View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_high_4 (Length: 419)
Name: NF7223_high_4
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 5773669 - 5773256
Alignment:
| Q |
1 |
tacagtatagactatagacctaa-tcattttagtaagttggtaatttttagtagaggacatggcgcatgttttcattcacaatttctgagcatattgatg |
99 |
Q |
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| T |
5773669 |
tacagtatagactatagacctaaatcattttagtaagttggtaatttttagtagaggacatggcgcatgttttcattcacaatttctaagcatattgatg |
5773570 |
T |
|
| Q |
100 |
cttgagtacagtacattctcatgtctattgagactaaattccttttgaaacaatatagattagttctatatgttccctggtgaaattgttaaaatgtaaa |
199 |
Q |
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| T |
5773569 |
cttgagtacagtacagtctcatgtctattgagactaaattccttttgaagcaatatagattagttctatatgttccctggtgaaattgttaaaatgtaaa |
5773470 |
T |
|
| Q |
200 |
gaatcttctatatgtaaagagctctcttctgatacttccatgctaagatttcatgttattatgaaaaggtatattcaaatttgagctattagcagtacta |
299 |
Q |
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| T |
5773469 |
gaatcttctatctgtaaagagctctcttctgatacttccatgct-agatttcatgttattatgaaaaggtatattcaaatttgagctattagcggtacta |
5773371 |
T |
|
| Q |
300 |
gtataagaagtggaaatggacactcattgtatataatcaaaatcgtgacgaccgaattaagtctattctcctacttcccaagaattgctcaggagatttg |
399 |
Q |
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| T |
5773370 |
gtataagaagtggaaatggacactcattgtatataatcaaaatcgtgacgaccgaattaagtctattctcctacttcccaagaattgctcaggagatttg |
5773271 |
T |
|
| Q |
400 |
tttctcttatgatgt |
414 |
Q |
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| T |
5773270 |
tttctcttatgatgt |
5773256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 22 - 167
Target Start/End: Complemental strand, 5767399 - 5767261
Alignment:
| Q |
22 |
aatcattttagtaagttggtaatttttagtagaggacatggcgcatgttttcattcacaatttctgagcatattgatgcttgagtacagtacattctcat |
121 |
Q |
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| T |
5767399 |
aatcattttagtaagttggtaatttttaggagaggagatggagca------ctttcacaatttctgagcatattgatgcttgagtagagtacattctcaa |
5767306 |
T |
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| Q |
122 |
gtctattgagactaaattccttttgaaacaatatagattagttcta |
167 |
Q |
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| T |
5767305 |
gtctattgagactaaattcc-tctgaagcaatattgattagttcta |
5767261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 5767261 - 5767216
Alignment:
| Q |
245 |
agatttcatgttattatgaaaaggtatattcaaatttgagctatta |
290 |
Q |
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| T |
5767261 |
agatttcatgttattatgaaaaggtattttgaaatttgagctatta |
5767216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 408
Target Start/End: Complemental strand, 5767191 - 5767069
Alignment:
| Q |
293 |
agtactagtataagaagtggaaatggacactcattgtata-------taatcaaaatcgtgacgaccgaattaagtctattctcctacttcccaagaat- |
384 |
Q |
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||||||||||||||||||| ||||||| ||||||||| || ||||||||||| | ||| |||||| || |||||||||||||||||||||| |
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|
| T |
5767191 |
agtactagtataagaagtgcaaatggatactcattgtgtatatattgtaatcaaaatctt---gactgaattaggtttattctcctacttcccaagaatg |
5767095 |
T |
|
| Q |
385 |
--tgctcaggagatttgtttctctta |
408 |
Q |
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|||||||| |||| |||| ||||| |
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| T |
5767094 |
gctgctcaggggattggtttttctta |
5767069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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