View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7221_low_2 (Length: 551)
Name: NF7221_low_2
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_2 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0027 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 122814 - 123365
Alignment:
| Q |
1 |
atatacatggatcaatagaaaggatgnnnnnnntaagacatattgat-atggaagaacacaacttataagttattcattatttatacatttagttaaccg |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
122814 |
atatacatggatcaatagaaaggatgaaaaaaataaggcatattgattatggaagaacacaacttataagttattcattatttatacatttagttaaccg |
122913 |
T |
|
| Q |
100 |
tgtctcttctacaa-gctactgatctacagttttagtttatattcttcaaacaagatggttgaaattctcttaatttaatgaacacttttatttaaagag |
198 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
122914 |
tgtctcttctacaaagctactgatctagagttttagtttatattcttcaaacaagatggttgaaattctcttaatttaatgaacacttttatttaaagag |
123013 |
T |
|
| Q |
199 |
acatataaactcttgaaacattatttgatttcataaaattgtctctctttaaatagtaatatttcatatataggtaagaaacacggttgtagacattttc |
298 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
123014 |
acatataaactcatgaaacattattttatttcataaatttgtctctctttaaatagtaatatttcatatagaggtaagagacacggttgtagacatttt- |
123112 |
T |
|
| Q |
299 |
acacatgagaaatttgaacatttctaacacgtgtgttcccaactctatgcttaggaacatgaatagtaagcacaccattgtccatataagccttaacatg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
123113 |
acacatgagaaatttgaacatttctaacacgtgtgttcccaactctatgcttaggaacatgaatagtaagcacaccattatccatataagccttaacatg |
123212 |
T |
|
| Q |
399 |
atcaaccttagaattttcaggcaaggtaagacgttgaacaaaatgaccactagcaacttcaactctatgccaccctcctctttgttcttccttctcaaca |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123213 |
atcaaccttagaattttcaggcaaggtaagacgttgaacaaaatgaccactagcaacttcaactctatgccaccctcctctttgttcttccttctcaaca |
123312 |
T |
|
| Q |
499 |
cttttctcacaaatgatacatagaactctatcctcatcaacttcaactcgaac |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123313 |
cttttctcacaaatgatacatagaactctatcctcatcaacttcaactcgaac |
123365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 7619685 - 7619639
Alignment:
| Q |
369 |
cacaccattgtccatataagccttaacatgatcaaccttagaatttt |
415 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
7619685 |
cacaccattttccatattagccttaacttgatcaaccttagcatttt |
7619639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University