View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7223_high_19 (Length: 232)

Name: NF7223_high_19
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7223_high_19
NF7223_high_19
[»] chr7 (13 HSPs)
chr7 (101-148)||(16196875-16196922)
chr7 (101-148)||(35793058-35793105)
chr7 (101-145)||(3835597-3835641)
chr7 (101-145)||(4567404-4567448)
chr7 (101-145)||(8614783-8614827)
chr7 (101-145)||(12394241-12394285)
chr7 (101-145)||(14771363-14771407)
chr7 (101-145)||(15221815-15221859)
chr7 (103-145)||(39617612-39617654)
chr7 (101-145)||(4962883-4962927)
chr7 (105-145)||(10534962-10535002)
chr7 (101-145)||(15643451-15643495)
chr7 (101-145)||(25290716-25290760)
[»] chr6 (10 HSPs)
chr6 (101-145)||(25056593-25056637)
chr6 (101-145)||(7972587-7972631)
chr6 (101-145)||(9095697-9095741)
chr6 (101-145)||(21527253-21527297)
chr6 (101-145)||(23410574-23410618)
chr6 (101-145)||(4184772-4184816)
chr6 (101-145)||(4665976-4666020)
chr6 (101-145)||(6111054-6111098)
chr6 (101-145)||(8460950-8460994)
chr6 (103-145)||(9353188-9353230)
[»] chr5 (18 HSPs)
chr5 (101-145)||(17201330-17201374)
chr5 (101-145)||(8544688-8544732)
chr5 (101-145)||(16365824-16365868)
chr5 (101-145)||(17202342-17202386)
chr5 (105-145)||(18413319-18413359)
chr5 (101-145)||(32474288-32474332)
chr5 (101-145)||(42674030-42674074)
chr5 (102-145)||(20201754-20201797)
chr5 (101-145)||(1583550-1583594)
chr5 (101-145)||(36437299-36437343)
chr5 (101-141)||(39614929-39614969)
chr5 (101-143)||(11992144-11992186)
chr5 (111-145)||(32717931-32717965)
chr5 (107-145)||(43346625-43346663)
chr5 (101-145)||(6428328-6428372)
chr5 (101-137)||(19133422-19133458)
chr5 (101-137)||(19922227-19922263)
chr5 (101-137)||(19924977-19925013)
[»] chr4 (22 HSPs)
chr4 (101-145)||(38840365-38840409)
chr4 (101-142)||(37209934-37209975)
chr4 (101-145)||(25493926-25493970)
chr4 (101-144)||(54982705-54982748)
chr4 (101-143)||(19443501-19443543)
chr4 (107-145)||(46195866-46195904)
chr4 (101-145)||(1821521-1821565)
chr4 (101-145)||(2492936-2492980)
chr4 (101-145)||(6949225-6949269)
chr4 (101-145)||(45666419-45666463)
chr4 (101-145)||(53393440-53393484)
chr4 (107-145)||(49263089-49263127)
chr4 (101-139)||(50720992-50721030)
chr4 (101-138)||(45635409-45635446)
chr4 (109-145)||(9089567-9089603)
chr4 (105-145)||(24074087-24074127)
chr4 (101-145)||(24538233-24538277)
chr4 (101-145)||(30913639-30913683)
chr4 (103-143)||(34031954-34031994)
chr4 (101-145)||(37371333-37371377)
chr4 (101-145)||(49299793-49299837)
chr4 (101-145)||(53370325-53370369)
[»] chr3 (18 HSPs)
chr3 (101-145)||(37030924-37030968)
chr3 (101-145)||(2093875-2093919)
chr3 (101-145)||(5493647-5493691)
chr3 (101-143)||(3751556-3751598)
chr3 (101-141)||(2599150-2599190)
chr3 (101-145)||(7259639-7259683)
chr3 (101-145)||(9588858-9588902)
chr3 (101-145)||(15638438-15638482)
chr3 (101-145)||(45646693-45646737)
chr3 (101-144)||(12568520-12568563)
chr3 (101-144)||(13544984-13545027)
chr3 (103-145)||(6512513-6512555)
chr3 (101-142)||(45759879-45759920)
chr3 (101-145)||(296548-296592)
chr3 (101-145)||(375838-375882)
chr3 (101-145)||(6472681-6472725)
chr3 (101-141)||(20841407-20841447)
chr3 (101-145)||(38751040-38751084)
[»] chr1 (11 HSPs)
chr1 (101-145)||(39386784-39386828)
chr1 (101-145)||(6295700-6295744)
chr1 (101-138)||(36319926-36319963)
chr1 (101-145)||(788212-788256)
chr1 (107-145)||(1674716-1674754)
chr1 (101-138)||(2655807-2655844)
chr1 (101-145)||(13254712-13254756)
chr1 (102-145)||(23697660-23697704)
chr1 (109-145)||(23699355-23699391)
chr1 (103-143)||(37710416-37710456)
chr1 (101-145)||(52415031-52415075)
[»] chr8 (18 HSPs)
chr8 (101-145)||(1358841-1358885)
chr8 (102-144)||(1530546-1530588)
chr8 (101-145)||(3443653-3443697)
chr8 (101-145)||(11087224-11087268)
chr8 (101-145)||(16393797-16393841)
chr8 (101-145)||(34038983-34039027)
chr8 (102-145)||(25496743-25496786)
chr8 (101-144)||(32233721-32233764)
chr8 (107-145)||(7695219-7695257)
chr8 (103-137)||(39628238-39628272)
chr8 (103-137)||(39637788-39637822)
chr8 (101-137)||(1256683-1256719)
chr8 (101-145)||(3741749-3741793)
chr8 (101-137)||(27231869-27231905)
chr8 (101-145)||(29315819-29315863)
chr8 (103-143)||(30887808-30887848)
chr8 (101-137)||(34146298-34146334)
chr8 (101-145)||(38457390-38457434)
[»] chr2 (17 HSPs)
chr2 (101-145)||(158020-158064)
chr2 (101-145)||(25965806-25965850)
chr2 (101-148)||(4316804-4316851)
chr2 (101-144)||(27746584-27746627)
chr2 (103-145)||(11073884-11073926)
chr2 (103-145)||(41541143-41541185)
chr2 (108-145)||(29408721-29408758)
chr2 (101-145)||(34424705-34424749)
chr2 (101-145)||(45273367-45273411)
chr2 (107-142)||(7486249-7486284)
chr2 (107-145)||(4959311-4959349)
chr2 (101-143)||(44898205-44898247)
chr2 (101-145)||(1397569-1397613)
chr2 (101-145)||(12411767-12411811)
chr2 (101-145)||(12423827-12423871)
chr2 (101-145)||(16806506-16806550)
chr2 (101-145)||(16845787-16845831)
[»] scaffold1130 (1 HSPs)
scaffold1130 (101-145)||(473-517)
[»] scaffold0006 (1 HSPs)
scaffold0006 (101-145)||(46532-46576)
[»] scaffold0005 (1 HSPs)
scaffold0005 (108-145)||(256841-256878)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 16196875 - 16196922
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgtaac 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16196875 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgtaac 16196922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 35793105 - 35793058
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgtaac 148  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35793105 acaaagtttgtttcttgttatcttcaaatttaaacaaaattttgtaac 35793058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 3835641 - 3835597
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  3835641 acaaagtttgtttcttgttatcttcaaatttaaacaaaattttgt 3835597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 4567404 - 4567448
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||||||| || |||||||||||||||||||||||||    
T  4567404 acaaagtttgtttcttcttatcttcaaatttaaacaaaattttgt 4567448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 8614827 - 8614783
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  8614827 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 8614783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 12394241 - 12394285
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  12394241 acaaagtttgtttcttgttatcatcaaatttaaacaaaattttgt 12394285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 14771407 - 14771363
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  14771407 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 14771363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 15221859 - 15221815
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  15221859 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 15221815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 39617612 - 39617654
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  39617612 aaagtttgttttttgttatcttcaaatttaaacaaaattttgt 39617654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 4962927 - 4962883
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||    
T  4962927 acaaaatttgtttattgttatcttcaaatttaaacaaaattttgt 4962883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 10535002 - 10534962
Alignment:
Q  105 agtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  10535002 agtttgtttcttgttatcttcaaatttaaccaaaattttgt 10534962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 15643451 - 15643495
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||    
T  15643451 acaaaatttgtttattgttatcttcaaatttaaacaaaattttgt 15643495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 25290716 - 25290760
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||||||| |||| || ||||||||||||||||||||||    
T  25290716 acaaaatttgtttcctgttatcatcaaatttaaacaaaattttgt 25290760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 25056593 - 25056637
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  25056593 acaaagtttgtttcttgttatcttcaaatttaaacaaaattttgt 25056637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7972631 - 7972587
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  7972631 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 7972587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 9095741 - 9095697
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  9095741 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 9095697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 21527297 - 21527253
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  21527297 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 21527253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 23410574 - 23410618
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  23410574 acaaagtttgtttcttgttatcttaaaatttaaacaaaattttgt 23410618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 4184772 - 4184816
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||    
T  4184772 acaaaatttgtttcttgttatctttaaatttaaacaaaattttgt 4184816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 4665976 - 4666020
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||    
T  4665976 acaaaatttgtttcttgttatctttaaatttaaacaaaattttgt 4666020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 6111098 - 6111054
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||    
T  6111098 acaaagtttgtttcttgttatcttcaaacttaaataaaattttgt 6111054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 8460950 - 8460994
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||    
T  8460950 acaaagtttgtttcttgttatcttaaaatttaaacaaaactttgt 8460994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 9353188 - 9353230
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||    
T  9353188 aaagtttgtttgttgttatcttcaaatttaaataaaattttgt 9353230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 17201330 - 17201374
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  17201330 acaaagtttgtttcttgttatcttcaaatttaaacaaaattttgt 17201374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 8544732 - 8544688
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  8544732 acaaagtttgtttcttgttatcttcaaattcaaacaaaattttgt 8544688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 16365824 - 16365868
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  16365824 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 16365868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 17202386 - 17202342
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||| |||||||||| |||||||||||||||||||||||||    
T  17202386 acaaagttggtttcttgttatcttcaaatttaaacaaaattttgt 17202342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 18413359 - 18413319
Alignment:
Q  105 agtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  18413359 agtttgtttcttgttatcttcaaatttaaacaaaattttgt 18413319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 32474288 - 32474332
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  32474288 acaaagtttgtttcttgttatcttcaaatttaaataaaattttgt 32474332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 42674074 - 42674030
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  42674074 acaaagtttgtttcttgttatcttcaaatttaaataaaattttgt 42674030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 20201754 - 20201797
Alignment:
Q  102 caaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||| ||||||||||||| |||||||||||||||||||||||||    
T  20201754 caaactttgtttcttgttatcttcaaatttaaacaaaattttgt 20201797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 1583550 - 1583594
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||    
T  1583550 acaaagtttgttttttgttatcttcaaacttaaacaaaattttgt 1583594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 36437343 - 36437299
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||||||  || |||||||||||||||||||||||||    
T  36437343 acaaagtttgtttctcattatcttcaaatttaaacaaaattttgt 36437299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 39614929 - 39614969
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaatt 141  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  39614929 acaaagtttgtttcttattatcttcaaatttaaacaaaatt 39614969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 11992186 - 11992144
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaatttt 143  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||    
T  11992186 acaaagtttatttcttgttatctccaaatttaaacaaaatttt 11992144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 32717965 - 32717931
Alignment:
Q  111 tttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||| |||||||||||||||||||||||||    
T  32717965 tttcttgttatcttcaaatttaaacaaaattttgt 32717931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 43346663 - 43346625
Alignment:
Q  107 tttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  43346663 tttgtttcttgttatctacaaatttaaacaaaattttgt 43346625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 6428328 - 6428372
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||| ||||| |||| |||||| |||||||||||||    
T  6428328 acaaagtttgtttgttgttatctttaaattttaacaaaattttgt 6428372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 19133458 - 19133422
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  19133458 acaaaatttgtttcttgttgtcttcaaatttaaacaa 19133422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 19922227 - 19922263
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  19922227 acaaaatttgtttcttgttatcttcaaatttaaacaa 19922263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 19924977 - 19925013
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  19924977 acaaaatttgtttcttgttatcttcaaatttaaacaa 19925013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 38840409 - 38840365
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  38840409 acaaagtttgtttcttgttatcttcaaatttaaacaaaattttgt 38840365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 37209975 - 37209934
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattt 142  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  37209975 acaaagtttgtttcttgttatcttcaaatttaaacaaaattt 37209934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 25493926 - 25493970
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||| | |||||||||||||||||||||||||    
T  25493926 acaaagtttgtttcttggtatcttcaaatttaaacaaaattttgt 25493970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 54982748 - 54982705
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttg 144  Q
    ||||||||||||||||||| |||||||||||| |||||||||||    
T  54982748 acaaagtttgtttcttgttatcttcaaatttatacaaaattttg 54982705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 19443543 - 19443501
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaatttt 143  Q
    ||||| ||||||||||||| |||||||||||||||||||||||    
T  19443543 acaaaatttgtttcttgttatcttcaaatttaaacaaaatttt 19443501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 46195866 - 46195904
Alignment:
Q  107 tttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  46195866 tttgtttcttgttatcttcaaatttaaacaaaattttgt 46195904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 1821565 - 1821521
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||    
T  1821565 acaaaatttgtttattgttatcttcaaatttaaacaaaattttgt 1821521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 2492936 - 2492980
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||    
T  2492936 acaaaatttgttttttgttatcttcaaatttaaacaaaattttgt 2492980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 6949225 - 6949269
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||    
T  6949225 acaaagtttgtttcttgttatcttcaaattgaaacaaatttttgt 6949269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 45666419 - 45666463
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| | || ||||||||||||||||||||    
T  45666419 acaaagtttgtttcttgttattttgaaatttaaacaaaattttgt 45666463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 53393440 - 53393484
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||    
T  53393440 acaaagtttgtttctagttatctttaaatttaaacaaaattttgt 53393484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 49263089 - 49263127
Alignment:
Q  107 tttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  49263089 tttgtttcttgtcatcttcaaatttaaacaaaattttgt 49263127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 50720992 - 50721030
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaa 139  Q
    |||||||||||||||| || |||||||||||||||||||    
T  50720992 acaaagtttgtttcttattatcttcaaatttaaacaaaa 50721030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 45635446 - 45635409
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaa 138  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  45635446 acaaaatttgtttcttgttatcttcaaatttaaacaaa 45635409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 9089603 - 9089567
Alignment:
Q  109 tgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  9089603 tgtttcttgttatcttcaaatttaaacaaaactttgt 9089567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 24074127 - 24074087
Alignment:
Q  105 agtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||| ||||  |||||||||||||||||||||||||    
T  24074127 agtttgttttttgtcatcttcaaatttaaacaaaattttgt 24074087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 24538277 - 24538233
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| ||||| |||| ||||||||||||||    
T  24538277 acaaaatttgtttcttgttatcttcgaattcaaacaaaattttgt 24538233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 30913639 - 30913683
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||| |||||||||||| |||| ||||||||||||| ||||||    
T  30913639 acaaagcttgtttcttgttatcttaaaatttaaacaaatttttgt 30913683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 34031994 - 34031954
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaatttt 143  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  34031994 aaagtttgtttcttgttatttttaaatttaaacaaaatttt 34031954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 37371377 - 37371333
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||| ||||||||| |||||||||||||| ||||||||||    
T  37371377 acaaaatttctttcttgttatcttcaaatttaaataaaattttgt 37371333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 49299837 - 49299793
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| | |||||||||||| ||||||||||    
T  49299837 acaaaatttgtttcttgttattttcaaatttaaagaaaattttgt 49299793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 53370369 - 53370325
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||||||| || |||| |||||||||||||| |||||    
T  53370369 acaaagtttgtttcttattatcttaaaatttaaacaaaagtttgt 53370325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 37030968 - 37030924
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  37030968 acaaagtttgtttcttgttatcttcaaatttaaacaaaattttgt 37030924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 2093875 - 2093919
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  2093875 acaaagtttgtttcttgttatcttcaaatttaaactaaattttgt 2093919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 5493647 - 5493691
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||||||| || |||||||||||||||||||||||||    
T  5493647 acaaagtttgtttcttattatcttcaaatttaaacaaaattttgt 5493691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 3751556 - 3751598
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaatttt 143  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  3751556 acaaagtttgtttcttgttatctttaaatttaaacaaaatttt 3751598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 2599150 - 2599190
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaatt 141  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  2599150 acaaagtttgtttcttgttatctttaaatttaaacaaaatt 2599190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 7259683 - 7259639
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||||||||| || |||||||||||||||||||||||||    
T  7259683 acaaaatttgtttcttattatcttcaaatttaaacaaaattttgt 7259639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 9588858 - 9588902
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||    
T  9588858 acaaagtttgtttcttgttatcttaaaatttaaacaaaactttgt 9588902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 15638482 - 15638438
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||    
T  15638482 acaaagtttgtttcttgttatcttaaaattcaaacaaaattttgt 15638438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 45646693 - 45646737
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||    
T  45646693 acaaagtttgtttcctgttatctgcaaatttaaacaaaattttgt 45646737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 12568520 - 12568563
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttg 144  Q
    |||||||||||||||| || |||| |||||||||||||||||||    
T  12568520 acaaagtttgtttcttattatcttaaaatttaaacaaaattttg 12568563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 13544984 - 13545027
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttg 144  Q
    |||||||||||||||| || |||| |||||||||||||||||||    
T  13544984 acaaagtttgtttcttattatcttaaaatttaaacaaaattttg 13545027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 6512555 - 6512513
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||| || ||||||||| ||||||||||||    
T  6512555 aaagtttgtttcttgttatcctcaaatttatacaaaattttgt 6512513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 45759920 - 45759879
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattt 142  Q
    |||||||| |||||||||| |||| |||||||||||||||||    
T  45759920 acaaagttcgtttcttgttatctttaaatttaaacaaaattt 45759879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 296548 - 296592
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| || |||||||||| |||| ||||||||||||||||||||    
T  296548 acaaatttcgtttcttgttatcttaaaatttaaacaaaattttgt 296592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 375838 - 375882
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| || | |||||| |||||||||||||    
T  375838 acaaagtttgtttcttgttatcctaaaattttaacaaaattttgt 375882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 6472725 - 6472681
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |  ||||||||| ||||||||||||    
T  6472725 acaaagtttgtttcttgttattctcaaatttatacaaaattttgt 6472681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 20841407 - 20841447
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaatt 141  Q
    |||||||||||||||| || |||| ||||||||||||||||    
T  20841407 acaaagtttgtttcttattatctttaaatttaaacaaaatt 20841447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 38751084 - 38751040
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||||    
T  38751084 acaaaatttgtttcttgttatctacagatttaaacaaaattttgt 38751040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 39386784 - 39386828
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  39386784 acaaagtttgtttcttgttatcttcaaatttaaacaaaattttgt 39386828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 6295744 - 6295700
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  6295744 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 6295700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 36319963 - 36319926
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaa 138  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  36319963 acaaagtttgtttcttgttatcttcaaatttaaacaaa 36319926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 788256 - 788212
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||||    
T  788256 acaaaatttatttcttgttatcttcaaatttaaacaaaattttgt 788212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 1674754 - 1674716
Alignment:
Q  107 tttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  1674754 tttgtttcttgttatcttcaaatttaaataaaattttgt 1674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 2655807 - 2655844
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaa 138  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  2655807 acaaaatttgtttcttgttatcttcaaatttaaacaaa 2655844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 13254756 - 13254712
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||||||||| || |||||||||||||| ||||||||||    
T  13254756 acaaaatttgtttcttattatcttcaaatttaaataaaattttgt 13254712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 23697704 - 23697660
Alignment:
Q  102 caaagtttgtttctt-gttttcttcaaatttaaacaaaattttgt 145  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||    
T  23697704 caaaatttgtttctttgttatcttcaaatttaaacaaaattttgt 23697660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 23699391 - 23699355
Alignment:
Q  109 tgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  23699391 tgtttcttgttatcttcagatttaaacaaaattttgt 23699355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 37710456 - 37710416
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaatttt 143  Q
    ||||||||||| ||| | |||||||||||||||||||||||    
T  37710456 aaagtttgttttttggtatcttcaaatttaaacaaaatttt 37710416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 52415031 - 52415075
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||||||||| || |||||| ||||||||||||||||||    
T  52415031 acaaaatttgtttcttcttatcttcagatttaaacaaaattttgt 52415075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 1358885 - 1358841
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  1358885 acaaagtttgtttcttgttatcttaaaatttaaacaaaattttgt 1358841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 1530588 - 1530546
Alignment:
Q  102 caaagtttgtttcttgttttcttcaaatttaaacaaaattttg 144  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  1530588 caaagcttgtttcttgttttcttcaaattgaaacaaaattttg 1530546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 3443697 - 3443653
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||    
T  3443697 acaaaatttgtttcttgttatcttcaaatttaaaccaaattttgt 3443653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 11087224 - 11087268
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||| ||||||||| || |||||||||||||||||||||||||    
T  11087224 acaaagcttgtttcttattatcttcaaatttaaacaaaattttgt 11087268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 16393797 - 16393841
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||    
T  16393797 acaaagtttattttttgttatcttcaaatttaaacaaaattttgt 16393841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 34038983 - 34039027
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||    
T  34038983 acaaagtttgtttcttgttatcttaaaatttaaataaaattttgt 34039027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 25496743 - 25496786
Alignment:
Q  102 caaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||| || |||| ||||||||||||||||||||    
T  25496743 caaagtttgtttcttattatctttaaatttaaacaaaattttgt 25496786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 32233721 - 32233764
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttg 144  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||    
T  32233721 acaaagtttgtttattgttatcttcaaatttaaataaaattttg 32233764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 7695257 - 7695219
Alignment:
Q  107 tttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  7695257 tttgcttcttgttatcttcaaatttaaacaaaattttgt 7695219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 39628272 - 39628238
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||||||||||||||| |||||||||||||||||    
T  39628272 aaagtttgtttcttgttatcttcaaatttaaacaa 39628238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 39637822 - 39637788
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||||||||||||||| |||||||||||||||||    
T  39637822 aaagtttgtttcttgttatcttcaaatttaaacaa 39637788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 1256719 - 1256683
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1256719 acaaagtttgtttcttgtaatcttcaaatttaaacaa 1256683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 3741749 - 3741793
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||| ||||||| ||||||||||    
T  3741749 acaaaatttgtttcttgttatcttcatatttaaagaaaattttgt 3741793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 27231869 - 27231905
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  27231869 acaaagtttgtttcttgttatctttaaatttaaacaa 27231905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 29315863 - 29315819
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||||    
T  29315863 acaaaatttgtttcttgttatctacagatttaaacaaaattttgt 29315819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 30887848 - 30887808
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaatttt 143  Q
    ||||||||||| ||||| |||| ||||||||||||||||||    
T  30887848 aaagtttgttttttgttatctttaaatttaaacaaaatttt 30887808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 34146298 - 34146334
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaa 137  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  34146298 acaaagtctgtttcttgttatcttcaaatttaaacaa 34146334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 38457390 - 38457434
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||  |||||||| | |||||||||||||||||||||||    
T  38457390 acaaagtttaattcttgttattttcaaatttaaacaaaattttgt 38457434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 158064 - 158020
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  158064 acaaagtttgtttcttgttaccttcaaatttaaacaaaattttgt 158020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 25965850 - 25965806
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||    
T  25965850 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttgt 25965806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 4316804 - 4316851
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgtaac 148  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||    
T  4316804 acaaagtttgttccttgttatctttaaatttaaacaaaattttgtaac 4316851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 27746584 - 27746627
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttg 144  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||    
T  27746584 acaaaatttgtttcttgttatcttcaaatttaaacaaaattttg 27746627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 11073926 - 11073884
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  11073926 aaagtttgtttcttgttattttcaaatttaaacaaaattttgt 11073884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 41541143 - 41541185
Alignment:
Q  103 aaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  41541143 aaagtttgtttcttgttatcttaaaatttaaacaaaattttgt 41541185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 29408758 - 29408721
Alignment:
Q  108 ttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||| |||||||||||||||||||||||||    
T  29408758 ttgtttcttgttatcttcaaatttaaacaaaattttgt 29408721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 34424749 - 34424705
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||    
T  34424749 acaaaatttgttttttgttatcttcaaatttaaacaaaattttgt 34424705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 45273411 - 45273367
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||    
T  45273411 acaaagtttgtttcttgttatcttaaaatttaaacaaaactttgt 45273367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 7486284 - 7486249
Alignment:
Q  107 tttgtttcttgttttcttcaaatttaaacaaaattt 142  Q
    ||||||||||||| ||||||||||||||||||||||    
T  7486284 tttgtttcttgttatcttcaaatttaaacaaaattt 7486249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 4959349 - 4959311
Alignment:
Q  107 tttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  4959349 tttgtttcttgttatcttcaaatttaaataaaattttgt 4959311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 44898205 - 44898247
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaatttt 143  Q
    |||||||  |||||||||| |||||||||||||||||||||||    
T  44898205 acaaagtgcgtttcttgttatcttcaaatttaaacaaaatttt 44898247  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 1397569 - 1397613
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||||||||| || |||| ||||||||||||||||||||    
T  1397569 acaaaatttgtttcttattatctttaaatttaaacaaaattttgt 1397613  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 12411767 - 12411811
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||||||| | || |||||||||||||||||||||||||    
T  12411767 acaaaatttgtttcatcttatcttcaaatttaaacaaaattttgt 12411811  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 12423827 - 12423871
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||||||| | || |||||||||||||||||||||||||    
T  12423827 acaaaatttgtttcatcttatcttcaaatttaaacaaaattttgt 12423871  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 16806550 - 16806506
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||| |||||||| || ||||||||||||||||||||||    
T  16806550 acaaaatttgattcttgttatcctcaaatttaaacaaaattttgt 16806506  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 16845831 - 16845787
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| |||| |||||||| || ||||||||||||||||||||||    
T  16845831 acaaaatttgattcttgttatcctcaaatttaaacaaaattttgt 16845787  T

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Target: scaffold1130 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 473 - 517
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||    
T  473 acaaaatttgtttcttgtcatcttcaaatttaaacaaaattttgt 517  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 46576 - 46532
Alignment:
Q  101 acaaagtttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||    
T  46576 acaaaatttgtttcttgtcatcttcaaatttaaacaaaattttgt 46532  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 256841 - 256878
Alignment:
Q  108 ttgtttcttgttttcttcaaatttaaacaaaattttgt 145  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  256841 ttgtttcttgttatcttcaattttaaacaaaattttgt 256878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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