttga |
41565242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 273
Target Start/End: Original strand, 41565567 - 41565688
Alignment:
| Q |
152 |
tattccaacaaatcatatctcttggtgctgcgacgaggcgcttctgtccttcgcggcaccatttctccatcctttccgacggtcggtcctgccttcactc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
41565567 |
tattccaacaaatcatatctcttggtgctgcgacgaggcgcttctatcctccgcggcaccatttctccatcctttccgacagtcagtcctgccttcactc |
41565666 |
T |
|
| Q |
252 |
tgcttccttattccgtcgtcac |
273 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
41565667 |
tgcttccttattccgccgtcac |
41565688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University