View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_high_8 (Length: 331)
Name: NF7223_high_8
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_high_8 |
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| [»] scaffold1185 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 17738463 - 17738772
Alignment:
| Q |
3 |
catcccctcctcccaacctaacctacacttctcctccaccgaacgctccttatctatcgccaaatcaaagagacggggaaatttgagactcaacgggata |
102 |
Q |
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| T |
17738463 |
catcccctcctcccaacctaacctacacttctcctccaccgaacgctccttacctaccgccaaatcaaagagacagggaaatttgagactcaacgggata |
17738562 |
T |
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| Q |
103 |
tcccccaccgaggtgtcatgccaaaataaagagtcttgtccgtcacctaatacccgctgaatattgttatcaaaccatctacctgcaccctctccgaccc |
202 |
Q |
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| T |
17738563 |
tcctccaccgaggtgtcaagccaaaataaagagtctcgtccgtcacctaatacccgctgaatattgttatcaaaccatctacctgcacccactccgaccc |
17738662 |
T |
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| Q |
203 |
cctcacgaaccctactcaacatccgccaccaagatgaactatgactaccaccctttgccaaccgaccccctacctccccgtaccgagccctaaaaaattg |
302 |
Q |
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| T |
17738663 |
cctcacgaacgttactcaacatccgccaccaagatgaactatgactaccaccctttgccaaccgaccccttacctccccgtaccgagccctaaaaaatcg |
17738762 |
T |
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| Q |
303 |
ataccacaac |
312 |
Q |
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| T |
17738763 |
ataccacaac |
17738772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 5663554 - 5663804
Alignment:
| Q |
6 |
cccctcctcccaacctaacctacacttctcctccaccgaacgctccttatctatcgccaaatcaaagagacggggaaatttgagactcaacgggatatcc |
105 |
Q |
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| T |
5663554 |
cccctccgcccaccctagcctacacatctctgccaccgaacactccttatccactgccaaatcaaaaagacagggaaatttatgactcaacggaatatcc |
5663653 |
T |
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| Q |
106 |
cccaccgaggtgtcatgccaaaataaagagtcttgtccgtcacctaatacccgctgaatattgttatcaaaccatctacctgcaccctctccgaccccct |
205 |
Q |
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| T |
5663654 |
cccacctaggcatcatgccaaaataaagtgtctcgaccatcgcctaaaacccactttatgttattgtcgaaccacctaccaacaccctcaccaacccctt |
5663753 |
T |
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| Q |
206 |
cacgaaccctactcaacatccgccaccaagatgaactatgactaccaccct |
256 |
Q |
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| T |
5663754 |
cgcggaccctactcaacatccgccaccatgtcgaactatgtctaccaccct |
5663804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1185 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1185
Description:
Target: scaffold1185; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 1486 - 1368
Alignment:
| Q |
14 |
cccaacctaacctacacttctcctccaccgaacgctccttatctatcgccaaatcaaagagacggggaaatttgagactcaacgggatatcccccaccga |
113 |
Q |
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|||| |||||||| ||| |||||||||||||| |||||||| | ||||||||||| || | || |||||| ||||||||||| || || || | | | |
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| T |
1486 |
cccaccctaacctccacaactcctccaccgaacactccttattcacagccaaatcaaaaagtcaggaaaatttaagactcaacggaatttctcctatcca |
1387 |
T |
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| Q |
114 |
ggtgtcatgccaaaataaa |
132 |
Q |
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| T |
1386 |
attgtcatgccaaaataaa |
1368 |
T |
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