View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_low_13 (Length: 317)
Name: NF7223_low_13
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 28870792 - 28871091
Alignment:
| Q |
1 |
aatgtatgggatctgattctattactttccttctgaattgtttcattttgtactttcagattgttgagccattcactgctcattatgtttttgcacttgg |
100 |
Q |
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| T |
28870792 |
aatgtatgggatctgattctattactttccttctgaattgtttcattttgtactttcagattgttgagccattcactgctcattacgtttttgcacttgg |
28870891 |
T |
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| Q |
101 |
cgtagcaagattcttaagctgtgctcattgggttcttcaggtctgttcataaattttttgagtcgtctttcccgttgatcaaggagtgggatatgaacat |
200 |
Q |
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| T |
28870892 |
cgtagcaagattcttaagctgtgctcattgggttcttcaggtctgttcataaattttttgagtcgtctttcccgttgatcaaggagtgggatatgaacat |
28870991 |
T |
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| Q |
201 |
tatttgataaattttagtctttctttcattttcaatggtatagtatagctaagccatttttataggcaacatgtgctctaaagctcttgccgttttgtga |
300 |
Q |
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| T |
28870992 |
tgtttgataaattttagtctttctttcattttcaatggtatagtatagctaagccatttttataggcaacatgtgctctaaagctcttgccgttttgtga |
28871091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 53125047 - 53124952
Alignment:
| Q |
52 |
actttcagattgttgagccattcactgctcattatgtttttgcacttggcgtagcaagattcttaagctgtgctcattgggttcttcaggtctgtt |
147 |
Q |
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| T |
53125047 |
actttcagattgttgaaccattcacagcacactatgtttttgcccttggagttgcaaggttcttgagttgtgcacattgggttctgcaggtttgtt |
53124952 |
T |
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