View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7221_low_26 (Length: 243)

Name: NF7221_low_26
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7221_low_26
NF7221_low_26
[»] chr2 (2 HSPs)
chr2 (1-221)||(5136271-5136500)
chr2 (1-188)||(18481879-18482075)
[»] chr3 (1 HSPs)
chr3 (3-155)||(24405125-24405277)
[»] chr4 (3 HSPs)
chr4 (4-197)||(44311597-44311800)
chr4 (26-155)||(29847737-29847869)
chr4 (77-133)||(38011487-38011544)
[»] chr1 (3 HSPs)
chr1 (26-133)||(16219230-16219338)
chr1 (4-77)||(30569523-30569596)
chr1 (83-133)||(18628907-18628956)
[»] chr7 (1 HSPs)
chr7 (5-129)||(16994569-16994697)
[»] scaffold0174 (1 HSPs)
scaffold0174 (77-143)||(30744-30809)
[»] chr5 (1 HSPs)
chr5 (77-133)||(19932357-19932414)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5136271 - 5136500
Alignment:
Q  1 tttgattctctgatgtttccaagattgttgagttctgcaggtttcaaggaattatggctgcctatactttggtacttgctcaaaagagctttcacgcttg 100  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5136271 tttgattctctgatgtttccaggactgttgagttctgcaggtttcaaggaattatggctgcctatactttggtacttgctcgaaagagctttcacgcttg 5136370  T
Q  101 ttgcttgttcaaggagctgttggcacttggattcgttaccgtgctagtggtcgat---------atttttaaatcctaactgtttttgcagaagttcact 191  Q
     |||||||||| ||||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||    
T  5136371 ctgcttgttcagggagctgttggcacttggattcgttaccgtgctagcggtcgatccattcgccatttttaaatcctaactgtttttgcagaagttcact 5136470  T
Q  192 tttcatgnnnnnnngtagcttggtttcgtg 221  Q
    |||||||       ||||||||||||||||    
T  5136471 tttcatgttcttttgtagcttggtttcgtg 5136500  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 18482075 - 18481879
Alignment:
Q  1 tttgattctctgatgtttccaagattgttgagttctgcaggtttcaaggaattatggctgcctatactttggtacttgctcaaaagagctttcacgcttg 100  Q
    ||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |||||||||| |||||||    
T  18482075 tttgattctctgatgtttccaggactgttgagttcagcaggtttcaaggagttatggctgcctataattttgtacttgctcgaaagagcttttacgcttg 18481976  T
Q  101 ttgcttgttcaaggagctgttggcacttggattcgttaccgtgctagtggtcgat---------atttttaaatcctaactgtttttgcagaagttc 188  Q
     |||||||| | |||| |||||||||||||||||||||||||| | | |||||||         ||||||||||||||||||||||| |||||||||    
T  18481975 ctgcttgtttagggagttgttggcacttggattcgttaccgtgttggcggtcgatccattcgccatttttaaatcctaactgttttttcagaagttc 18481879  T

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Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 24405125 - 24405277
Alignment:
Q  3 tgattctctgatgtttccaagattgttgagttctgcaggtttcaaggaattatggctgcctatactttggtacttgctcaaaagagctttcacgcttgtt 102  Q
    |||||||||| |||||||| || |||||| || ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||      
T  24405125 tgattctctgttgtttccaggactgttgatttttgcaggtttcaaggagttatgactgcctatactttggtacttgctcgaaagagctttcacgcttgcc 24405224  T
Q  103 gcttgttcaaggagctgttggcacttggattcgttaccgtgctagtggtcgat 155  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| | |||||||    
T  24405225 gcttgttcagggagctgttggcacttggatttgttaccgtgctggaggtcgat 24405277  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 44311800 - 44311597
Alignment:
Q  4 gattctctgatgtttccaagat-tgttgagttctgcaggtttcaaggaattatggctgcctatactttggtacttgctcaaaagagctttcacgcttgtt 102  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||| | | | |||| || |||||||||||||||| |||||||| | | ||||| |    
T  44311800 gattctctgatgtttcca-gatctgttgagttctgcaggtttcaaggagtcacgactgcttacactttggtacttgctcgaaagagctcttatgcttgct 44311702  T
Q  103 gcttgttcaaggagctgttggcacttgga-ttcgttaccgtgctagtggtcgat---------atttttaaatcctaactgtttttgcagaagttcactt 192  Q
    ||||||||| ||||||| ||||||||||| || | ||||||||| | |||||||         ||||||||||||||||||||||||||||||||||||     
T  44311701 gcttgttcagggagctgatggcacttggattttgataccgtgctggcggtcgatccattcgccatttttaaatcctaactgtttttgcagaagttcactc 44311602  T
Q  193 ttcat 197  Q
    |||||    
T  44311601 ttcat 44311597  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 29847869 - 29847737
Alignment:
Q  26 tgttgagttctgcaggtttcaaggaattatggctgcctatactttggtact--tgctcaaaagagctttcacgcttgttgct-tgttcaaggagctgttg 122  Q
    ||||||| |||||||| |||||||  | ||| ||||||  |||||||| ||  ||||| ||| |||||| | ||||| || | |||||| ||||||| ||    
T  29847869 tgttgagatctgcaggcttcaaggcgtcatgactgcctccactttggttctcatgctcgaaaaagcttttatgcttgctggtgtgttcagggagctgctg 29847770  T
Q  123 gcacttggattcgttaccgtgctagtggtcgat 155  Q
    ||||||||||| | ||||||| | |||||||||    
T  29847769 gcacttggatttgataccgtgttggtggtcgat 29847737  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 38011544 - 38011487
Alignment:
Q  77 tgctcaaaagagctttcacgcttgttgctt-gttcaaggagctgttggcacttggatt 133  Q
    ||||| |||||||||| | ||||| ||||| ||||| |||||||||||||||||||||    
T  38011544 tgctcgaaagagcttttatgcttgctgcttagttcagggagctgttggcacttggatt 38011487  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 16219230 - 16219338
Alignment:
Q  26 tgttgagttctgcag--gtttcaaggaattatggctgcctatactttggtacttgctcaaaagagctttcacgcttgttgcttgttcaaggagctgttgg 123  Q
    ||||||||||||||   |||||||| | | |||||| ||||||||||||||||||||| |||||||| | | |||||  ||||||||| |||||||||||    
T  16219230 tgttgagttctgcatatgtttcaagtagtcatggctacctatactttggtacttgctcgaaagagctcttatgcttg-cgcttgttcagggagctgttgg 16219328  T
Q  124 cacttggatt 133  Q
    ||||||||||    
T  16219329 cacttggatt 16219338  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 30569596 - 30569523
Alignment:
Q  4 gattctctgatgtttccaagattgttgagttctgcaggtttcaaggaattatggctgcctatactttggtactt 77  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||||| | | ||||||||||||||||||||||    
T  30569596 gattatctgatgtttccaaatttgttgagttctgtaggtttcaaggagtcagggctgcctatactttggtactt 30569523  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 18628956 - 18628907
Alignment:
Q  83 aaagagctttcacgcttgttgcttgttcaaggagctgttggcacttggatt 133  Q
    |||||||||| | |||||||| ||||||| |||||||||||||||||||||    
T  18628956 aaagagcttttatgcttgttg-ttgttcagggagctgttggcacttggatt 18628907  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 16994569 - 16994697
Alignment:
Q  5 attctctgatgtttccaagattgttgagttctgcaggtttcaaggaattatggctgcctatactttggtacttg---ctcaaaagagctttcacgcttgt 101  Q
    |||||||||||||| || | |||||||| ||||||| |||||||   |  || ||||||| ||| ||||| |||   |||||||||||||| | ||||||    
T  16994569 attctctgatgttttcaggtttgttgagatctgcagatttcaagtcgtcttgtctgcctacactctggtatttgatgctcaaaagagcttttatgcttgt 16994668  T
Q  102 tgc-ttgttcaaggagctgttggcacttg 129  Q
    ||| ||||||| |||| ||||||||||||    
T  16994669 tgctttgttcatggagttgttggcacttg 16994697  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 30744 - 30809
Alignment:
Q  77 tgctcaaaagagctttcacgcttgttgcttgttcaaggagctgttggcacttggattcgttaccgtg 143  Q
    ||||| |||||||||| | ||||| ||||||| || |||| |||||||||||||||| |||||||||    
T  30744 tgctcgaaagagcttt-atgcttgctgcttgtgcagggagttgttggcacttggatttgttaccgtg 30809  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 19932414 - 19932357
Alignment:
Q  77 tgctcaaaagagctttcacgcttgttgc-ttgttcaaggagctgttggcacttggatt 133  Q
    ||||| |||||||||| | ||||| ||| ||||||| |||||||||||||||||||||    
T  19932414 tgctcgaaagagcttttatgcttgctgcattgttcagggagctgttggcacttggatt 19932357  T

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