View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_high_16 (Length: 239)
Name: NF7223_high_16
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33352284 - 33352061
Alignment:
| Q |
1 |
aatggtgagtggaacataatgatataaaaaatggaatattataaaattattgtacaattgatttgatattttccaatggaatatctatcggagtaaaaac |
100 |
Q |
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| T |
33352284 |
aatggtgagtggaacagaatgatatttaaaatggaatattataaaattattgtacaattgatttgatattttccaatgcaatatctatcggagtaaaaac |
33352185 |
T |
|
| Q |
101 |
aaaagtattggtaacgttttaagtaaaggtccacaactgcaacatcagttttttcactgtctctgcgactgcgattgaggccacatcaaccatatttgat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33352184 |
aaaagtattggtaaggttttaagtaaaggtccacgactgcaacatcagttttttcactgtctctgtgactgcgattgaggccacatcaaccatatttgat |
33352085 |
T |
|
| Q |
201 |
ccccaacgtaaccgcaatcattaa |
224 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
33352084 |
ccccaacgtaaccgcaaccattaa |
33352061 |
T |
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