View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7224_high_11 (Length: 260)
Name: NF7224_high_11
Description: NF7224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7224_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 32345593 - 32345818
Alignment:
| Q |
13 |
gaacctgtgtcttccttcatccctctttgcggttaatggtgctacaaacatgaaatctggcttttgtgcatctttgtccaataccacttagtttttactc |
112 |
Q |
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| T |
32345593 |
gaacttgtgtcttccttcatccctctttgcagttaatggtgctacaaacatgaaatctggattttgtgcatctttgttcagtaccacttagttttgactc |
32345692 |
T |
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| Q |
113 |
agtctgaggactttatgacctacatagtcaattagtggatgtacacatttgaatattgagatggagaaatctcatcttgaggtggatccttccactagtg |
212 |
Q |
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| T |
32345693 |
agtctgaggactttatgacccacatactcaattagtggatgtgcacatttgaatgttgagatggagaaatctcatcctgaggtggatccttccactagtg |
32345792 |
T |
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| Q |
213 |
gactaggtggagacaaacggtggcac |
238 |
Q |
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| T |
32345793 |
gactaggtggagacaaacggtggcac |
32345818 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 18198480 - 18198393
Alignment:
| Q |
148 |
tggatgtacacatttgaatattgagatggagaaatctcatcttgaggtggatccttccactagt-ggactaggtggagacaaacggtg |
234 |
Q |
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| T |
18198480 |
tggatgtacacatttgaaagttgaggtggagaaaactcaacttgatgtggattcttccactagtgggactaggaggagaaaaatggtg |
18198393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 16136232 - 16136294
Alignment:
| Q |
176 |
gagaaatctcatcttgaggtggatccttccacta-gtggactaggtggagacaaacggtggca |
237 |
Q |
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| T |
16136232 |
gagaaatctcatcttgagatggagtcttccactatcgggactaggtggagacaaatggtggca |
16136294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 27646460 - 27646388
Alignment:
| Q |
22 |
tcttccttcatccctctttgcggttaatggtgctacaaacatgaaatctggcttttgtgcatctttgtccaat |
94 |
Q |
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|||||| ||||||||||||||||||| | || ||||||||| ||| ||| ||||||||||| |||| |||| |
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| T |
27646460 |
tcttccctcatccctctttgcggttagttgttctacaaacacaaaacgtggattttgtgcatcattgtacaat |
27646388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 8281936 - 8281888
Alignment:
| Q |
36 |
tctttgcggttaatggtgctacaaacatgaaatctggcttttgtgcatc |
84 |
Q |
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| T |
8281936 |
tctttgcggttagtggcgctacaaacatgaaacatgggttttgtgcatc |
8281888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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