View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_high_20 (Length: 223)
Name: NF7223_high_20
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 39540048 - 39539857
Alignment:
| Q |
15 |
actgagtcagatattgaagagacattcaagaagcttgtgactgaactcaagaagactcctctggaagtctttgatgctttgaagagtcaaactgttgatt |
114 |
Q |
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| T |
39540048 |
actgagtcagatattgaagagacattcaagaagcttgtgactgaactcaagaagactcctctggaagtctttgatgctttgaagagtcaaactgttgatt |
39539949 |
T |
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| Q |
115 |
tggtcctaactgctcatcctactcagtcgattcgtcgatctttgctgcaaaagcatggaaggtttgtccattatatccgttaataattttct |
206 |
Q |
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| T |
39539948 |
tggtcctaactgctcatcctactcagtcgattcgtcgatctttgctgcaaaagcatggaaggtttgtccattatatccgttaataattttct |
39539857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 32095182 - 32095293
Alignment:
| Q |
70 |
ctcctctggaagtctttgatgctttgaagagtcaaactgttgatttggtcctaactgctcatcctactcagtcgattcgtcgatctttgctgcaaaagca |
169 |
Q |
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|||||| |||||| |||||||| ||||||| || || |||||| | || || ||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
32095182 |
ctcctcaggaagtttttgatgcattgaagaaccagaccgttgatcttgttcttactgctcatcctactcagtcggttcgtcgatctttgcttcaaaagca |
32095281 |
T |
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| Q |
170 |
tggaaggtttgt |
181 |
Q |
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||||||||||| |
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| T |
32095282 |
cggaaggtttgt |
32095293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 30910485 - 30910318
Alignment:
| Q |
15 |
actgagtcagatattgaagagacattcaagaagcttgtgactgaactcaagaagactcctctggaagtctttgatgctttgaagagtcaaactgttgatt |
114 |
Q |
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||||||||||| ||||||||||| ||||||| |||||||| | |||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
30910485 |
actgagtcagacattgaagagaccttcaagaggcttgtgaatcaactgaagaagacccctcttgaagtctttgatgctttgaagagccaaactgttgatt |
30910386 |
T |
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| Q |
115 |
tggtcctaactgctcatcctactcagtcgattcgtcgatctttgctgcaaaagcatggaaggtttgtc |
182 |
Q |
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|||||||||||||||||||||| ||||| |||| |||||||| |||| ||||| |||||||||||| |
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| T |
30910385 |
tggtcctaactgctcatcctacccagtctgttcgcagatctttgttgcagaagcacggaaggtttgtc |
30910318 |
T |
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