View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_low_20 (Length: 258)
Name: NF7221_low_20
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 490376 - 490617
Alignment:
| Q |
1 |
acaaatcctatatttctatttttcccccaatgtggtaaccctccatatttgaacaaccctatttgttctatctcttcaattatatcttcataaagcctag |
100 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490376 |
acaaatcctatatttctattttttccccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctag |
490475 |
T |
|
| Q |
101 |
gagtcaatggatctttactgcggtaatataagatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgag |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490476 |
gagtcaatggatctttactgcggtaatatatgatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgag |
490575 |
T |
|
| Q |
201 |
gattccattgtacaagtctaagccacacagtgcctttggctc |
242 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| |
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| T |
490576 |
gattccattgtacaagtctaagccacacaatgcctttggctc |
490617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 49016378 - 49016169
Alignment:
| Q |
1 |
acaaatcctatatttctatttttcccccaatgtggtaaccctccatatttgaacaaccctatttgttctatctcttcaattatatcttcataaagcctag |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |
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| T |
49016378 |
acaaatcctaagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctag |
49016279 |
T |
|
| Q |
101 |
gagtcaatggatctttactgcggtaatataagatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgag |
200 |
Q |
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||||||||||||||||||| ||||||||| |||||| || ||||||||| |||||| ||||||||||||||||||||||||||||| || ||||| || |
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| T |
49016278 |
gagtcaatggatctttactacggtaatatgtgatgtcgaaatccacagca--ttctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataag |
49016181 |
T |
|
| Q |
201 |
gattccattgta |
212 |
Q |
| |
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|||||||||||| |
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| T |
49016180 |
gattccattgta |
49016169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 9072070 - 9071870
Alignment:
| Q |
12 |
atttctatttttcccccaatgtggtaaccctccatatttgaacaaccctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatgga |
111 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| ||||| | || |||||||| |||||||||| || ||||||||||||||||||| || |||| |
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| T |
9072070 |
atttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattgga |
9071971 |
T |
|
| Q |
112 |
tctttactgcggtaatataagatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgt |
211 |
Q |
| |
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||||| || || |||||| ||| ||||| || | ||||| ||| ||||| | ||| |||||||||| ||||||||||||||| || |||||||||| |
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| T |
9071970 |
tctttgctacgataatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgt |
9071871 |
T |
|
| Q |
212 |
a |
212 |
Q |
| |
|
| |
|
|
| T |
9071870 |
a |
9071870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 9059350 - 9059238
Alignment:
| Q |
16 |
ctatttttcccccaatgtggtaaccctccatatttgaacaaccctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatctt |
115 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| || | ||||||||| || |||||||||| | |||||||||||||||||||||| |||||||| |
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| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
|
| Q |
116 |
tactgcggtaata |
128 |
Q |
| |
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| || |||||||| |
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|
| T |
9059250 |
tgctacggtaata |
9059238 |
T |
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