View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7223_low_14 (Length: 309)

Name: NF7223_low_14
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7223_low_14
NF7223_low_14
[»] chr7 (6 HSPs)
chr7 (1-292)||(27597505-27597796)
chr7 (3-106)||(27597976-27598081)
chr7 (35-105)||(36675185-36675256)
chr7 (3-101)||(21416493-21416593)
chr7 (32-107)||(28445224-28445299)
chr7 (34-79)||(23578098-23578143)
[»] chr5 (6 HSPs)
chr5 (3-105)||(13112529-13112633)
chr5 (3-105)||(13042531-13042635)
chr5 (34-105)||(13042988-13043060)
chr5 (34-105)||(13112984-13113056)
chr5 (32-105)||(13042704-13042778)
chr5 (32-105)||(13112702-13112776)
[»] chr2 (3 HSPs)
chr2 (4-105)||(28226329-28226432)
chr2 (34-105)||(13792588-13792660)
chr2 (34-105)||(28226647-28226719)
[»] chr3 (8 HSPs)
chr3 (4-105)||(29795941-29796042)
chr3 (3-105)||(16143430-16143534)
chr3 (3-105)||(53595952-53596056)
chr3 (3-105)||(53596267-53596371)
chr3 (34-100)||(43978669-43978736)
chr3 (34-102)||(40195914-40195983)
chr3 (34-101)||(23162181-23162249)
chr3 (34-105)||(48127909-48127981)
[»] chr6 (3 HSPs)
chr6 (37-105)||(7301397-7301466)
chr6 (3-105)||(11637783-11637887)
chr6 (34-105)||(7301678-7301750)
[»] chr8 (4 HSPs)
chr8 (34-104)||(5981536-5981607)
chr8 (34-95)||(2954319-2954381)
chr8 (35-76)||(3670894-3670935)
chr8 (32-95)||(2954600-2954664)
[»] chr4 (9 HSPs)
chr4 (34-79)||(922437-922482)
chr4 (34-101)||(11307673-11307741)
chr4 (3-105)||(34946467-34946570)
chr4 (4-105)||(10396123-10396226)
chr4 (34-100)||(47680618-47680685)
chr4 (34-76)||(11197248-11197290)
chr4 (34-105)||(10396408-10396480)
chr4 (38-105)||(34946209-34946277)
chr4 (3-105)||(53468060-53468163)
[»] chr1 (4 HSPs)
chr1 (31-100)||(27686615-27686685)
chr1 (34-102)||(4392286-4392355)
chr1 (34-102)||(15327851-15327920)
chr1 (34-101)||(12466279-12466347)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 27597796 - 27597505
Alignment:
Q  1 ctcaaaaccttaagacaacgagtttatggatttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatatatcactcacacttaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||    
T  27597796 ctcaaaaccttaagacaacgagtttatggatttctctcttatatatccaacgtttgctccatttctaatcgatgtggaatatatcactcacacttaattt 27597697  T
Q  101 ccaacggtagtagctgcatctcgaaattaacgatatttttcnnnnnnntattattgaaatcgatgatatggagtagtgaaggtaagagatccttattgaa 200  Q
    |||||||||||| | ||||||||||||||||||||||||||       ||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  27597696 ccaacggtagtaaccgcatctcgaaattaacgatatttttcaaaaaaatattattgatatcaatgatatggagtggtgaaggtaagagatccttattgaa 27597597  T
Q  201 aatatcaacataaaactagtttacactaatgatgcacgcttaaacataaacttactatccatagtctaacattgatgcagccagagtcggat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27597596 aatatcaacataaaactagtttacactaatgatgcacgcttaaacttaaacttactatccatagtctaacattgatgcagccagagtcggat 27597505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 27598081 - 27597976
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 100  Q
    ||||||| |||||||| | |||||||| | || ||||||||||||||||||||||||  |||||||||||||||| || | |||||||||||||| ||||    
T  27598081 caaaaccctaagacaatgggtttatgggtctcctctcttatatatccaacgtttgctcaatttatagtcgatgtgagacattatcactcacacttgattt 27597982  T
Q  101 ccaacg 106  Q
    ||||||    
T  27597981 ccaacg 27597976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 36675256 - 36675185
Alignment:
Q  35 tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 105  Q
    ||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| || |||| ||||    
T  36675256 tctcttatatatccaacgttttctccatttatagtcgatgtgggacattatcactcacatttgattttcaac 36675185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 21416493 - 21416593
Alignment:
Q  3 caaaaccttaagacaacgagtttatggat-ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 100  Q
    |||||||  |||||||||||||||||| | | | |||||||||| ||||| |||||| ||||||| || ||||||| | || ||||||||||||| ||||    
T  21416493 caaaacccaaagacaacgagtttatgggtctccgctcttatataaccaacttttgctccatttattgttgatgtggaacataatcactcacacttgattt 21416592  T
Q  101 c 101  Q
    |    
T  21416593 c 21416593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 28445224 - 28445299
Alignment:
Q  32 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaacgg 107  Q
    |||||||||||||||||||  |||||| || || |||||||||||||| | ||||||||||| || |||||||||||    
T  28445224 ttctctcttatatatccaatatttgctcca-ttctagtcgatgtgggacattatcactcacagttgatttccaacgg 28445299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 23578098 - 23578143
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtggga 79  Q
    |||||||||||||||||||||| || ||||| || |||||||||||    
T  23578098 ctctcttatatatccaacgttttctccatttctactcgatgtggga 23578143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 13112633 - 13112529
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 100  Q
    |||||||||||||||| | |||||||| | || ||||||||||||| || |||||||  |||| |||||||||||||||| |||||||||||||| ||||    
T  13112633 caaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattatcactcacacttgattt 13112534  T
Q  101 ccaac 105  Q
    |||||    
T  13112533 ccaac 13112529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 13042635 - 13042531
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 100  Q
    |||||||||||| ||| | |||||||| | || ||||||||||||| || |||||||  |||| |||||||||||||||| |||||||||||||| ||||    
T  13042635 caaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattatcactcacacttgattt 13042536  T
Q  101 ccaac 105  Q
    |||||    
T  13042535 ccaac 13042531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 13043060 - 13042988
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 105  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||| | |||||||||| ||| |||||||||    
T  13043060 ctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaac 13042988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 13113056 - 13112984
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 105  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||| | |||||||||| ||| |||||||||    
T  13113056 ctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaac 13112984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 13042778 - 13042704
Alignment:
Q  32 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 105  Q
    |||||||||||||||| || ||||||| ||||| |||| ||||||| | || ||||||||||||| |||||||||    
T  13042778 ttctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaac 13042704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 13112776 - 13112702
Alignment:
Q  32 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 105  Q
    |||||||||||||||| || ||||||| ||||| |||| ||||||| | || ||||||||||||| |||||||||    
T  13112776 ttctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaac 13112702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 28226432 - 28226329
Alignment:
Q  4 aaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttc 101  Q
    |||||| |||||||| | |||||||| | || ||||||||||||||||||||| || ||||| |||||||||||||| | || ||||||||||| |||||    
T  28226432 aaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaacactcacacttgatttc 28226333  T
Q  102 caac 105  Q
    ||||    
T  28226332 caac 28226329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 13792588 - 13792660
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatata-tcactcacacttaatttccaac 105  Q
    |||||||||||||| ||  ||| || ||||| |||| ||||||||| ||| |||||||||||| |||||||||    
T  13792588 ctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttgatttccaac 13792660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 28226719 - 28226647
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttccaac 105  Q
    |||||||||||||||||  |||||  ||||| | ||||||||| |||| ||||| |||||||| |||||||||    
T  28226719 ctctcttatatatccaatatttgccccatttcttgtcgatgtgtgatattatcagtcacacttgatttccaac 28226647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 29796042 - 29795941
Alignment:
Q  4 aaaaccttaagacaacgagtttatggatttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 102  Q
    |||||||||||| || ||||||||| || || |||||||||||| ||||||| ||| |||| ||||||||||| ||||| |||||| |||||| ||||||    
T  29796042 aaaaccttaagataatgagtttatgaatctc-ctcttatatatctaacgttttctttatttttagtcgatgtgagatataatcactaacacttgatttcc 29795944  T
Q  103 aac 105  Q
    |||    
T  29795943 aac 29795941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 16143534 - 16143430
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 100  Q
    |||||| ||||| ||| ||| |||||| | || ||||||||||||||||| |||||| ||||| |||  ||||||| | | |||||||||||||| ||||    
T  16143534 caaaactttaaggcaatgagcttatgggtctcgtctcttatatatccaacatttgctccatttctagcagatgtggaacattatcactcacacttgattt 16143435  T
Q  101 ccaac 105  Q
    |||||    
T  16143434 ccaac 16143430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 53596056 - 53595952
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 100  Q
    ||||||||||||  |||| |||||||| | || ||||||||||||||||| ||| ||  |||| ||||| |||||||| || ||||||| ||||| ||||    
T  53596056 caaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgattt 53595957  T
Q  101 ccaac 105  Q
    |||||    
T  53595956 ccaac 53595952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 53596371 - 53596267
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 100  Q
    ||||||||||||  |||| |||||||| | || ||||||||||||||||| ||| ||  |||| ||||| |||||||| || ||||||| ||||| ||||    
T  53596371 caaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgattt 53596272  T
Q  101 ccaac 105  Q
    |||||    
T  53596271 ccaac 53596267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 43978669 - 43978736
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 100  Q
    ||||||||||||||||| |||| || ||||  |||||||||||||| || ||||||||||||| ||||    
T  43978669 ctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttgattt 43978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 40195914 - 40195983
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 102  Q
    |||||||||||||||||||||| || ||||  |||||||||||  | || ||||||||||||| ||||||    
T  40195914 ctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcc 40195983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 23162249 - 23162181
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttc 101  Q
    ||||||||||| |||||||||| || ||||  || ||||||||||| || ||||||||||||| |||||    
T  23162249 ctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactttatttc 23162181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 48127909 - 48127981
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 105  Q
    |||||||||||||| ||||||| |  |||||||||| |||||| || || |||||||||| || |||||||||    
T  48127909 ctctcttatatatcaaacgtttccaccatttatagttgatgtgtgacataatcactcacatttgatttccaac 48127981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 7301397 - 7301466
Alignment:
Q  37 tcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 105  Q
    ||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||||||||| ||||    
T  7301397 tcttatatatccaacgtttcctccatttctagtcgatgtgggacataatcactcacacttaattttcaac 7301466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 11637783 - 11637887
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttc-tctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 100  Q
    ||||| |||||||||| | |||||||| | || |||||||||||| ||| |||||||||| || |||||||||| ||| | |||||||||||||| ||||    
T  11637783 caaaatcttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgttggacattatcactcacacttgattt 11637882  T
Q  101 ccaac 105  Q
     ||||    
T  11637883 tcaac 11637887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 7301678 - 7301750
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 105  Q
    |||| ||||||||| ||| ||| || ||||| |||||||||||||| || || |||||||||| |||||||||    
T  7301678 ctcttttatatatctaacattttctccatttttagtcgatgtgggacataattactcacacttgatttccaac 7301750  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 5981536 - 5981607
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaa 104  Q
    |||||||||||||||||||||| || ||||  |||||||||||||| || ||||||||||||| ||||||||    
T  5981536 ctctcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacacttgatttccaa 5981607  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 2954319 - 2954381
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacactt 95  Q
    |||||||||||||||||| ||| || ||||  |||||||||||||| || |||||||||||||    
T  2954319 ctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacactt 2954381  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 3670894 - 3670935
Alignment:
Q  35 tctcttatatatccaacgtttgcttcatttatagtcgatgtg 76  Q
    ||||||||||||||||||||| || ||||| |||||||||||    
T  3670894 tctcttatatatccaacgtttcctccatttctagtcgatgtg 3670935  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 2954600 - 2954664
Alignment:
Q  32 ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacactt 95  Q
    |||||||||||||||||||| ||| || ||||  ||||| |||||||| || |||||||||||||    
T  2954600 ttctctcttatatatccaacattttctccattcctagtctatgtgggacataatcactcacactt 2954664  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 922482 - 922437
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtggga 79  Q
    ||||||| |||||| |||||||||||||||| ||||||||||||||    
T  922482 ctctcttctatatctaacgtttgcttcatttctagtcgatgtggga 922437  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 11307673 - 11307741
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaatttc 101  Q
    |||||| ||||||||||| ||| || ||||||||||||||||| || |  |||||||||||||||||||    
T  11307673 ctctctcatatatccaacatttcctccatttatagtcgatgtgagacacaatcactcacacttaatttc 11307741  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 34946467 - 34946570
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttct-ctcttatatatccaacgtttgcttcatttatagtcgatgtgggata-tatcactcacacttaattt 100  Q
    ||||||| ||||||| |  |||||||| | ||| |||||| |||||||||||||||| ||||| ||||||||||| || | |||||| ||||||| ||||    
T  34946467 caaaaccctaagacatcaggtttatgggtctcttctcttaaatatccaacgtttgctccatttctagtcgatgtgagacattatcac-cacacttgattt 34946565  T
Q  101 ccaac 105  Q
    |||||    
T  34946566 ccaac 34946570  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 10396226 - 10396123
Alignment:
Q  4 aaaaccttaagacaacgagtttatggat-ttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttc 101  Q
    |||||| |||| ||| | |||||||| | ||||||||||||||| |||| ||| || ||||| | ||||||||| || || ||||||||||||| |||||    
T  10396226 aaaaccctaaggcaatgggtttatgggtcttctctcttatatattcaacatttcctccatttcttgtcgatgtgagacataatcactcacacttgatttc 10396127  T
Q  102 caac 105  Q
    ||||    
T  10396126 caac 10396123  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 47680685 - 47680618
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 100  Q
    ||||| ||||||| ||| |||| || |||||||| ||||||||||| || ||||||||||||||||||    
T  47680685 ctctcatatatattcaatgtttcctccatttataatcgatgtgggacataatcactcacacttaattt 47680618  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 11197290 - 11197248
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtg 76  Q
    |||||||||||||||||||||| || ||||| |||||||||||    
T  11197290 ctctcttatatatccaacgtttcctccatttctagtcgatgtg 11197248  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 10396480 - 10396408
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 105  Q
    |||||||||||||||||| ||| || ||||| ||||| || || || || ||||||||||||| |||||||||    
T  10396480 ctctcttatatatccaacatttcctccatttctagtcaatatgagacataatcactcacacttgatttccaac 10396408  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 34946209 - 34946277
Alignment:
Q  38 cttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttccaac 105  Q
    |||| |||| ||||||||||| |||||  ||| ||||||||| || ||||||||||||| |||||||||    
T  34946209 cttaaatattcaacgtttgctccatttcaagttgatgtgggacattatcactcacacttgatttccaac 34946277  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 53468060 - 53468163
Alignment:
Q  3 caaaaccttaagacaacgagtttatggatttctctctt-atatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 100  Q
    ||||| ||||| |||| |||||||||| | || ||||| |||||| |||| |||||| ||||| || |||||||| || || ||||||||||||| ||||    
T  53468060 caaaagcttaaaacaatgagtttatgggtctc-ctctttatatattcaacatttgctccatttctaatcgatgtgagacattatcactcacacttgattt 53468158  T
Q  101 ccaac 105  Q
    |||||    
T  53468159 ccaac 53468163  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 27686615 - 27686685
Alignment:
Q  31 tttctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaattt 100  Q
    ||||||||||||||||| || |||| || ||||  |||||||||||| | || ||||||||||||||||||    
T  27686615 tttctctcttatatatctaatgtttcctccattcctagtcgatgtggaacataatcactcacacttaattt 27686685  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 4392286 - 4392355
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 102  Q
    |||| |||||||||||| |||| || |||| |||||||||||| || || ||||||||||||| ||||||    
T  4392286 ctctgttatatatccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttgatttcc 4392355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 15327920 - 15327851
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttcc 102  Q
    |||||||||||||| ||||||| || ||||  ||||||||||| || || ||||||||||||| ||||||    
T  15327920 ctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacacttgatttcc 15327851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 12466347 - 12466279
Alignment:
Q  34 ctctcttatatatccaacgtttgcttcatttatagtcgatgtgggatat-atcactcacacttaatttc 101  Q
    ||||| |||||||||||||||| || ||||| |||| ||||||||| || |||||| |||||| |||||    
T  12466347 ctctcgtatatatccaacgttttctccatttctagttgatgtgggacataatcacttacacttgatttc 12466279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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