View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7221_low_30 (Length: 213)
Name: NF7221_low_30
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7221_low_30 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 22081040 - 22081242
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22081040 |
caaaagagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
22081139 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22081140 |
gcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacatatgatgtc |
22081239 |
T |
|
| Q |
201 |
cat |
203 |
Q |
| |
|
||| |
|
|
| T |
22081240 |
cat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 41375500 - 41375346
Alignment:
| Q |
49 |
accgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggc |
148 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||| |||| ||||||||||||||| ||| |
|
|
| T |
41375500 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattcttcagcaagccttggacggtaggaatgcagggc |
41375401 |
T |
|
| Q |
149 |
tcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtccat |
203 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41375400 |
tcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 14329101 - 14328899
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
14329101 |
caaaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagcca |
14329002 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtc |
200 |
Q |
| |
|
||||||||||| ||||| |||||||||| || |||||| ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
14329001 |
gcatccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtgatgtc |
14328902 |
T |
|
| Q |
201 |
cat |
203 |
Q |
| |
|
||| |
|
|
| T |
14328901 |
cat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18166736 - 18166545
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
18166736 |
caaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaacca |
18166637 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
18166636 |
gcatccatagcgttcctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacat |
18166545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 74503 - 74699
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| ||||||| ||||||||||||||| || |||| || ||| || ||||| |||||||||||||||||| |
|
|
| T |
74503 |
caaaagagaccaaaactcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaacca |
74602 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgat |
197 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
74603 |
gcatccatagcgttcttaagcaaatgcttgacggtaggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgcaaaacatatgat |
74699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 24954778 - 24954977
Alignment:
| Q |
4 |
aagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagca |
103 |
Q |
| |
|
||||||||||||||||||||| ||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
24954778 |
aagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagca |
24954877 |
T |
|
| Q |
104 |
tccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtccat |
203 |
Q |
| |
|
|||||||| ||||| ||||| |||| || |||||| ||||| |||||| |||| |||||| |||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
24954878 |
tccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtgttgtccat |
24954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 23195959 - 23195768
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
23195959 |
caaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaacca |
23195860 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|||||||| | |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
23195859 |
gcatccatagtgttcctaagcaaacacttgacggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgcaaaacat |
23195768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 22643393 - 22643583
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| |||||| | |||||||||||||||| ||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
22643393 |
caaaagagaccaaaagtcattgaagagttcagcggtatcaaaa-tgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaacca |
22643491 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
22643492 |
gcatccatggcgttcctaagcaaacgcttgacaataggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacat |
22643583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 23621563 - 23621372
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || ||| ||||||||||| || |||| ||||||||||||||||| ||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
23621563 |
caaaagagaccaaaagtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaacca |
23621464 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|||||||| || ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||||| |
|
|
| T |
23621463 |
gcatccatagcattcctaagcaaacgtttaacggtaggaatgcatggctcaatatctagcatgaattgagtgcatctcaaaatacaaaacat |
23621372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 7360572 - 7360370
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||| | ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
7360572 |
caaaagagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagcca |
7360473 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtc |
200 |
Q |
| |
|
||||||||||| ||||| | ||||||| || |||||| | ||| |||||| |||||||||||| |||||||| ||||||||||||||||| || |||| |
|
|
| T |
7360472 |
gcatccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtggtgtc |
7360373 |
T |
|
| Q |
201 |
cat |
203 |
Q |
| |
|
||| |
|
|
| T |
7360372 |
cat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 14688570 - 14688368
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||| |||||||| || || ||||||||||| ||| |
|
|
| T |
14688570 |
caaaagagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagcca |
14688471 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtc |
200 |
Q |
| |
|
||||||||||| ||||| | |||||||| || |||||| ||||| |||||| ||||||||||| ||||| || ||||||||||||||||| ||||||| |
|
|
| T |
14688470 |
gcatccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtgatgtc |
14688371 |
T |
|
| Q |
201 |
cat |
203 |
Q |
| |
|
||| |
|
|
| T |
14688370 |
cat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10787223 - 10787425
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| | |||| | ||| ||||| |||||||||||||||||| |||||||| || ||||||||||| ||| |
|
|
| T |
10787223 |
caaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagcca |
10787322 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtc |
200 |
Q |
| |
|
|| ||||| || |||| | ||| |||| ||||||||||||||| |||||| || |||||||| |||||||| |||| |||||||||||| ||||||| |
|
|
| T |
10787323 |
gcgtccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtgatgtc |
10787422 |
T |
|
| Q |
201 |
cat |
203 |
Q |
| |
|
||| |
|
|
| T |
10787423 |
cat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 10158004 - 10158195
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| || ||||||| |||||| | |||||||||||||||||||| || ||| || ||||| || ||| |||| || ||| |
|
|
| T |
10158004 |
caaaagagaccaaaagtcattgaaaagttcagttatatcaggagagataccgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagcca |
10158103 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
||||||| || ||||| ||| || ||||| ||||||||||||||||||| ||| |||||| ||| |||||||||||||| || ||||| |
|
|
| T |
10158104 |
tcatccatagcattcttgagcgaatacttgacagtaggaatgcatggctcaacatctagcatgtgttgagtacatctcaaaatacaaaacat |
10158195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 38979 - 39170
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| || |||||||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
38979 |
caaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaacca |
39078 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||||||||||||||| | ||||| ||||||||| || |||||||||||||| ||||| |
|
|
| T |
39079 |
gcatccatagcgttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacat |
39170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 32759 - 32568
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| || |||||||| ||||||| ||||||||||||||||| ||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
32759 |
caaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaacca |
32660 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||||||||||||||| | ||||| ||||||||| || |||||||||||||| ||||| |
|
|
| T |
32659 |
gcatccatagcgttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacat |
32568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 3953 - 3762
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| ||||||| ||||| ||||| ||||| ||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
3953 |
caaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacagaacca |
3854 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
3853 |
gcatccatggcgttcttaagcagacgcttgatggtaggaatgcatggctcaacatccagcatgaattaagtgcatctcaaaatgcaaaacat |
3762 |
T |
|
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Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13284482 - 13284291
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| |||||||||| ||||||| ||||||||||||||||||||||||| ||| || ||||| |||||| ||||||| ||| |
|
|
| T |
13284482 |
caaaagagaccaaaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagcca |
13284383 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|| ||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |||||| ||| || ||||||||||| || ||||| |
|
|
| T |
13284382 |
gcgtccatagcgttcctaagcaaacgcttgacggtaggaatgcatggctcaacatctagcatgtgttgagtgcatctcaaaatacaaaacat |
13284291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 14562340 - 14562149
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| || ||||||| | ||||| ||||||||||||| ||||||||||| ||| || ||||| |||||| ||||||| ||| |
|
|
| T |
14562340 |
caaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagcca |
14562241 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|| ||||| || ||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||| || ||||| |
|
|
| T |
14562240 |
gcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgtgttgagtacatctcaaaatacaaaacat |
14562149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 14742018 - 14741948
Alignment:
| Q |
53 |
tcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttcttaagcaa |
123 |
Q |
| |
|
|||||||||||||||| || || |||||||| ||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
14742018 |
tcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcgtttctaagcaa |
14741948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1730041 - 1730243
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| | |||| | ||| | ||| |||| ||||||||||||| |||||||| || ||||||||||| ||| |
|
|
| T |
1730041 |
caaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagcca |
1730140 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacatatgatgtc |
200 |
Q |
| |
|
|| ||||| || ||||| |||||||||| |||||||||||| || |||||| | ||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
1730141 |
gcgtccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatgatgtc |
1730240 |
T |
|
| Q |
201 |
cat |
203 |
Q |
| |
|
||| |
|
|
| T |
1730241 |
cat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 28688 - 28879
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || ||| |||||||||| |||||| ||||||||||||||||||||||||| ||| || ||||| |||||| | ||||| ||| |
|
|
| T |
28688 |
caaaagagaccaaaagtcaatgaagagttcagtggtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagcca |
28787 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|| ||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||| || ||||| |
|
|
| T |
28788 |
gcgtccatagcgttcctaagcaaacgcttgacggtaggaatgcatggctcaacatctagcatgaattgagtgcatctcaaaatacaaaacat |
28879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 13675 - 13823
Alignment:
| Q |
44 |
gtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgttcttaagcaaacctttgacggtaggaatgc |
143 |
Q |
| |
|
||||||||||||| ||||||||||| ||| || ||||| |||||| ||||||| ||||| ||||| || ||| ||||||||| |||||||||||||||| |
|
|
| T |
13675 |
gtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgc |
13774 |
T |
|
| Q |
144 |
atggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||| || ||||| |
|
|
| T |
13775 |
atggctcaacatccagcatgtgttgagtacatctcaaaatacaaaacat |
13823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 19471 - 19662
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| || ||||||| | ||||| ||||||||||||| |||| |||| | ||| || ||||| |||||| ||||||| ||| |
|
|
| T |
19471 |
caaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccatcagaattacatcaaagtaaagagcgctcacagagcca |
19570 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|| ||||| || || ||||||||| ||||||||| ||||||||||||||| |||||| ||| ||| |||||||||||||| || ||||| |
|
|
| T |
19571 |
gcgtccatagcatttctaagcaaacgcttgacggtacgaatgcatggctcaacatccagaatgtgttgagtacatctcaaaatacaaaacat |
19662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 36053 - 36244
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||| ||| || ||||| |||||| | || |||||| |
|
|
| T |
36053 |
caaaagagaccagaagtcattgaagagttcagtgatatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaacca |
36152 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|| ||||| || ||| ||||||||| |||||| ||||||||||||||||||| ||| |||||| ||| || ||||| ||||| || ||||| |
|
|
| T |
36153 |
gcgtccatagcattcctaagcaaacgtttgacagtaggaatgcatggctcaacatctagcatgtgttgagtgcatctaaaaatacaaaacat |
36244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 12390 - 12199
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| || ||||||| ||||||| |||||| |||||||||||||||||| ||| | ||||| |||||| ||||||| ||| |
|
|
| T |
12390 |
caaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagcca |
12291 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|| ||||| || ||| |||| |||| |||| |||||||||||||||||||| |||||||||| ||| || ||||||||||| || ||||| |
|
|
| T |
12290 |
gcgtccatagcattcctaagaaaacgcttgatggtaggaatgcatggctcaacatccagcatgtgttgagtgcatctcaaaatacaaaacat |
12199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 18141 - 17950
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| || ||||||| ||||||| |||||| |||||||||||||||||| ||| | ||||| |||||| ||||||| ||| |
|
|
| T |
18141 |
caaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagcca |
18042 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcatgaattgggtacatctcaaaatgcagaacat |
192 |
Q |
| |
|
|| ||||| || ||| |||| |||| |||| |||||||||||||||||||| |||||||||| ||| || ||||||||||| || ||||| |
|
|
| T |
18041 |
gcgtccatagcattcctaagaaaacgcttgatggtaggaatgcatggctcaacatccagcatgtgttgagtgcatctcaaaatacaaaacat |
17950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 19030281 - 19030120
Alignment:
| Q |
1 |
caaaagagaccagaaatcatgaaagagttcagcagtatcagatgtgataccgtcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaacca |
100 |
Q |
| |
|
|||||||||||| || |||| |||||||||| | ||||| || || |||||||| |||||||||| ||| || || ||||| ||| || |||| ||| |
|
|
| T |
19030281 |
caaaagagaccaaaagtcattgaagagttcagtggcatcaggagtaatgccgtcaagtgccctcagcattacatcaaaatagagtgcgctcgcagagcca |
19030182 |
T |
|
| Q |
101 |
gcatccatggcgttcttaagcaaacctttgacggtaggaatgcatggctcaatatccagcat |
162 |
Q |
| |
|
|||||||| | ||| |||| |||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
19030181 |
gcatccataacattcctaagaaaacgcttgacggtaggaatgcatggctcaacatctagcat |
19030120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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