View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_high_17 (Length: 239)
Name: NF7223_high_17
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 54383362 - 54383140
Alignment:
| Q |
12 |
ggacatcatggccaggaaacaatactaaggatcatcctggtatgattcaagtctttcttggtcacagtggaggtcatgatagtgaaggaaaccagcttcc |
111 |
Q |
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| T |
54383362 |
ggacaccatggccaggaaacaatactaaggatcatcctggtatgattcaagtctttcttggtcacagtggaggtcatgatagtgaaggaaaccagcttcc |
54383263 |
T |
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| Q |
112 |
tcgccttgtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgctctggtagagttacttgaacaaacagct |
211 |
Q |
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| T |
54383262 |
tcgccttgtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgctctggtagagttacttgaacaaacagat |
54383163 |
T |
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| Q |
212 |
tttgttatttttatgatgtccat |
234 |
Q |
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| T |
54383162 |
tttgttatttttatgatgtccat |
54383140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 35926251 - 35926151
Alignment:
| Q |
74 |
cacagtggaggtcatgatagtgaaggaaaccagcttcctcgccttgtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtg |
173 |
Q |
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| T |
35926251 |
cacagtggtgctcgtgatatcgaaggaaatgaacttcctaggctagtttatgtttctagagagaaaagaccaggataccaacatcacaagaaagcaggtg |
35926152 |
T |
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| Q |
174 |
c |
174 |
Q |
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| T |
35926151 |
c |
35926151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 14610652 - 14610716
Alignment:
| Q |
119 |
gtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgc |
183 |
Q |
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| T |
14610652 |
gtttatgtatctcgagagaagaggccaggttatgatcataacaagaaagccggtgccatgaatgc |
14610716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 14597850 - 14597789
Alignment:
| Q |
122 |
tatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgc |
183 |
Q |
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| T |
14597850 |
tatgtatctcgagagaagaggccaggttatgatcacaacaagaaagctggtgccatgaatgc |
14597789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 44377057 - 44376973
Alignment:
| Q |
110 |
cctcgccttgtttatgtatctagagagaaaaggccaggatttcaacaccacaagaaagccggtgccatgaatgctctggtagagt |
194 |
Q |
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| T |
44377057 |
cctcgtcttgtttatgtgtctcgtgaaaaaagacctggattcgaacaccacaaaaaagctggtgctatgaatgccttggtagagt |
44376973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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