View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7223_high_2 (Length: 675)

Name: NF7223_high_2
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7223_high_2
NF7223_high_2
[»] chr6 (1 HSPs)
chr6 (12-631)||(34880297-34880931)


Alignment Details
Target: chr6 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 12 - 631
Target Start/End: Complemental strand, 34880931 - 34880297
Alignment:
Q  12 atggacatcaaccggggatgctgatcatgttatgattgttggatcctattttcattatgcaggagggtttgaacctcctcaggtaattccc--------- 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||             
T  34880931 atggacatcaaccggggatgccgatcatgttatgattgttggatcctattttcattatgcaggagggtttgaacctcctcaggcaattccctcactttta 34880832  T
Q  103 ------gttttgttaagacaagcttcaagtggcatgaatctttaaactcctcgttctaaattttaatgacctctctccctatttacatattttactgctt 196  Q
          ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34880831 tttcccgttttgttaggacaagattcaagtggcatgaatctttaaactcctcgttctaaattttaatgacctctctccctatttacatattttactgctt 34880732  T
Q  197 agttctccctgcacacacaccacctttattatatctgaatcacaactctagcaccaacaaaactaaccatttgtgatacattcatgttgttgtaatactt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34880731 agttctccctgcacacacaccacctttattatatctgaatcacaactctagcaccaacaaaactaaccatttgtgatacattcatgtcgttgtaatactt 34880632  T
Q  297 gaatcaataactgatcatggagggaaacttgtgatgataatgtgtcgcatgatattgatatatgtgcagtttttctgagacttctattcttattaattgg 396  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34880631 gaatcgatagctgatcatggagggaaacttgtgatgataatgtgtcacatgatattgatatatgtgcagttgttctgagacttctattcttattaattgg 34880532  T
Q  397 catttccctttttgtaataacaaaatattttgacaaagatcagctattatttattaacaaaccaaatagtatgctttaaaataaagcaggacagaaggtt 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34880531 catttccctttttgtaataacaaaatattttgacaaagatcagctattatttattaacaaaccaaatagtatgctttaaaataaagcaggacagaaggtt 34880432  T
Q  497 aattaattcagctgctttttcccctatataaaacataatttctttcgctaatcatgaaacaaatttgaaagtacaaatttgattgtatatgatgtgatca 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34880431 aattaattcagctgctttttcccctatataaaacataatttctttcgctaatcatgaaacaaatttgaaagtacaaatttgattgtatatgatgtgatca 34880332  T
Q  597 tgtgacagtgttatcaattctgaggtcaatgtaac 631  Q
    |||||||||||||||||||||||||||||||||||    
T  34880331 tgtgacagtgttatcaattctgaggtcaatgtaac 34880297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University