View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_low_25 (Length: 247)
Name: NF7221_low_25
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_25 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 124788 - 124557
Alignment:
| Q |
5 |
aatgagatggacatcaaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccac |
104 |
Q |
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| T |
124788 |
aatgagatgaccatcaaagcaactaatcataagtttaggctggtgtttaatgttgcaacaactatcgatagcatcgataaacatgacatacccaaaccac |
124689 |
T |
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| Q |
105 |
cattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaa |
204 |
Q |
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| T |
124688 |
cattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaatcatcattcttttaattaagcttttgtttaa |
124589 |
T |
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| Q |
205 |
tgcattttgtatttaatacgaatttgtgatgt |
236 |
Q |
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| T |
124588 |
tgcattttgtatttaatacgaatttgtgatgt |
124557 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 23699885 - 23699791
Alignment:
| Q |
80 |
gacaaacatgacatacccaaaccaccattctgcttcaaggaatttgatatgataaagaagggcgtactaaggcccgatgtccttataggttaaat |
174 |
Q |
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| T |
23699885 |
gacaaacatgacatacctagaccatcattcagtttcaaggagtttgatgagatcaagaagggaatagtaaggccagatgtccttataggtaaaat |
23699791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 22079639 - 22079490
Alignment:
| Q |
20 |
aaagcaactaatcataagtttaggctggtgtttaatgctgcaacaactattgatagcatcgacaaacatgacatacccaaaccaccattctgcttcaagg |
119 |
Q |
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||||||||| ||||| ||| || |||||||||||| || ||||| | |||| | ||| ||||| |||||||| ||||||||| | ||| ||| |||| |
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| T |
22079639 |
aaagcaactgatcatccattttggttggtgtttaatggtggaacaagtgttgacaacattgacaagcatgacattcccaaaccatctttcaactttaagg |
22079540 |
T |
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| Q |
120 |
aatttgatatgataaagaagggcgtactaaggcccgatgtccttataggt |
169 |
Q |
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| T |
22079539 |
actttgatgagatcaagaagggagcactaaggccagatgtcctaataggt |
22079490 |
T |
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