View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_low_24 (Length: 238)
Name: NF7223_low_24
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 6655296 - 6655531
Alignment:
| Q |
1 |
aaaaattgaaaacttttattaactccaactagtaatagccaaccatcttttgaacaacaaatttcataattcatgtacgaacgtttaacttgtggagagt |
100 |
Q |
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| T |
6655296 |
aaaaattgaaaacttttattaactccaactagtaatagccaaccatcttttgaacaacaaatttcataattcatgtacgaacgtttaacttgtggatagt |
6655395 |
T |
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| Q |
101 |
ttatgatgtatttgtactcgagaccatgttccggatgcaaaaaagtgaaaaccttgtcattcact--gaacacaaataaaggacacattgaaagatcgtc |
198 |
Q |
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| T |
6655396 |
ttatgatgtatttgtactcgagaccatgtttcggatgcaaaaaagtgaaaaccttgtcattcgctgagaagacaaat-aaggacacattgaaagatcgtc |
6655494 |
T |
|
| Q |
199 |
aaaccttaacattgacatggaagaagatgatgtccat |
235 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |
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| T |
6655495 |
aaaccttgacattgacatggaagaagatgatctccat |
6655531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 6663428 - 6663644
Alignment:
| Q |
21 |
aactccaactagtaatagccaaccatcttttgaacaacaaatttcataattcatgtacgaacgtttaacttgtggagagtttatgatgtatttgtactcg |
120 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||| ||| ||||||||| ||||||||||| | |
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| T |
6663428 |
aactcccacaagtaatagccaaccatcttttgaacaacaaatttcataatttatgtaccaaggttcaacttgaggaaagtttatgaggtatttgtacttg |
6663527 |
T |
|
| Q |
121 |
agaccatgttccggatgcaaaaaagtgaaaaccttgtcattcact--gaacacaaataaaggacacattgaaagatcgtcaaaccttaacattgacatgg |
218 |
Q |
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| T |
6663528 |
agaccatgcttcggatgcaaaaaagtgaaaaccttgtcatccgctgagaacacaaataaaggacacattgaaagatgatcaaaccttgacattgacatgc |
6663627 |
T |
|
| Q |
219 |
aagaagatgatgtccat |
235 |
Q |
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||||||||||| ||||| |
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| T |
6663628 |
aagaagatgatctccat |
6663644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 6682077 - 6681879
Alignment:
| Q |
33 |
taatagccaaccatcttttgaacaacaaatttcataattcatgtacgaacgtttaacttgtggagagtttatgatgtatttgtactcgagaccatgttcc |
132 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||| ||| |||| ||| |||||||||||||||||||| | |||||||| | | |
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| T |
6682077 |
taatatccaaccatcttttgaacaacaaatttctgaatttgagtaccaac------cttggggaaagtttatgatgtatttgtacacaagaccatgcttc |
6681984 |
T |
|
| Q |
133 |
ggatgcaaaaaagtgaaaaccttgtcattcactg--aacacaaataaaggacacattgaaagatcgtcaaaccttaacattgacatggaagaagatgatg |
230 |
Q |
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| T |
6681983 |
ggatgcacaaaagtgaagaccttctccttcgctgaaaacacaaatagaggagacattgagagatcatcaaactgtgatattgacattgaagaagatgatc |
6681884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 13244343 - 13244238
Alignment:
| Q |
132 |
cggatgcaaaaaagtgaaaaccttgtcattcactga--acacaaataaaggacacattgaaagatcgtcaaaccttaacattgacatggaagaagatgat |
229 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||| |||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
13244343 |
cggatgcaaaaaagtgaaaaccttatcattcgttgagaacacaaataaaggacatatcgaaagatgatcaaaccacgacattgacatggaagaagatgat |
13244244 |
T |
|
| Q |
230 |
gtccat |
235 |
Q |
| |
|
||||| |
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| T |
13244243 |
ctccat |
13244238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 235
Target Start/End: Complemental strand, 6653842 - 6653638
Alignment:
| Q |
33 |
taatagccaaccatcttttgaacaacaaatttcataattcatgtacgaacgtttaacttgtggagagtttatgatgtatttgtactcgagaccatgttcc |
132 |
Q |
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||||| ||||||||||||| |||||||||||| |||||| || | || | | | ||| ||| |||||||||||||||||||||||||||| || | |
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| T |
6653842 |
taatatccaaccatcttttaaacaacaaatttgtgaattcaagttccaaagataactttgaggaaagtttatgatgtatttgtactcgagaccgtgcttg |
6653743 |
T |
|
| Q |
133 |
ggatgcaaaaaagtgaaaaccttgtcattcactga--acacaaataaaggacacattgaaagatcgtcaaaccttaacattgacatggaagaagatgatg |
230 |
Q |
| |
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|| |||| ||||||||| ||||| || || ||| ||||||||| |||| ||||||| ||||| ||||| | | |||| |||||||||||||||||| |
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| T |
6653742 |
gggtgcacaaaagtgaagaccttatcctttgttgagaacacaaatagaggagacattgagagatcatcaaatcgtgacatggacatggaagaagatgatc |
6653643 |
T |
|
| Q |
231 |
tccat |
235 |
Q |
| |
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||||| |
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|
| T |
6653642 |
tccat |
6653638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 13245954 - 13246072
Alignment:
| Q |
31 |
agtaatagccaaccatcttttgaacaacaaatttcataattcatgtacgaacgtttaacttgtggagagtttatgatgtatttgtactcgagaccatgtt |
130 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |||||| || | || ||| | || ||| ||||||||||||||||||||||||||||||| | |
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| T |
13245954 |
agtaatatccaaccatcttttgaacaacaaatttctgaattcaagttccaaagttgactttcaggaaagtttatgatgtatttgtactcgagaccatgct |
13246053 |
T |
|
| Q |
131 |
ccggatgcaaaaaagtgaa |
149 |
Q |
| |
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|||||| ||||||||| |
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| T |
13246054 |
ttagatgcacaaaagtgaa |
13246072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 13246093 - 13246156
Alignment:
| Q |
172 |
aaataaaggacacattgaaagatcgtcaaaccttaacattgacatggaagaagatgatgtccat |
235 |
Q |
| |
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||||| |||| ||||||| ||||| ||||| | | ||||||||||||||||||||||| ||||| |
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| T |
13246093 |
aaatagaggagacattgagagatcatcaaatcgtgacattgacatggaagaagatgatctccat |
13246156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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