View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7222_low_6 (Length: 214)
Name: NF7222_low_6
Description: NF7222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7222_low_6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 25585185 - 25585395
Alignment:
| Q |
4 |
cttttggcatccctagatgctgctagagctcaacttagtgaaagccctgatactgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctc |
103 |
Q |
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| T |
25585185 |
cttttggcatccctagatgctgccagagctcaacttagtgaaagccctgatactgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctc |
25585284 |
T |
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| Q |
104 |
ttaaacgattccctggaatctcagtgcttgagaattctagctttccgaccattcgtgcaattgatccattgcggcttactgtaggtttctgggagcttgg |
203 |
Q |
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| T |
25585285 |
ttaaacgattccctggaatcttagtgcttgagaattctagctttctgaccattcgtgcaattgatccattgcggcttactgtaggtttttgggagcttgg |
25585384 |
T |
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| Q |
204 |
tttatcaggtt |
214 |
Q |
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||||||||||| |
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| T |
25585385 |
tttatcaggtt |
25585395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 25590068 - 25590278
Alignment:
| Q |
4 |
cttttggcatccctagatgctgctagagctcaacttagtgaaagccctgatactgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctc |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| | | |
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| T |
25590068 |
cttttggcatccctagatgctgctagagctcaacttagtgaaagccctgctattgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgc |
25590167 |
T |
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| Q |
104 |
ttaaacgattccctggaatctcagtgcttgagaattctagctttccgaccattcgtgcaattgatccattgcggcttactgtaggtttctgggagcttgg |
203 |
Q |
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| T |
25590168 |
taaaacgaatccctggcgtctcagtgcttgagaattcaagctttccaaattttcccgcatttgatccattccggcttactgtaggcttttgggagcttgg |
25590267 |
T |
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| Q |
204 |
tttatcaggtt |
214 |
Q |
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||||||||||| |
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| T |
25590268 |
tttatcaggtt |
25590278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 25599720 - 25599930
Alignment:
| Q |
4 |
cttttggcatccctagatgctgctagagctcaacttagtgaaagccctgatactgtattcaaccaagcgattgaattagcaaatgaagcaaagtcctctc |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||| | | |
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| T |
25599720 |
cttttggcatccctagatgctgctagagctcaacttagtgaaagccctgctattgtatttaaacaagcgattgaattagcaaatgaagcaaagtttttgc |
25599819 |
T |
|
| Q |
104 |
ttaaacgattccctggaatctcagtgcttgagaattctagctttccgaccattcgtgcaattgatccattgcggcttactgtaggtttctgggagcttgg |
203 |
Q |
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| |||||| ||||||| ||||||||||||||||||| |||||||| | ||| ||| |||||||||| |||||||||||||| || ||||||||||| |
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| T |
25599820 |
taaaacgaatccctggcgtctcagtgcttgagaattcaagctttccaaattttcccgcatttgatccattccggcttactgtaggcttttgggagcttgg |
25599919 |
T |
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| Q |
204 |
tttatcaggtt |
214 |
Q |
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||||||||||| |
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| T |
25599920 |
tttatcaggtt |
25599930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 48466242 - 48466380
Alignment:
| Q |
1 |
ctgcttttggcatccctagatgctgctagagctcaacttagtgaaagccctgatactgtattcaaccaagcgattgaattagcaaatgaagcaaagtcct |
100 |
Q |
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|||||| |||||||||| |||||||||| |||||| |||||||||| || | | |||||||||||||||||| ||||||| |||||||||||||| || |
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| T |
48466242 |
ctgcttatggcatccctgtatgctgctagcgctcaatttagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagttct |
48466341 |
T |
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| Q |
101 |
ctcttaaacgattccctggaatctcagtgcttgagaatt |
139 |
Q |
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| T |
48466342 |
tgattaaacgagtcccgggaatttcagtgctcgagaatt |
48466380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 42077015 - 42077153
Alignment:
| Q |
1 |
ctgcttttggcatccctagatgctgctagagctcaacttagtgaaagccctgatactgtattcaaccaagcgattgaattagcaaatgaagcaaagtcct |
100 |
Q |
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|||||| |||||||||| ||| ||||||||||||||||||||||||| || | | |||||||||||||||||| ||||||| |||||||||||||| || |
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| T |
42077015 |
ctgcttatggcatccctggatactgctagagctcaacttagtgaaagtcccaagaatgtattcaaccaagcgatcgaattagaaaatgaagcaaagtgct |
42077114 |
T |
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| Q |
101 |
ctcttaaacgattccctggaatctcagtgcttgagaatt |
139 |
Q |
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| T |
42077115 |
tgcttaaacgaatctctggcatctcagtgcttgagaatt |
42077153 |
T |
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