View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7222_low_3 (Length: 293)
Name: NF7222_low_3
Description: NF7222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7222_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 16982525 - 16982238
Alignment:
| Q |
1 |
tactcaacagactatttcatgagctgtgcagaattgataatattgctacatttgtgttcaactaatgcccttcaaaagcttagtggattcagataatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16982525 |
tactcaacagactatttcatgagctgtgcagaattgataatattgctacatttgtgttcaactaatgccctttaaaagcttagtggattcagataatttt |
16982426 |
T |
|
| Q |
101 |
gggtctatagtctatacagcttgctaatgtttgattttcacatca-------tgaaattttaacctgtctgatgacgaacaattcttgtttccagactat |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
16982425 |
gggtctatagtctatacagcttgctaatgtttgattttcacatcagctaagttgaaattttaacctgtctgatgatgaaaaattcttgtttccagactat |
16982326 |
T |
|
| Q |
194 |
gtcaaggtcattgaggatatttccacagttcaatcagtaattctaagttcacagctgaaagaaatattgtgtaatgtgaattctgatg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16982325 |
gtcaaggtcattgaggatatttccacagttcaatcagtaattataagttcacagctgaaagaaatattgtgtaatgtgaattctgatg |
16982238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University