View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7223_high_9 (Length: 330)

Name: NF7223_high_9
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7223_high_9
NF7223_high_9
[»] chr5 (1 HSPs)
chr5 (45-317)||(21843617-21843890)
[»] scaffold0125 (1 HSPs)
scaffold0125 (45-318)||(19961-20235)
[»] chr4 (4 HSPs)
chr4 (48-158)||(10660080-10660190)
chr4 (48-158)||(10874225-10874335)
chr4 (218-305)||(10660573-10660660)
chr4 (218-305)||(10874718-10874805)
[»] chr2 (1 HSPs)
chr2 (48-158)||(12818505-12818615)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 45 - 317
Target Start/End: Original strand, 21843617 - 21843890
Alignment:
Q  45 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21843617 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttagatctagattatgtttttgttgttttgattatttgggtcttcattga 21843716  T
Q  145 gtttatgtagtgacnnnnnnngttgatttctgata-ggnnnnnnngtttctaataatgggtatttgnnnnnnnnttaacctttttatgttgctaaatcct 243  Q
    ||||||||||||||       |||||||||||||| ||       |||||||||||||||||||||        ||||||||||||||||||||||||||    
T  21843717 gtttatgtagtgactttttttgttgatttctgatagggtttttttgtttctaataatgggtatttgaaaaaaaattaacctttttatgttgctaaatcct 21843816  T
Q  244 tggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc 317  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21843817 tggttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc 21843890  T

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Target: scaffold0125 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 45 - 318
Target Start/End: Complemental strand, 20235 - 19961
Alignment:
Q  45 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20235 agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga 20136  T
Q  145 gtttatgtagtgacnnnnnnngttgatttctgata-ggnnnnnnngtttctaataatgggtatttgnnnnnnnnttaacctttttatgttgctaaatcct 243  Q
    ||||||||||||||       |||||||| ||||| ||       |||||||||||||||||||||        |||||||| |||||||||||||||||    
T  20135 gtttatgtagtgactttttttgttgatttttgatagggtttttttgtttctaataatgggtatttgaaaaaaaattaaccttgttatgttgctaaatcct 20036  T
Q  244 tggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20035 tggttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtctggctctatgatgtcca 19961  T

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Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 10660080 - 10660190
Alignment:
Q  48 aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt 147  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10660080 aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt 10660179  T
Q  148 tatgtagtgac 158  Q
    |||||| ||||    
T  10660180 tatgtactgac 10660190  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 10874225 - 10874335
Alignment:
Q  48 aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt 147  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10874225 aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt 10874324  T
Q  148 tatgtagtgac 158  Q
    |||||| ||||    
T  10874325 tatgtactgac 10874335  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 10660573 - 10660660
Alignment:
Q  218 ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc 305  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10660573 ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc 10660660  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 10874718 - 10874805
Alignment:
Q  218 ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc 305  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10874718 ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc 10874805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 12818615 - 12818505
Alignment:
Q  48 aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgtt--gttttgattatttgggtcttcattgag 145  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||  |||    ||||||| |||||| ||  ||||||||| |||||||||||||||||    
T  12818615 aattcccttttgattcttttttttgggtattctttgaagataact--ttaaacatagattacgttttttttttgttttgattgtttgggtcttcattgag 12818518  T
Q  146 tttatgtagtgac 158  Q
    |||||||||||||    
T  12818517 tttatgtagtgac 12818505  T

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