View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7223_high_21 (Length: 220)
Name: NF7223_high_21
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 42944836 - 42944649
Alignment:
| Q |
11 |
tttggtgttgggtttgaaattaagaaaccacactcaattacatacacaatatgaatcagaaagtatagaagagagttactttgagatgaaaaatttctct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42944836 |
tttggtgttgggtttgaaattaagaaaccacactcaattacatacacaatatgaaacagaaagtatagaagagagttattttgagatgaaaaatttctct |
42944737 |
T |
|
| Q |
111 |
caatgaaatttgttgttcattatcaatgtaaattgtacttatacaagtgatcacatgataactccttagtaatagaaataatagaatt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42944736 |
caatgaaatttgttgttcattatcaatgtaaattgtacttatacaagtgatcacatgataactccttagtaatagaaataatagaatt |
42944649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University