View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_low_21 (Length: 240)
Name: NF7223_low_21
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 5773766 - 5773895
Alignment:
| Q |
95 |
gaagctatataatcgctatccaagcttatggactctggtatatatcagtagggagggaaatccttatgcaacaaatcggtatgtaacatatcttccagca |
194 |
Q |
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| T |
5773766 |
gaagctatataatcgctatccaagcttatggactctggtatatatcagtagggagggaaatccttatgcaacaaatcggtatgtaacatatcttcctgca |
5773865 |
T |
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| Q |
195 |
gtctcacttggccggattatcttaacaact |
224 |
Q |
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| T |
5773866 |
gtctcacttggccggattatcttgacaact |
5773895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 468187 - 468115
Alignment:
| Q |
152 |
aaatccttatgcaacaaatcggtatgtaacatatcttccagcagtctcacttggccggattatcttaacaact |
224 |
Q |
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| T |
468187 |
aaatccttatacaacaaatcggtatgtaacatatcttccagcagtctcacttggccggattatcttaacaact |
468115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 5767484 - 5767598
Alignment:
| Q |
110 |
ctatccaagcttatggactctggtatatatcagtagggagggaaatccttatgcaacaaatcggtatgtaacatatcttccagcagtctcacttggccgg |
209 |
Q |
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| T |
5767484 |
ctatccatgattctggactctggtatatatttgtggggaagaaaatccttatacaacaaatcagtacgtaacatatcttcctgcagtctcacttggccgg |
5767583 |
T |
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| Q |
210 |
attatcttaacaact |
224 |
Q |
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| T |
5767584 |
attatcttaacaact |
5767598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 5773699 - 5773745
Alignment:
| Q |
24 |
cattacgatcaataacaacacatgccatgtcgtatgtcacccactac |
70 |
Q |
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| T |
5773699 |
cattacgatcaataacaacacatgccatgtcgtatgtcacccactac |
5773745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 14546055 - 14546119
Alignment:
| Q |
151 |
gaaatccttatgcaacaaatcggtatgtaacatatcttccagcagtctcacttggccggattatc |
215 |
Q |
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| T |
14546055 |
gaaatccttatacaacaattcggtatgtaacatatatgcctgcagtctcactgtgccggattatc |
14546119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 33143057 - 33143003
Alignment:
| Q |
170 |
tcggtatgtaacatatcttccagcagtctcacttggccggattatcttaacaact |
224 |
Q |
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||||||||||| |||| |||| |||||||||||||||||||| ||| | |||||| |
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| T |
33143057 |
tcggtatgtaatatatgttcctgcagtctcacttggccggataatcctgacaact |
33143003 |
T |
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