View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7223_high_14 (Length: 257)
Name: NF7223_high_14
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 33352613 - 33352371
Alignment:
| Q |
16 |
ataaccatagtgaataaaccaagaaacacgaaacatagaggttgattgaaattacctgtatggaaaatgcactnnnnnnnn-gttaagcagagtattatc |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33352613 |
ataaccttagtgaataaaccaagaaacacgaaacatagaggttgattgaaattacctgtatggaaaatgcactaaaaaaaaagttaagcagagtattatc |
33352514 |
T |
|
| Q |
115 |
ttacactaagccttatgtttgcatccatgagaaagtccaatatttctgcagtagttttcttacaatcaggagacttcatgcatttccatctccaatgcag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33352513 |
ttacactaagccttatgtttgcatccatgagaaagtccaatatttctgcagtagttttcttacaatcaggagacttcatgcatttccatctccaatgcag |
33352414 |
T |
|
| Q |
215 |
tgtcattcctcctttctcaaacgtccatgacaactgcaatatt |
257 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33352413 |
tgtcattcctcctttctcaaacgtccacgacaactgcaatatt |
33352371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 28761964 - 28761917
Alignment:
| Q |
117 |
acactaagccttatgtttgcatccatgagaaagtccaatatttctgca |
164 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||||||||||||||| |
|
|
| T |
28761964 |
acactaagccttatgtttgtatccaagagaaattccaatatttctgca |
28761917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University