View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_high_5 (Length: 366)
Name: NF7223_high_5
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 6655246 - 6654910
Alignment:
| Q |
19 |
cgaatcaagaatatcaggtattttggcatgtcacattctccaacctcttctgactgtgtgactgttcagttggataatggatcatctgccattacgacag |
118 |
Q |
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| T |
6655246 |
cgaatcacgaatatcaggtgttttggcatgtcacattctccaacctcttttgactgtgtgactgttcagttggataatggatcatctaccattacgacag |
6655147 |
T |
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| Q |
119 |
tagcctatgtacatttcctttcggaaggagttggtgaccgtatcagttttaaagacttgacatttcctcactactccacaagtcctgcttttcataatgg |
218 |
Q |
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| T |
6655146 |
tagcctatgtacatttcctttcggaaggagttggtgaccgtatcagttttaaagacttgacatttcctcactactccacaagtcctgcttttcataatgg |
6655047 |
T |
|
| Q |
219 |
attattttattttcttatcttaacagggaagttagcagttataaatccaactagaggagaaataagttggaaagtacttgaggaacctcaagctccatgt |
318 |
Q |
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| T |
6655046 |
attattttattttcttatcttaacagggaagttagcagttataaatccaactagaggagaaataagttggaaagtacttgaggaacctcaagctccatgt |
6654947 |
T |
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| Q |
319 |
agcagctgcttcaacaactttctagttgaatgtgatg |
355 |
Q |
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| T |
6654946 |
agcagctgcttcaacaactttctagttgaatgtgatg |
6654910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 195 - 298
Target Start/End: Complemental strand, 6663197 - 6663094
Alignment:
| Q |
195 |
cacaagtcctgcttttcataatggattattttattttcttatcttaacagggaagttagcagttataaatccaactagaggagaaataagttggaaagta |
294 |
Q |
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| T |
6663197 |
cacaagtcctgcttttcataatggattattttattttcttactgtaactggaaagttagcagttataaatccaacaagaggaaaaataagttggaaagaa |
6663098 |
T |
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| Q |
295 |
cttg |
298 |
Q |
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|||| |
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| T |
6663097 |
cttg |
6663094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 6663355 - 6663274
Alignment:
| Q |
19 |
cgaatcaagaatatcaggtattttggcatgtcacattctccaacctcttctgactgtgtgactgttcagttggataatggat |
100 |
Q |
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| T |
6663355 |
cgaatcaagaatatcagatattttggcatgtcacattctccaacctcttctgaccatgtgaccgttgagtttgataaaggat |
6663274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 6682351 - 6682424
Alignment:
| Q |
282 |
aagttggaaagtacttgaggaacctcaagctccatgtagcagctgcttcaacaactttctagttgaatgtgatg |
355 |
Q |
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| T |
6682351 |
aagttggaaggaacttgaggagcctcaagctccatgcaacaagtacttcaacaactttctagttgaatgtgatg |
6682424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 6682146 - 6682196
Alignment:
| Q |
21 |
aatcaagaatatcaggtattttggcatgtcacattctccaacctcttctga |
71 |
Q |
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||||| ||||| | ||| |||||||||||||||||| |||||||||||||| |
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| T |
6682146 |
aatcaggaatacccggtgttttggcatgtcacattccccaacctcttctga |
6682196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 6682294 - 6682328
Alignment:
| Q |
195 |
cacaagtcctgcttttcataatggattattttatt |
229 |
Q |
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| T |
6682294 |
cacaagtcctgtttttcataatggattattttatt |
6682328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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