View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7222_low_2 (Length: 335)
Name: NF7222_low_2
Description: NF7222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7222_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 40942792 - 40943097
Alignment:
| Q |
15 |
caacacacataataatattataataattgtaaatgtatgtagcctccaaattagaaacctctatataaagcctaactacttccttcacaaatcaggaaat |
114 |
Q |
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| T |
40942792 |
caacacacataataatattataataattgtaaatgtatgtagcctccaaattagaaacctctatataaagcctaactacttccttcacaaatcaggaaat |
40942891 |
T |
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| Q |
115 |
tcacaactctaatattcatttctttcataatcattagaatttccattgtttcataattctaggtaccaccacacaacaaaattaaggaacattaattatt |
214 |
Q |
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| T |
40942892 |
tcacaactctaatattcatttctttcataatcattagaatttccattctttcataattctaggtaccaccacacaacaaaattaaggaacattaattatt |
40942991 |
T |
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| Q |
215 |
atcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatgaatcattctgtttgattcatgctaagaataataacatgaaagtga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40942992 |
atcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatgaatcattctgtttgattcatgctaagaataataacatgaaagtga |
40943091 |
T |
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| Q |
315 |
atgaag |
320 |
Q |
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|||||| |
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| T |
40943092 |
atgaag |
40943097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 93 - 320
Target Start/End: Original strand, 40969957 - 40970192
Alignment:
| Q |
93 |
cttccttcacaaatcaggaaattcacaactctaatattcattt----ctttcataatcattagaatttccattgtttca----taattctaggtaccacc |
184 |
Q |
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| T |
40969957 |
cttccttctcatctcaggaaatttacaactctaatattcatttatttctttcacaatcatttggatttccattctctcaaaattaattctaggtaccacc |
40970056 |
T |
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| Q |
185 |
acacaacaaaattaaggaacattaattattatcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatgaatcattctgtttga |
284 |
Q |
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| T |
40970057 |
acacaacaaaattaaggaacattaattattatcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatgaatcattctgtttga |
40970156 |
T |
|
| Q |
285 |
ttcatgctaagaataataacatgaaagtgaatgaag |
320 |
Q |
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| T |
40970157 |
ttcatgctaagaataataacatgaaagtgaatgaag |
40970192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 51 - 320
Target Start/End: Original strand, 40956139 - 40956416
Alignment:
| Q |
51 |
atgtagcctccaaattagaaacctctatataaagcctaactacttccttcacaaatcaggaaattcacaactctaatatt---catttctttcataatca |
147 |
Q |
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| T |
40956139 |
atgtagcctccaaa--acaaacctctatataaagctcaattacttccttctcatctcaggaaattcacaactctaatattattcctttatttcataatta |
40956236 |
T |
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| Q |
148 |
ttagaatttccattgtttcataattctaggtaccaccacacaacaaaattaaggaacattaattattat------caat-taagat-atggaaacaatat |
239 |
Q |
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|| ||||||||||| | || |||||||| ||||||||| ||||||| ||||| ||||||||||| ||| |||| |||||| ||||||||||||| |
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| T |
40956237 |
tttgaatttccattctctctaaattctagctaccaccactcaacaaa-ttaagcaacattaattactattagtatcaatataagatcatggaaacaatat |
40956335 |
T |
|
| Q |
240 |
cagcagctatcacaaaaaacagtgccaatgaatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaag |
320 |
Q |
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| T |
40956336 |
cagcagctatcacaaaaaacagtgccaatgaatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaag |
40956416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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