View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7221_low_3 (Length: 492)
Name: NF7221_low_3
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 53219934 - 53219453
Alignment:
| Q |
1 |
gtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagtta-tttatgaattt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||| |
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| T |
53219934 |
gtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgatttgttgtcataatttgtcttgactgaacttaatttatgaattt |
53219835 |
T |
|
| Q |
100 |
tattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53219834 |
tattaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaaa |
53219735 |
T |
|
| Q |
200 |
ttgtggcaagaaagttagtataagtaaaaatattagaaaatatatatctgtttcaaattcctccttacatgattatgcgaattctagattgagggaacat |
299 |
Q |
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| T |
53219734 |
ttgtggcaagaaagttagtataagtaaaaatattagaaaatatatatctgtttcaaattcctccttacatgattatgcgtattctagattgagggaacat |
53219635 |
T |
|
| Q |
300 |
gtccagggagctgacaacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53219634 |
gtccagggagctgacaacaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttg |
53219535 |
T |
|
| Q |
400 |
caactacagtcatgtaaaatgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgatgtc |
481 |
Q |
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| T |
53219534 |
caactacagtcatgtaaaatgttatcatatttgtgcagtagcttttcttttgttgttctgttattttgcactcattgatgtc |
53219453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15412027 - 15411804
Alignment:
| Q |
1 |
gtagggtttatgatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttgtcataatttgtcttgactaaagttatttatgaatttt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
15412027 |
gtagggtttataatgaacaatcatggatgatttaaagaatagcttcgtaatgttgaattgttttcataacttgtcttgactaaa---atttatgaatttt |
15411931 |
T |
|
| Q |
101 |
attaaaagtttaaatactatgcaggattgttgcaaagcaccattttggagagtgtaggatgtatctggttcaatcgatcagaggcaaaggatcgagaaat |
200 |
Q |
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| T |
15411930 |
attaaaagtataactactgtacaggattgttgcaaagcaccattttggagagtgtaggatgcatttggttcaatcgatcagaagcaaaggatcgagaaat |
15411831 |
T |
|
| Q |
201 |
tgtggcaagaaagttagtataagtaaa |
227 |
Q |
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| T |
15411830 |
tgtggcaagaaagttagtataagtaaa |
15411804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 220 - 478
Target Start/End: Complemental strand, 15411619 - 15411350
Alignment:
| Q |
220 |
taagtaaaaatattagaaaatatatatctgtttcaaattcctccttac----atgattatgcgaattctagattgagggaacatgtccagggagctgaca |
315 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15411619 |
taagtaaagttattagaaaatatat--ctgtttcaaattcctccttacttacatgattatgcatattctagattgagggaacatgtccagggagctgaca |
15411522 |
T |
|
| Q |
316 |
acaatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtttgtgaatcatttgcaactacagtcatgta |
415 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| |
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| T |
15411521 |
ataatcctcttctcatatttcctgagggaacttgtgtaaataatcactatacagtcatgttcaagaaggtatttgaatcatttgcaattacagtcatgta |
15411422 |
T |
|
| Q |
416 |
aa---------atgttatcatattcgtgcagtagtttttcttttgttgttctgttattttgcactcattgat |
478 |
Q |
| |
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|| ||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||| ||||||| |
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| T |
15411421 |
aaatgcagtttatgttatcatattagtgcaatagcttttctttttttgttctgttattttgcacccattgat |
15411350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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