View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_low_28 (Length: 239)
Name: NF7221_low_28
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 8166247 - 8166461
Alignment:
| Q |
9 |
ccgttcacaaaattgattatctaaagggcacaatctttgagctacatcctccactacaatgtgtctgattcaacgtggaacttccactttttatcaattc |
108 |
Q |
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| T |
8166247 |
ccgttcacaaaattgattatccgaagggcacaacctttgaactacatcctccactacaatgtgtctgattcaacgtggaacttccactttttatcaattc |
8166346 |
T |
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| Q |
109 |
acacgacattagttctatccaacatgaaagtaggtgtttagtcttccaatttactctagaactagaatgaagcaccatgataagaannnnnnngtctgtt |
208 |
Q |
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| T |
8166347 |
acacgacattacttctatccaacatgaaagtaggtgtttagtcttccaatttactctagaactagaatgaagcaccatgataagaatttttttgtctgtt |
8166446 |
T |
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| Q |
209 |
ccatgataagatttt |
223 |
Q |
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| T |
8166447 |
ccatgataagatttt |
8166461 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 9649942 - 9649892
Alignment:
| Q |
83 |
gtggaacttccactttttatcaattcacacgacattagttctatccaacatg |
134 |
Q |
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| T |
9649942 |
gtggaacttccacttttt-tcaattcacacaacactagttctacccaacatg |
9649892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 23866834 - 23866885
Alignment:
| Q |
83 |
gtggaacttccactttttatcaattcacacgacattagttctatccaacatg |
134 |
Q |
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| T |
23866834 |
gtgggacttccactttttttcaattcacacaacactagttctacccaacatg |
23866885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 13520967 - 13520917
Alignment:
| Q |
83 |
gtggaacttccactttttatcaattcacacgacattagttctatccaacatg |
134 |
Q |
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| T |
13520967 |
gtggaacttccacttttt-tcaattcacacaacactagttctacccaacatg |
13520917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 3693733 - 3693800
Alignment:
| Q |
83 |
gtggaacttccactttttatcaattcacacgacattagttctatccaacatgaaagtaggtgtttagtct |
152 |
Q |
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| T |
3693733 |
gtgggacttccacttttt--caattcacacaacattagttctacccaacatgagaatttgtgtttagtct |
3693800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 30659272 - 30659319
Alignment:
| Q |
86 |
gaacttccactttttatcaattcacacgacattagttctatccaacatg |
134 |
Q |
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| T |
30659272 |
gaacttccacttttt-tcaattcacacaacactagttctacccaacatg |
30659319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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