View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7223_high_1 (Length: 787)

Name: NF7223_high_1
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7223_high_1
NF7223_high_1
[»] chr1 (2 HSPs)
chr1 (22-484)||(49247636-49248101)
chr1 (213-259)||(30210197-30210243)
[»] chr5 (6 HSPs)
chr5 (484-775)||(8725485-8725771)
chr5 (630-775)||(31698746-31698891)
chr5 (484-574)||(31698917-31699007)
chr5 (483-576)||(42838793-42838886)
chr5 (202-254)||(7010126-7010178)
chr5 (575-617)||(31698905-31698946)
[»] chr3 (3 HSPs)
chr3 (630-775)||(34279048-34279190)
chr3 (482-588)||(34278783-34278888)
chr3 (483-576)||(7237094-7237185)
[»] scaffold0057 (2 HSPs)
scaffold0057 (515-574)||(41931-41990)
scaffold0057 (578-616)||(41919-41957)
[»] chr6 (1 HSPs)
chr6 (512-576)||(22502545-22502609)
[»] chr4 (1 HSPs)
chr4 (207-259)||(35075167-35075219)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 22 - 484
Target Start/End: Complemental strand, 49248101 - 49247636
Alignment:
Q  22 aaactttactctaaatagtatctatcaggaagaaaacttcatgacgtggttgcatatcaaagacaatgagttgattcccgatcttcacgccacttaaaca 121  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49248101 aaactttactctaaatagtatctatcaggaagtaaacttcatgacgtggttgcatatcaaagacaatgagttgactcccgatcttcacgccacttaaaca 49248002  T
Q  122 aaacaatcgatagtatagtatag-----tatatactcgcaactaattgggataagaaacttcctatcctcgatttttagcgacataataggatagagaca 216  Q
    |||||||| ||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49248001 aaacaatctatagtatagtatagtatagtatatactcacaactaattgggataagaaacttcctatcctcgatttttagcgacatgataggatagagaca 49247902  T
Q  217 taataacatttatcctatcacctgtttgatacacacataataac-nnnnnnnnntatatttatttacagagtattcaaaatctaaagttaactgtctaat 315  Q
    ||||||||||||||||||||| ||||||||||||||||||||||           | | |||||||||||||||||||||||||||||||||||||||||    
T  49247901 taataacatttatcctatcacgtgtttgatacacacataataacaaaaaaaaaaaaaaattatttacagagtattcaaaatctaaagttaactgtctaat 49247802  T
Q  316 tgtttcttgagaagttgttaccgtccatagcacgacaacgagatttgaactactatagtactgttggtacaattaagtccacacaaaatagttatcacaa 415  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49247801 tgtttcttgacaagttattaccgtccatagcacgacaacgagatttga---actatagtactgttggtacaattaagtccacacaaaatagttatcacaa 49247705  T
Q  416 ccgagtggtgattactaattccaatgtagctaatgatattaaacaaattaagaataaccaatcaaatta 484  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||    
T  49247704 ccgagtggtgattactaattccaatgtagctaatgatattaaataagttaagaaaaaccaatcaaatta 49247636  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 30210243 - 30210197
Alignment:
Q  213 gacataataacatttatcctatcacctgtttgatacacacataataa 259  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  30210243 gacatgataacatttatcctatcacttgtttgatacacacatgataa 30210197  T

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Target: chr5 (Bit Score: 169; Significance: 3e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 484 - 775
Target Start/End: Original strand, 8725485 - 8725771
Alignment:
Q  484 agagaggtgataggtaaacatccccatgtggcaaatccctctatacaccccctatgtggcaaatatttggcattaataaataataaatgttaatatttga 583  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  8725485 agagaggtgataggtaaacatccccatgtggcaaacccctctatacacccc-tatgtggaaaatattttgcattaataaataataaatgttaatatttga 8725583  T
Q  584 cattaacaaataataaatgttccatttgagaattnnnnnnnnnnnttgaaaaggaaatgatgtctcagttcttcttcccgcacgctctctcccccgccaa 683  Q
     ||||| |||||||||||||||||||||||||||            |||||||||||  ||||||| |   |||||||| || ||||||||| |||||||    
T  8725584 tattaataaataataaatgttccatttgagaattaaaaaaaaaaa-tgaaaaggaaagaatgtctcgg---ttcttccctcatgctctctcctccgccaa 8725679  T
Q  684 acagtcctctctctcctccaccaccgccaccagcccacttccgttcccggtgacggcagcggcggctatcaaatccccactgttttcatctc 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||    
T  8725680 acagtcctctctctcctccaccaccgccaccagcccacttccgttcccggtgatggcagcggcgactaccaaatccccactattttcatctc 8725771  T

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Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 630 - 775
Target Start/End: Complemental strand, 31698891 - 31698746
Alignment:
Q  630 tgaaaaggaaatgatgtctcagttcttcttcccgcacgctctctcccccgccaaacagtcctctctctcctccaccaccgccaccagcccacttccgttc 729  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||    
T  31698891 tgaaaaggaaatgatgtctcagttcttcttcccgcacgctctctcccccgccaaactgtcctctctctcctccaccactggcaccagcccacttccgttc 31698792  T
Q  730 ccggtgacggcagcggcggctatcaaatccccactgttttcatctc 775  Q
    |||||||||||||||||||| | |||||||||||||||||||||||    
T  31698791 ccggtgacggcagcggcggccaccaaatccccactgttttcatctc 31698746  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 484 - 574
Target Start/End: Complemental strand, 31699007 - 31698917
Alignment:
Q  484 agagaggtgataggtaaacatccccatgtggcaaatccctctatacaccccctatgtggcaaatatttggcattaataaataataaatgtt 574  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31699007 agagaggtgataggtaaacatcctcatgtggcaaacccctctatacaccccctatgtggcaaatatttggcattaacaaataataaatgtt 31698917  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 576
Target Start/End: Complemental strand, 42838886 - 42838793
Alignment:
Q  483 tagagaggtgataggtaaacatccccatgtggcaaatccctctatacaccccctatgtggcaaatatttggcattaataaataataaatgttaa 576  Q
    ||||||| |||||  ||||||| |  || ||||||| | |||| |||||||| ||||||||| | ||||  |||||||||||||||||||||||    
T  42838886 tagagagctgatacataaacattcgtatctggcaaacctctctctacaccccttatgtggcacacatttaacattaataaataataaatgttaa 42838793  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 7010126 - 7010178
Alignment:
Q  202 aataggatagagacataataacatttatcctatcacctgtttgatacacacat 254  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| | |||||||    
T  7010126 aatatgatagtgacatgataacatttatcctatcacctgtttggtgcacacat 7010178  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 575 - 617
Target Start/End: Complemental strand, 31698946 - 31698905
Alignment:
Q  575 aatatttgacattaacaaataataaatgttccatttgagaatt 617  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  31698946 aatatttggcattaacaaataataaatgttcc-tttgagaatt 31698905  T

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Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 630 - 775
Target Start/End: Original strand, 34279048 - 34279190
Alignment:
Q  630 tgaaaaggaaatgatgtctcagttcttcttcccgcacgctctctcccccgccaaacagtcctctctctcctccaccaccgccaccagcccacttccgttc 729  Q
    |||||||||||  |||||||||||||||   || || ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34279048 tgaaaaggaaaaaatgtctcagttcttc---cctcatgctctctcttccgccaaacagtcccctctctcctccaccaccgccaccagcccacttccgttc 34279144  T
Q  730 ccggtgacggcagcggcggctatcaaatccccactgttttcatctc 775  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||    
T  34279145 ccggtgatggcagcggcggctaccaaatccccactgttttcatctc 34279190  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 482 - 588
Target Start/End: Original strand, 34278783 - 34278888
Alignment:
Q  482 ttagagaggtgataggtaaacatccccatgtggcaaatccctctatacaccccctatgtggcaaatatttggcattaataaataataaatgttaatattt 581  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  34278783 ttagagaggtgataggtaaacatccccatgtggcaaacccctctatacatccc-tatgtggcaaatattttgcattaataaataataaatgttaatattt 34278881  T
Q  582 gacatta 588  Q
    || ||||    
T  34278882 gatatta 34278888  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 576
Target Start/End: Original strand, 7237094 - 7237185
Alignment:
Q  483 tagagaggtgataggtaaacatccccatgtggcaaatccctctatacaccccctatgtggcaaatatttggcattaataaataataaatgttaa 576  Q
    |||||||||||||  ||||||||   |||||||||| | ||||||||| ||| ||||||| | | ||||| |||||||||||||||||||||||    
T  7237094 tagagaggtgatacataaacatct--atgtggcaaacctctctatacatcccttatgtggtacacatttgacattaataaataataaatgttaa 7237185  T

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Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 41990 - 41931
Alignment:
Q  515 caaatccctctatacaccccctatgtggcaaatatttggcattaataaataataaatgtt 574  Q
    |||| ||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||    
T  41990 caaacccctctatacatcccctatgtggcacacatttgacattaataaataataaatgtt 41931  T

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Target: scaffold0057; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 616
Target Start/End: Complemental strand, 41957 - 41919
Alignment:
Q  578 atttgacattaacaaataataaatgttccatttgagaat 616  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  41957 atttgacattaataaataataaatgttccatttgagaat 41919  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 576
Target Start/End: Complemental strand, 22502609 - 22502545
Alignment:
Q  512 tggcaaatccctctatacaccccctatgtggcaaatatttggcattaataaataataaatgttaa 576  Q
    ||||||| | |||| |||||||| ||||||||| | ||||  |||||||||||||||||||||||    
T  22502609 tggcaaacctctctctacaccccttatgtggcacacatttaacattaataaataataaatgttaa 22502545  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 35075219 - 35075167
Alignment:
Q  207 gatagagacataataacatttatcctatcacctgtttgatacacacataataa 259  Q
    ||||| |||||||||||||||||||||| || |||||| ||||||||| ||||    
T  35075219 gatagtgacataataacatttatcctattacatgtttggtacacacatgataa 35075167  T

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