View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7223_low_7 (Length: 361)
Name: NF7223_low_7
Description: NF7223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7223_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 33628412 - 33628614
Alignment:
| Q |
16 |
acatcatatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaa |
115 |
Q |
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| T |
33628412 |
acatcatatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaa |
33628511 |
T |
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| Q |
116 |
attattgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctatcat |
215 |
Q |
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| T |
33628512 |
attgttgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctataat |
33628611 |
T |
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| Q |
216 |
tca |
218 |
Q |
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||| |
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| T |
33628612 |
tca |
33628614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 68 - 352
Target Start/End: Original strand, 33624556 - 33624844
Alignment:
| Q |
68 |
cggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaat-tattgatgtattttttgaaacattatatgtactatttcttatatttgta |
166 |
Q |
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| T |
33624556 |
cggagaaggaaatcgtccatgaagtttgtatacaaacatgaaagaaaaaaatgttgatatattctttgaaaaaatatat--actatttcttatattagtg |
33624653 |
T |
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| Q |
167 |
ctagattttttaa-aattcagttttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgt |
265 |
Q |
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| T |
33624654 |
ctatattttttcagaagtcaatgttgcttagatttgatgaaatctataattcatagttgttaggagttcacttgtgttaaaggttagttaagaagtgtgt |
33624753 |
T |
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| Q |
266 |
taataattgagagtttttagcaagttaattagcatgtgtgagtgtatat----ttaacaccacaatgcaataagaatgtaatcttcatgat |
352 |
Q |
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| T |
33624754 |
taataattgagagtttttagcaagttaattagaatgtgtgagtgtatataagcttaacaccacaatgcaattagaatgaaattttcatgat |
33624844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 33609931 - 33610006
Alignment:
| Q |
20 |
catatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttg |
95 |
Q |
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| T |
33609931 |
catatgggaaaaacattggttttggtgtcgatttgttaaaggagaagatcgtcaagaaaatcatccatgaagtttg |
33610006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 12059882 - 12059786
Alignment:
| Q |
189 |
ttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttag |
285 |
Q |
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| T |
12059882 |
ttgtttggatttgatcaaatccataattcatagttgttacgagtttacttgtgttacaggttagttaagaagtttgttattagatgagagattttag |
12059786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 12053171 - 12053055
Alignment:
| Q |
196 |
gatttgataaaa-tctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttagcaagttaat |
294 |
Q |
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| T |
12053171 |
gatttgataaaaatccataattcatagttgttaggagtttacttgtgttaca----agttaagaagtatgttagtagttgagaaattttagcaagtttct |
12053076 |
T |
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| Q |
295 |
tagcatgtgtgagtgtatatt |
315 |
Q |
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||| | |||||||||||||| |
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| T |
12053075 |
tagtaattgtgagtgtatatt |
12053055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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