View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_low_5 (Length: 396)
Name: NF7223_low_5
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 46455924 - 46455756
Alignment:
| Q |
15 |
gtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtggcggtgatcg |
114 |
Q |
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| T |
46455924 |
gtggaggaggtgagtgaaccggtggaggtggtgaatgaactggtggtgaaggagaatgcacaggaggtggtgaggattgaactggtggcggcggtgatcg |
46455825 |
T |
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| Q |
115 |
tgttcttcttttgggtgcttcattatgaggatcatcctcaattggtggttctgcttgaggtgtagaagg |
183 |
Q |
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| T |
46455824 |
tgttcttcttttgggtgcttcattatgaggatcatcctcaattggtggttctgcttcaggtgtagaagg |
46455756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 252 - 386
Target Start/End: Complemental strand, 46455687 - 46455553
Alignment:
| Q |
252 |
ttggggtttgcgaaggtgtaggttgcggttgtggcttaggcactgaaggtgttggtttctcagttggaggatttgaaggagaattggattgagatggttt |
351 |
Q |
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| T |
46455687 |
ttggggtttgcgaaggtgtaggttgcggttgtggcttaggcactgaaggtgttggtttctcagttggaggatttgaaggagaattggattgagatggttt |
46455588 |
T |
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| Q |
352 |
actactacataatcccttggtgcaatccacaggtt |
386 |
Q |
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| T |
46455587 |
actactacataatcccttggtgcaatccacaggtt |
46455553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 46456029 - 46455933
Alignment:
| Q |
15 |
gtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtggcggtga |
111 |
Q |
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| T |
46456029 |
gtggtggtggagaatgaactggtggtggtggggagtgaactggtggaggaggtgagtgaacgggaggtggtggagagtgcactggtggtggtggtga |
46455933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 46456266 - 46456170
Alignment:
| Q |
15 |
gtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtggcggtga |
111 |
Q |
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| T |
46456266 |
gtggaggaggtgaatgaactggtggtggtggagaatgtactggtggaggaggggaatgaaccggtggtggtggagaatgtactggtggaggaggtga |
46456170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 46456224 - 46456137
Alignment:
| Q |
15 |
gtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtgg |
102 |
Q |
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| T |
46456224 |
gtggaggaggggaatgaaccggtggtggtggagaatgtactggtggaggaggtgaatgaaccggtggtggtggagaatgtactggtgg |
46456137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 46456267 - 46456197
Alignment:
| Q |
35 |
ggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtgg |
105 |
Q |
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| T |
46456267 |
ggtggaggaggtgaatgaactggtggtggtggagaatgtactggtggaggaggggaatgaaccggtggtgg |
46456197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 46456048 - 46455975
Alignment:
| Q |
38 |
ggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtggtggcggtga |
111 |
Q |
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| T |
46456048 |
ggaggaggtgagtgaacaggtggtggtggagaatgaactggtggtggtggggagtgaactggtggaggaggtga |
46455975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 46456135 - 46456050
Alignment:
| Q |
17 |
ggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggagaatgcacaggaggtggtggggattgaactggtgg |
102 |
Q |
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| T |
46456135 |
ggaggaggggaatgaaccggtggtggtggagaatgtactggtggaggaggtgaatgaactggtggtggtggagagtgtactggtgg |
46456050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 46456182 - 46456129
Alignment:
| Q |
15 |
gtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggag |
68 |
Q |
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| T |
46456182 |
gtggaggaggtgaatgaaccggtggtggtggagaatgtactggtggaggaggag |
46456129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 46456122 - 46456062
Alignment:
| Q |
9 |
gaacctgtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggaga |
69 |
Q |
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| T |
46456122 |
gaaccggtggtggtggagaatgtactggtggaggaggtgaatgaactggtggtggtggaga |
46456062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 46456095 - 46456002
Alignment:
| Q |
15 |
gtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggagga---gaatgcacaggaggtggtggggattgaactggtggtgg |
105 |
Q |
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| T |
46456095 |
gtggaggaggtgaatgaactggtggtggtggagagtgtactggtggcggaggaggtgagtgaacaggtggtggtggagaatgaactggtggtgg |
46456002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 46456209 - 46456146
Alignment:
| Q |
9 |
gaacctgtggaggtggtgaatgaaccggtggaggtggtgaatgaactggtggtggaggagaatg |
72 |
Q |
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| T |
46456209 |
gaaccggtggtggtggagaatgtactggtggaggaggtgaatgaaccggtggtggtggagaatg |
46456146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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