View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7221_low_8 (Length: 410)

Name: NF7221_low_8
Description: NF7221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7221_low_8
NF7221_low_8
[»] scaffold0536 (2 HSPs)
scaffold0536 (18-357)||(6497-6836)
scaffold0536 (20-322)||(10514-10816)
[»] chr4 (6 HSPs)
chr4 (20-357)||(48912331-48912668)
chr4 (20-357)||(48958000-48958337)
chr4 (20-357)||(48965185-48965519)
chr4 (140-357)||(48961267-48961486)
chr4 (131-245)||(48974085-48974199)
chr4 (173-216)||(48951252-48951295)
[»] chr6 (2 HSPs)
chr6 (140-323)||(12590192-12590375)
chr6 (152-318)||(12483492-12483658)
[»] chr8 (1 HSPs)
chr8 (97-357)||(12641467-12641727)
[»] chr2 (3 HSPs)
chr2 (20-357)||(13448219-13448553)
chr2 (20-357)||(13440056-13440390)
chr2 (21-357)||(13454691-13455024)
[»] chr7 (1 HSPs)
chr7 (20-357)||(3417516-3417850)
[»] chr5 (2 HSPs)
chr5 (18-315)||(12540539-12540836)
chr5 (268-353)||(28385438-28385520)


Alignment Details
Target: scaffold0536 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 6836 - 6497
Alignment:
Q  18 catccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6836 catccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccac 6737  T
Q  118 caccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6736 caccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctca 6637  T
Q  218 acagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttct 317  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6636 acagtggaattccacccacaatgcgtcataaacgcacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttct 6537  T
Q  318 tctttccgatatttctctcttcgaatccctttggcaacca 357  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6536 tctttccgatatttctctcttcgaatccctttggcaacca 6497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 10816 - 10514
Alignment:
Q  20 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 119  Q
    |||||||||||| ||||| |||||||||||| ||||||||| |||| ||||||| ||||||||||||||  | | | ||||||  |||| |||||  ||     
T  10816 tccatcaatctcttcacaaccttctcaataccatccctcccgaccaacttctctttctccccaataccaactaagcaccactctactgcacccacttccc 10717  T
Q  120 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 219  Q
    ||||||| |  ||||| || ||||||||||| |||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||| ||||| ||    
T  10716 ccccaatcccccgcacttgcgttatcaacttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccac 10617  T
Q  220 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 319  Q
     |||||||||||||||||||| |||||||||||||||||| |  ||||||| | ||||||||| || || ||||||||| ||||||||||||||||||||    
T  10616 ggtggaattccacccacaatgtgtcataaacgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttc 10517  T
Q  320 ttt 322  Q
    |||    
T  10516 ttt 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 48912668 - 48912331
Alignment:
Q  20 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 119  Q
    |||||||||| | ||||| ||||||||||| |||||||||  |||||||||||||| ||||||||||||||||  ||||| || | ||| || ||| |||    
T  48912668 tccatcaatcgcttcacaaccttctcaatattatccctccaaaccaccttctctctttccccaataccagttgtgctccattccgttgcaccgacctcca 48912569  T
Q  120 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 219  Q
    ||||||| |   ||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||    
T  48912568 ccccaatcccatgcacctgtgttatcaacttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaac 48912469  T
Q  220 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 319  Q
    ||||||||||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||||| ||||||||||||||| ||||||||| | ||||||||    
T  48912468 agtggaattccacccacaatgtgtcataaatgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttc 48912369  T
Q  320 tttccgatatttctctcttcgaatccctttggcaacca 357  Q
    ||||||||| |||||||||| || ||||||||||||||    
T  48912368 tttccgataattctctcttcaaacccctttggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 48958000 - 48958337
Alignment:
Q  20 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 119  Q
    |||||||||||| |||||||||| || ||||||||  | | ||| | ||||| | ||||| ||| |||  ||  || |||||| | ||| || ||| |||    
T  48958000 tccatcaatctcttcacagccttttctatactatctttactcacaatcttctgtttctcctcaaaaccgtttacacaccactctgttgcaccaacctcca 48958099  T
Q  120 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 219  Q
    ||||||||| |||||| |  ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| ||    
T  48958100 ccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcattggaacccccgcgctaacagcctccac 48958199  T
Q  220 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 319  Q
    |||||| |||||||| ||||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||| ||||| |||||||| |||||||| ||||||    
T  48958200 agtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggcccaccccctaatgatcaaacctttcttc 48958299  T
Q  320 tttccgatatttctctcttcgaatccctttggcaacca 357  Q
    ||||| || ||||||||||||||||| || ||||||||    
T  48958300 tttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 48965185 - 48965519
Alignment:
Q  20 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 119  Q
    |||||||||||||||||||||||||| || ||||| || | ||||| ||||||||| ||  ||| ||||||  ||| ||| || | ||| || ||  |||    
T  48965185 tccatcaatctcctcacagccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttcca 48965284  T
Q  120 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 219  Q
    | ||||| | |||||| | ||||||||  ||||| ||||| ||||||||||| ||    ||||| || |||||||||||||| |||| ||||||||| ||    
T  48965285 ctccaatccctcgcacttctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccac 48965384  T
Q  220 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 319  Q
     ||||| ||||| |||||||| |||||||| |||||||||||   |||||||| ||||| ||| || ||||||||||||||||||||||||||   ||||    
T  48965385 tgtggagttccaaccacaatgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacc---cttc 48965481  T
Q  320 tttccgatatttctctcttcgaatccctttggcaacca 357  Q
    ||||| || ||||||||||||||||||||||| |||||    
T  48965482 tttccaatgtttctctcttcgaatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 140 - 357
Target Start/End: Original strand, 48961267 - 48961486
Alignment:
Q  140 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaa--ttccacccaca 237  Q
    ||||||||||| || ||||| ||||||||||| || || ||||| || ||||| || | |||||||||| |||||||||  |||||   |||||||| ||    
T  48961267 gttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcattgggatccctgcactaccagcctcaatggtggagagttccacccgca 48961366  T
Q  238 atgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctct 337  Q
    ||||||||||||| ||||||| ||| |||||| ||  |||||||||||||| ||||| ||| |||| |||||||||||||||||| | || |||||||||    
T  48961367 atgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctct 48961466  T
Q  338 tcgaatccctttggcaacca 357  Q
    || ||||| || ||||||||    
T  48961467 tcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 48974085 - 48974199
Alignment:
Q  131 cgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattcc 230  Q
    |||||||| ||||||||||| || ||||| ||||||||  | ||||| |||||||||||||| ||||||||||||||||| || || || ||||| ||||    
T  48974085 cgcacctgagttatcaacttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttcc 48974184  T
Q  231 acccacaatgcgtca 245  Q
    |||| ||||| ||||    
T  48974185 acccgcaatgtgtca 48974199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 48951252 - 48951295
Alignment:
Q  173 tgcaccggccacgtgatcatcggaacccctgcactaacagcctc 216  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  48951252 tgcaccggccacgtgatcatcggaacccctacactaatagcctc 48951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 140 - 323
Target Start/End: Complemental strand, 12590375 - 12590192
Alignment:
Q  140 gttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaat 239  Q
    ||||||||||| ||||||||||| ||||| || | ||  ||||| |||||||||||||  || |||||||| ||||| ||   ||||||||| |||||||    
T  12590375 gttatcaacttctcattgtaaaaatgttcaccattcaatggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaat 12590276  T
Q  240 gcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttc 323  Q
    | ||||||||||| ||||| || |||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  12590275 gtgtcataaacgcgcccactgcattgtggctcataatcattacttgtggggcccaacccctaatgatcaaacccttcttctttc 12590192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 152 - 318
Target Start/End: Complemental strand, 12483658 - 12483492
Alignment:
Q  152 tcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 251  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||| || || |||   |||||||| ||||| || |||||||| |    
T  12483658 tcattgtaaaaatgttcaccgtgaaccggccacgtgatcattggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatg 12483559  T
Q  252 cacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttctt 318  Q
    ||||||| ||   ||||||||||||||  || ||||| ||||| ||||| || || |||||| ||||    
T  12483558 cacccactgcagggtggctcaaaatcagtacctgtggtgcccaccccctgatgattaaacccatctt 12483492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 97 - 357
Target Start/End: Complemental strand, 12641727 - 12641467
Alignment:
Q  97 ccactcagctgcccccaccaccaccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcgga 196  Q
    |||||| | ||| |||||| |||||||||| | ||||||    ||||||| ||| ||||| || || |||||||| ||||| |||||||||||||| |||    
T  12641727 ccactctgttgcacccacctccaccccaatccttcgcacaacagttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattgga 12641628  T
Q  197 acccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaac 296  Q
    | |||||||||||||||||| ||   ||| ||| |||| ||||||||||| || |||||||||||   |||||| |||||||| |||||||| |||||      
T  12641627 atccctgcactaacagcctctaccaaggagttcgacccgcaatgcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccact 12641528  T
Q  297 ccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaacca 357  Q
    ||||||| || ||||| ||||| ||| | | |||||||||||||||||| || ||||||||    
T  12641527 ccctaatgataaaacctttcttattttcaacatttctctcttcgaatcctttaggcaacca 12641467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 13448219 - 13448553
Alignment:
Q  20 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 119  Q
    |||||||||||||| ||||||||||| || ||||| || | ||| | ||||| ||||||| | | |||| | | || ||| || | ||| || ||  | |    
T  13448219 tccatcaatctccttacagccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaa 13448318  T
Q  120 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 219  Q
    | ||||||| ||| |  ||||||||||  || |||||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||||||| ||    
T  13448319 ctccaattcctcggaattgtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctac 13448418  T
Q  220 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 319  Q
     || || |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||    
T  13448419 ggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttc 13448518  T
Q  320 tttccgatatttctctcttcgaatccctttggcaacca 357  Q
       ||||||||||||||||| |||||||| || |||||    
T  13448519 ---ccgatatttctctcttcaaatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 13440056 - 13440390
Alignment:
Q  20 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 119  Q
    |||||||||||||||||||||||||| ||  ||||||| | ||||| ||||||||||||| ||| |||| |   || ||| || | ||| || ||  |||    
T  13440056 tccatcaatctcctcacagccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttcca 13440155  T
Q  120 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 219  Q
    | ||||||| ||| |  ||||||| ||  || || ||||| ||||| ||||| || ||||||||||| ||||| ||||| || |||||||||| ||| ||    
T  13440156 ctccaattcctcgaaattgtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctac 13440255  T
Q  220 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 319  Q
    | | || |||| ||| ||||||||||||||  | ||||| ||   ||||||||| ||| |||||||||| ||||||||| |||| ||||||||| || ||    
T  13440256 aattgagttccccccgcaatgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctc 13440355  T
Q  320 tttccgatatttctctcttcgaatccctttggcaacca 357  Q
       |  || |||||||||||||||||||||||||||||    
T  13440356 ---ctaatgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 13454691 - 13455024
Alignment:
Q  21 ccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccaccac 120  Q
    ||||||||||||||||||||||||| || |||||  | | ||||| ||||||||||||| ||| |||| ||| || ||| || | ||| || ||  | |     
T  13454691 ccatcaatctcctcacagccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaat 13454790  T
Q  121 cccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaaca 220  Q
     ||||||| ||| || |||||||| |  || || ||||| ||||| ||||| || || |||||||| ||||| ||||| ||    ||||||||||| ||     
T  13454791 tccaattcctcgaacttgtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacg 13454890  T
Q  221 gtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttct 320  Q
     | || |||| ||| ||||||||||||||  | ||||| ||   ||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||    
T  13454891 attgagttccccccgcaatgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttct 13454990  T
Q  321 ttccgatatttctctcttcgaatccctttggcaacca 357  Q
       |||| ||| ||||||| |||||||| ||||||||    
T  13454991 ---cgatgtttttctcttcaaatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 3417850 - 3417516
Alignment:
Q  20 tccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccacca 119  Q
    ||||||||||||||||  |||||||| ||   ||| || | ||||| ||||| ||||||||||||||||  || || ||| || | ||| || ||  |||    
T  3417850 tccatcaatctcctcattgccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttcca 3417751  T
Q  120 ccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctcaac 219  Q
    | ||||||| ||| || |||||||| |  || |||||| | ||||| ||||| ||  |||||||||| ||||| ||||| ||||||| ||||||||||||    
T  3417750 ctccaattcctcggacttgtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaac 3417651  T
Q  220 agtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttc 319  Q
    |   || |||| ||||||||| ||||||||  | || || ||   ||||||||| |||  ||| ||||| |||||||||||||  ||||||||   ||||    
T  3417650 aaatgagttccccccacaatgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacc---cttc 3417554  T
Q  320 tttccgatatttctctcttcgaatccctttggcaacca 357  Q
    ||||| || |||||||| || |||||||| ||||||||    
T  3417553 tttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 12540539 - 12540836
Alignment:
Q  18 catccatcaatctcctcacagccttctcaatactatccctccccaccaccttctctctctccccaataccagttgaactccactcagctgcccccaccac 117  Q
    |||||||||||||||||| ||||||||| || | ||| || || |||| ||||| |||||||||| ||||| ||| || ||| || | ||| || ||  |    
T  12540539 catccatcaatctcctcatagccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttc 12540638  T
Q  118 caccccaattcgtcgcacctgtgttatcaacttttcattgtaaaattgttctccgtgcaccggccacgtgatcatcggaacccctgcactaacagcctca 217  Q
     || ||||||| ||| ||||||||||| |  || || ||| | || || ||||| ||   ||||||||| ||||| ||||| || |||| |||||||||     
T  12540639 tactccaattcctcggacctgtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctct 12540738  T
Q  218 acagtggaattccacccacaatgcgtcataaacgcacccacagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaaccctt 315  Q
    ||| | || || | ||||||||| ||||||||  | ||||| ||   ||||||||| ||| |||| ||||| |||||||||||||| |||||||||||    
T  12540739 acaattgagtttcccccacaatgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaaccctt 12540836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 28385438 - 28385520
Alignment:
Q  268 gctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggca 353  Q
    |||||| |||| ||||||||| ||||||||||| || || |||||   ||||||||| || |||||||| || |||||||||||||    
T  28385438 gctcaatatcagaacttgtggggcccaacccctgattatgaaacc---cttctttccaatgtttctctcctcaaatccctttggca 28385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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